RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 HASPINQ8TF76 798 aa18.46■□□□□ 0.55
HDAC6-235ENST00000495515 BCL7CQ8WUZ0 217 aaPredicted RBP18.46■□□□□ 0.55
HDAC6-235ENST00000495515 PPP2R3CQ969Q6 453 aa18.46■□□□□ 0.55
HDAC6-235ENST00000495515 POP1Q99575 1024 aaKnown RBP18.46■□□□□ 0.55
HDAC6-235ENST00000495515 CDX2Q99626 313 aaPredicted RBP18.46■□□□□ 0.55
HDAC6-235ENST00000495515 HERC2P3Q9BVR0 1158 aa18.46■□□□□ 0.55
HDAC6-235ENST00000495515 ENTPD7Q9NQZ7 604 aa18.46■□□□□ 0.55
HDAC6-235ENST00000495515 AGAP1Q9UPQ3 857 aa18.46■□□□□ 0.55
HDAC6-235ENST00000495515 TDRD15B5MCY1 1934 aaKnown RBP18.46■□□□□ 0.55
HDAC6-235ENST00000495515 SYCE3A1L190 88 aa18.45■□□□□ 0.54
HDAC6-235ENST00000495515 F8W810 466 aa18.45■□□□□ 0.54
HDAC6-235ENST00000495515 URODP06132 367 aa18.45■□□□□ 0.54
HDAC6-235ENST00000495515 POU3F3P20264 500 aaPredicted RBP18.45■□□□□ 0.54
HDAC6-235ENST00000495515 IGFBP4P22692 258 aa18.45■□□□□ 0.54
HDAC6-235ENST00000495515 POLR2BP30876 1174 aaKnown RBP18.45■□□□□ 0.54
HDAC6-235ENST00000495515 GTF2H1P32780 548 aa18.45■□□□□ 0.54
HDAC6-235ENST00000495515 TAF6P49848 677 aa18.45■□□□□ 0.54
HDAC6-235ENST00000495515 MYO1EQ12965 1108 aa18.45■□□□□ 0.54
HDAC6-235ENST00000495515 SV2CQ496J9 727 aa18.45■□□□□ 0.54
HDAC6-235ENST00000495515 TIGD5Q53EQ6 642 aa18.45■□□□□ 0.54
HDAC6-235ENST00000495515 TCERG1LQ5VWI1 586 aa18.45■□□□□ 0.54
HDAC6-235ENST00000495515 ENOX1Q8TC92 643 aaKnown RBP18.45■□□□□ 0.54
HDAC6-235ENST00000495515 PLEKHO2Q8TD55 490 aa18.45■□□□□ 0.54
HDAC6-235ENST00000495515 BORCS6Q96GS4 357 aa18.45■□□□□ 0.54
HDAC6-235ENST00000495515 TCF25Q9BQ70 676 aa18.45■□□□□ 0.54
HDAC6-235ENST00000495515 MAGEC2Q9UBF1 373 aaPredicted RBP18.45■□□□□ 0.54
HDAC6-235ENST00000495515 STXBP5LQ9Y2K9 1186 aa18.45■□□□□ 0.54
HDAC6-235ENST00000495515 PTPRJQ12913 1337 aa18.45■□□□□ 0.54
HDAC6-235ENST00000495515 CTSAP10619 480 aa18.44■□□□□ 0.54
HDAC6-235ENST00000495515 GLUD2P49448 558 aa18.44■□□□□ 0.54
HDAC6-235ENST00000495515 LILRA4P59901 499 aa18.44■□□□□ 0.54
HDAC6-235ENST00000495515 MCCD1P59942 119 aaPredicted RBP18.44■□□□□ 0.54
HDAC6-235ENST00000495515 DLG4P78352 724 aa18.44■□□□□ 0.54
HDAC6-235ENST00000495515 SMC1AQ14683 1233 aaKnown RBP18.44■□□□□ 0.54
HDAC6-235ENST00000495515 ZSCAN23Q3MJ62 389 aa18.44■□□□□ 0.54
HDAC6-235ENST00000495515 DCAF17Q5H9S7 520 aaPredicted RBP18.44■□□□□ 0.54
HDAC6-235ENST00000495515 FAM171A1Q5VUB5 890 aa18.44■□□□□ 0.54
HDAC6-235ENST00000495515 PDXDC1Q6P996 788 aa18.44■□□□□ 0.54
HDAC6-235ENST00000495515 DSTYKQ6XUX3 929 aa18.44■□□□□ 0.54
HDAC6-235ENST00000495515 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.44■□□□□ 0.54
HDAC6-235ENST00000495515 GPR65Q8IYL9 337 aa18.44■□□□□ 0.54
HDAC6-235ENST00000495515 RNF168Q8IYW5 571 aaPredicted RBP18.44■□□□□ 0.54
HDAC6-235ENST00000495515 C3orf58Q8NDZ4 430 aa18.44■□□□□ 0.54
HDAC6-235ENST00000495515 GPR62Q9BZJ7 368 aa18.44■□□□□ 0.54
HDAC6-235ENST00000495515 GZF1Q9H116 711 aaPredicted RBP18.44■□□□□ 0.54
HDAC6-235ENST00000495515 ZBP1Q9H171 429 aa18.44■□□□□ 0.54
HDAC6-235ENST00000495515 DNAJC25Q9H1X3 360 aa18.44■□□□□ 0.54
HDAC6-235ENST00000495515 THAP9Q9H5L6 903 aa18.44■□□□□ 0.54
HDAC6-235ENST00000495515 MRPL17Q9NRX2 175 aaKnown RBP18.44■□□□□ 0.54
HDAC6-235ENST00000495515 SYN3O14994 580 aa18.43■□□□□ 0.54
HDAC6-235ENST00000495515 EFEMP2O95967 443 aa18.43■□□□□ 0.54
HDAC6-235ENST00000495515 C4BPAP04003 597 aaKnown RBP18.43■□□□□ 0.54
HDAC6-235ENST00000495515 TRIM49P0CI25 452 aa18.43■□□□□ 0.54
HDAC6-235ENST00000495515 TRIM49CP0CI26 452 aa18.43■□□□□ 0.54
HDAC6-235ENST00000495515 FOSL2P15408 326 aa18.43■□□□□ 0.54
HDAC6-235ENST00000495515 DNAJB1P25685 340 aa18.43■□□□□ 0.54
HDAC6-235ENST00000495515 CA8P35219 290 aa18.43■□□□□ 0.54
HDAC6-235ENST00000495515 BRCC3P46736 316 aa18.43■□□□□ 0.54
HDAC6-235ENST00000495515 MARSP56192 900 aaKnown RBP18.43■□□□□ 0.54
HDAC6-235ENST00000495515 CD300LGQ6UXG3 332 aa18.43■□□□□ 0.54
HDAC6-235ENST00000495515 CEP57Q86XR8 500 aa18.43■□□□□ 0.54
HDAC6-235ENST00000495515 APPL2Q8NEU8 664 aa18.43■□□□□ 0.54
HDAC6-235ENST00000495515 MYLIPQ8WY64 445 aa18.43■□□□□ 0.54
HDAC6-235ENST00000495515 ZNF516Q92618 1163 aa18.43■□□□□ 0.54
HDAC6-235ENST00000495515 SUSD3Q96L08 255 aa18.43■□□□□ 0.54
HDAC6-235ENST00000495515 GUCD1Q96NT3 240 aa18.43■□□□□ 0.54
HDAC6-235ENST00000495515 MED15Q96RN5 788 aa18.43■□□□□ 0.54
HDAC6-235ENST00000495515 TTPALQ9BTX7 342 aa18.43■□□□□ 0.54
HDAC6-235ENST00000495515 TMEM8AQ9HCN3 771 aa18.43■□□□□ 0.54
HDAC6-235ENST00000495515 NLRC5Q86WI3 1866 aa18.43■□□□□ 0.54
HDAC6-235ENST00000495515 KPNA7A9QM74 516 aa18.42■□□□□ 0.54
HDAC6-235ENST00000495515 PPEF2O14830 753 aa18.42■□□□□ 0.54
HDAC6-235ENST00000495515 FSCN2O14926 492 aa18.42■□□□□ 0.54
HDAC6-235ENST00000495515 CSPG5O95196 566 aa18.42■□□□□ 0.54
HDAC6-235ENST00000495515 CXCL14O95715 111 aa18.42■□□□□ 0.54
HDAC6-235ENST00000495515 CAVIN2O95810 425 aa18.42■□□□□ 0.54
HDAC6-235ENST00000495515 ATICP31939 592 aa18.42■□□□□ 0.54
HDAC6-235ENST00000495515 GCLMP48507 274 aa18.42■□□□□ 0.54
HDAC6-235ENST00000495515 AARSP49588 968 aaKnown RBP eCLIP18.42■□□□□ 0.54
HDAC6-235ENST00000495515 ERVFC1P60507 584 aa18.42■□□□□ 0.54
HDAC6-235ENST00000495515 MYL5Q02045 173 aa18.42■□□□□ 0.54
HDAC6-235ENST00000495515 DSG1Q02413 1049 aa18.42■□□□□ 0.54
HDAC6-235ENST00000495515 CREMQ03060 361 aa18.42■□□□□ 0.54
HDAC6-235ENST00000495515 CAMK1Q14012 370 aa18.42■□□□□ 0.54
HDAC6-235ENST00000495515 ADGRE1Q14246 886 aa18.42■□□□□ 0.54
HDAC6-235ENST00000495515 ZACNQ401N2 412 aa18.42■□□□□ 0.54
HDAC6-235ENST00000495515 ANO6Q4KMQ2 910 aa18.42■□□□□ 0.54
HDAC6-235ENST00000495515 PLPP4Q5VZY2 271 aa18.42■□□□□ 0.54
HDAC6-235ENST00000495515 KRT39Q6A163 491 aa18.42■□□□□ 0.54
HDAC6-235ENST00000495515 C11orf57Q6ZUT1 292 aaPredicted RBP18.42■□□□□ 0.54
HDAC6-235ENST00000495515 SV2AQ7L0J3 742 aa18.42■□□□□ 0.54
HDAC6-235ENST00000495515 CREBRFQ8IUR6 639 aa18.42■□□□□ 0.54
HDAC6-235ENST00000495515 HPDLQ96IR7 371 aa18.42■□□□□ 0.54
HDAC6-235ENST00000495515 VN1R3Q9BXE9 311 aa18.42■□□□□ 0.54
HDAC6-235ENST00000495515 NSUN3Q9H649 340 aaKnown RBP18.42■□□□□ 0.54
HDAC6-235ENST00000495515 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.42■□□□□ 0.54
HDAC6-235ENST00000495515 CHST7Q9NS84 486 aa18.42■□□□□ 0.54
HDAC6-235ENST00000495515 SIX4Q9UIU6 781 aa18.42■□□□□ 0.54
HDAC6-235ENST00000495515 PCDHB8Q9UN66 801 aa18.42■□□□□ 0.54
HDAC6-235ENST00000495515 NFE2L3Q9Y4A8 694 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms