RNA–Protein interactions for RNA: ENST00000495497.1

HDAC4-212, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 849 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-212ENST00000495497 DLG4P78352 724 aa21.01■□□□□ 0.95
HDAC4-212ENST00000495497 SKIV2LQ15477 1246 aaKnown RBP21.01■□□□□ 0.95
HDAC4-212ENST00000495497 RTP2Q5QGT7 225 aa21.01■□□□□ 0.95
HDAC4-212ENST00000495497 KIAA0319Q5VV43 1072 aa21.01■□□□□ 0.95
HDAC4-212ENST00000495497 PDE12Q6L8Q7 609 aaKnown RBP21.01■□□□□ 0.95
HDAC4-212ENST00000495497 KIAA1841Q6NSI8 718 aa21.01■□□□□ 0.95
HDAC4-212ENST00000495497 ZNF516Q92618 1163 aa21.01■□□□□ 0.95
HDAC4-212ENST00000495497 ANKRD36BP1Q96IX9 119 aa21.01■□□□□ 0.95
HDAC4-212ENST00000495497 CGRRF1Q99675 332 aa21.01■□□□□ 0.95
HDAC4-212ENST00000495497 DUSP9Q99956 384 aaKnown RBP21.01■□□□□ 0.95
HDAC4-212ENST00000495497 TLE6Q9H808 572 aa21.01■□□□□ 0.95
HDAC4-212ENST00000495497 PRDM6Q9NQX0 595 aa21.01■□□□□ 0.95
HDAC4-212ENST00000495497 ATG2AQ2TAZ0 1938 aa21.01■□□□□ 0.95
HDAC4-212ENST00000495497 LILRB3O75022 631 aa21■□□□□ 0.95
HDAC4-212ENST00000495497 ITGB3P05106 788 aa21■□□□□ 0.95
HDAC4-212ENST00000495497 URODP06132 367 aa21■□□□□ 0.95
HDAC4-212ENST00000495497 POLR2BP30876 1174 aaKnown RBP21■□□□□ 0.95
HDAC4-212ENST00000495497 PPP1R2P41236 205 aa21■□□□□ 0.95
HDAC4-212ENST00000495497 DSG1Q02413 1049 aa21■□□□□ 0.95
HDAC4-212ENST00000495497 PRSS55Q6UWB4 352 aaPredicted RBP21■□□□□ 0.95
HDAC4-212ENST00000495497 WDR49Q8IV35 697 aa21■□□□□ 0.95
HDAC4-212ENST00000495497 FAM186BQ8IYM0 893 aa21■□□□□ 0.95
HDAC4-212ENST00000495497 CSGALNACT2Q8N6G5 542 aa21■□□□□ 0.95
HDAC4-212ENST00000495497 CXorf38Q8TB03 319 aa21■□□□□ 0.95
HDAC4-212ENST00000495497 PARD3BQ8TEW8 1205 aa21■□□□□ 0.95
HDAC4-212ENST00000495497 RIN2Q8WYP3 895 aaPredicted RBP21■□□□□ 0.95
HDAC4-212ENST00000495497 TTPALQ9BTX7 342 aa21■□□□□ 0.95
HDAC4-212ENST00000495497 MRPL17Q9NRX2 175 aaKnown RBP21■□□□□ 0.95
HDAC4-212ENST00000495497 TMEM63CQ9P1W3 806 aa21■□□□□ 0.95
HDAC4-212ENST00000495497 STK39Q9UEW8 545 aa21■□□□□ 0.95
HDAC4-212ENST00000495497 AGAP1Q9UPQ3 857 aa21■□□□□ 0.95
HDAC4-212ENST00000495497 MYO7AQ13402 2215 aa21■□□□□ 0.95
HDAC4-212ENST00000495497 CETN3O15182 167 aa20.99■□□□□ 0.95
HDAC4-212ENST00000495497 LINC01565O15544 149 aa20.99■□□□□ 0.95
HDAC4-212ENST00000495497 TRAPPC3O43617 180 aa20.99■□□□□ 0.95
HDAC4-212ENST00000495497 TNNC2P02585 160 aa20.99■□□□□ 0.95
HDAC4-212ENST00000495497 KRT19P08727 400 aa20.99■□□□□ 0.95
HDAC4-212ENST00000495497 RPL17P18621 184 aaKnown RBP20.99■□□□□ 0.95
HDAC4-212ENST00000495497 PSMC2P35998 433 aaKnown RBP20.99■□□□□ 0.95
HDAC4-212ENST00000495497 NLRP12P59046 1061 aa20.99■□□□□ 0.95
HDAC4-212ENST00000495497 RBM10P98175 930 aaKnown RBP20.99■□□□□ 0.95
HDAC4-212ENST00000495497 LRRC63Q05C16 580 aa20.99■□□□□ 0.95
HDAC4-212ENST00000495497 ELAVL2Q12926 359 aaKnown RBP20.99■□□□□ 0.95
HDAC4-212ENST00000495497 PAK1Q13153 545 aa20.99■□□□□ 0.95
HDAC4-212ENST00000495497 BMS1Q14692 1282 aaKnown RBP20.99■□□□□ 0.95
HDAC4-212ENST00000495497 DUOXA2Q1HG44 320 aa20.99■□□□□ 0.95
HDAC4-212ENST00000495497 CCDC183Q5T5S1 534 aa20.99■□□□□ 0.95
HDAC4-212ENST00000495497 TTI2Q6NXR4 508 aa20.99■□□□□ 0.95
HDAC4-212ENST00000495497 ZC3H3Q8IXZ2 948 aaKnown RBP20.99■□□□□ 0.95
HDAC4-212ENST00000495497 SIX4Q9UIU6 781 aa20.99■□□□□ 0.95
HDAC4-212ENST00000495497 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.99■□□□□ 0.95
HDAC4-212ENST00000495497 REV3LO60673 3130 aa20.98■□□□□ 0.95
HDAC4-212ENST00000495497 FGFR3P22607 806 aa20.98■□□□□ 0.95
HDAC4-212ENST00000495497 LILRA4P59901 499 aa20.98■□□□□ 0.95
HDAC4-212ENST00000495497 FKBP3Q00688 224 aaKnown RBP20.98■□□□□ 0.95
HDAC4-212ENST00000495497 DUSP6Q16828 381 aa20.98■□□□□ 0.95
HDAC4-212ENST00000495497 DPCR1Q3MIW9 517 aa20.98■□□□□ 0.95
HDAC4-212ENST00000495497 C1orf220Q5T0J3 134 aa20.98■□□□□ 0.95
HDAC4-212ENST00000495497 LLGL2Q6P1M3 1020 aa20.98■□□□□ 0.95
HDAC4-212ENST00000495497 DSTYKQ6XUX3 929 aa20.98■□□□□ 0.95
HDAC4-212ENST00000495497 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.98■□□□□ 0.95
HDAC4-212ENST00000495497 RBM43Q6ZSC3 357 aaKnown RBP20.98■□□□□ 0.95
HDAC4-212ENST00000495497 TRAPPC11Q7Z392 1133 aa20.98■□□□□ 0.95
HDAC4-212ENST00000495497 GLYCTKQ8IVS8 523 aa20.98■□□□□ 0.95
HDAC4-212ENST00000495497 SUSD3Q96L08 255 aa20.98■□□□□ 0.95
HDAC4-212ENST00000495497 KLHL5Q96PQ7 755 aa20.98■□□□□ 0.95
HDAC4-212ENST00000495497 TIMM13Q9Y5L4 95 aaPredicted RBP20.98■□□□□ 0.95
HDAC4-212ENST00000495497 IRAK3Q9Y616 596 aa20.98■□□□□ 0.95
HDAC4-212ENST00000495497 MAPK13O15264 365 aa20.97■□□□□ 0.95
HDAC4-212ENST00000495497 CLASP2O75122 1294 aaKnown RBP20.97■□□□□ 0.95
HDAC4-212ENST00000495497 CNPP09543 421 aaKnown RBP20.97■□□□□ 0.95
HDAC4-212ENST00000495497 TRIM49P0CI25 452 aa20.97■□□□□ 0.95
HDAC4-212ENST00000495497 TRIM49CP0CI26 452 aa20.97■□□□□ 0.95
HDAC4-212ENST00000495497 VAMP7P51809 220 aa20.97■□□□□ 0.95
HDAC4-212ENST00000495497 CAVIN1Q6NZI2 390 aaKnown RBP20.97■□□□□ 0.95
HDAC4-212ENST00000495497 EP400NLQ6ZTU2 488 aa20.97■□□□□ 0.95
HDAC4-212ENST00000495497 VN1R2Q8NFZ6 395 aa20.97■□□□□ 0.95
HDAC4-212ENST00000495497 LNX1Q8TBB1 728 aaPredicted RBP20.97■□□□□ 0.95
HDAC4-212ENST00000495497 PPP2R3CQ969Q6 453 aa20.97■□□□□ 0.95
HDAC4-212ENST00000495497 MED15Q96RN5 788 aa20.97■□□□□ 0.95
HDAC4-212ENST00000495497 ITGA11Q9UKX5 1188 aa20.97■□□□□ 0.95
HDAC4-212ENST00000495497 BICDL2A1A5D9 508 aa20.96■□□□□ 0.95
HDAC4-212ENST00000495497 M0QZQ0 153 aa20.96■□□□□ 0.95
HDAC4-212ENST00000495497 TEX28O15482 410 aa20.96■□□□□ 0.95
HDAC4-212ENST00000495497 CST3P01034 146 aaPredicted RBP20.96■□□□□ 0.95
HDAC4-212ENST00000495497 EPB41P11171 864 aaKnown RBP20.96■□□□□ 0.95
HDAC4-212ENST00000495497 AARSP49588 968 aaKnown RBP eCLIP20.96■□□□□ 0.95
HDAC4-212ENST00000495497 TAF6P49848 677 aa20.96■□□□□ 0.95
HDAC4-212ENST00000495497 RBP5P82980 135 aa20.96■□□□□ 0.95
HDAC4-212ENST00000495497 PSMD5Q16401 504 aa20.96■□□□□ 0.95
HDAC4-212ENST00000495497 MLKLQ8NB16 471 aa20.96■□□□□ 0.95
HDAC4-212ENST00000495497 TMC2Q8TDI7 906 aa20.96■□□□□ 0.95
HDAC4-212ENST00000495497 PIK3R5Q8WYR1 880 aa20.96■□□□□ 0.95
HDAC4-212ENST00000495497 BORCS6Q96GS4 357 aa20.96■□□□□ 0.95
HDAC4-212ENST00000495497 SENP8Q96LD8 212 aa20.96■□□□□ 0.95
HDAC4-212ENST00000495497 RXFP1Q9HBX9 757 aa20.96■□□□□ 0.95
HDAC4-212ENST00000495497 CLDND1Q9NY35 253 aa20.96■□□□□ 0.95
HDAC4-212ENST00000495497 PCDHB8Q9UN66 801 aa20.96■□□□□ 0.95
HDAC4-212ENST00000495497 SSX2IPQ9Y2D8 614 aa20.96■□□□□ 0.95
HDAC4-212ENST00000495497 COL6A3P12111 3177 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms