RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 RPS6KC1Q96S38 1066 aa17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 SENP7Q9BQF6 1050 aa17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 APOBEC3GQ9HC16 384 aaKnown RBP17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 FBXO40Q9UH90 709 aa17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 AGO2Q9UKV8 859 aaKnown RBP17.61■□□□□ 0.41
CCDC88B-210ENST00000494566 CCT8L1PA6NM43 557 aa17.6■□□□□ 0.41
CCDC88B-210ENST00000494566 VNN1O95497 513 aa17.6■□□□□ 0.41
CCDC88B-210ENST00000494566 CTNNA2P26232 953 aa17.6■□□□□ 0.41
CCDC88B-210ENST00000494566 SNRPFP62306 86 aaKnown RBP17.6■□□□□ 0.41
CCDC88B-210ENST00000494566 SIX1Q15475 284 aaPredicted RBP17.6■□□□□ 0.41
CCDC88B-210ENST00000494566 MIS18BP1Q6P0N0 1132 aa17.6■□□□□ 0.41
CCDC88B-210ENST00000494566 CRELD2Q6UXH1 353 aaPredicted RBP17.6■□□□□ 0.41
CCDC88B-210ENST00000494566 OR5B17Q8NGF7 314 aa17.6■□□□□ 0.41
CCDC88B-210ENST00000494566 ATXN2LQ8WWM7 1075 aaKnown RBP17.6■□□□□ 0.41
CCDC88B-210ENST00000494566 KLRG1Q96E93 195 aa17.6■□□□□ 0.41
CCDC88B-210ENST00000494566 SGSM3Q96HU1 749 aa17.6■□□□□ 0.41
CCDC88B-210ENST00000494566 C11orf70Q9BRQ4 267 aa17.6■□□□□ 0.41
CCDC88B-210ENST00000494566 WNT8AQ9H1J5 351 aa17.6■□□□□ 0.41
CCDC88B-210ENST00000494566 ZNF302Q9NR11 478 aa17.6■□□□□ 0.41
CCDC88B-210ENST00000494566 SAMD15Q9P1V8 674 aa17.6■□□□□ 0.41
CCDC88B-210ENST00000494566 SPATA31C2B4DYI2 1134 aa17.6■□□□□ 0.41
CCDC88B-210ENST00000494566 MARK3P27448 753 aa17.6■□□□□ 0.41
CCDC88B-210ENST00000494566 MYO1EQ12965 1108 aa17.6■□□□□ 0.41
CCDC88B-210ENST00000494566 TMEM270Q6UE05 265 aa17.6■□□□□ 0.41
CCDC88B-210ENST00000494566 CCDC63Q8NA47 563 aa17.6■□□□□ 0.41
CCDC88B-210ENST00000494566 TLCD1Q96CP7 247 aa17.6■□□□□ 0.41
CCDC88B-210ENST00000494566 CHST7Q9NS84 486 aa17.6■□□□□ 0.41
CCDC88B-210ENST00000494566 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.6■□□□□ 0.41
CCDC88B-210ENST00000494566 PCDHA3Q9Y5H8 950 aa17.6■□□□□ 0.41
CCDC88B-210ENST00000494566 MROH7Q68CQ1 1323 aa17.6■□□□□ 0.41
CCDC88B-210ENST00000494566 COILP38432 576 aaPredicted RBP17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 STRN3Q13033 797 aa17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 DHX34Q14147 1143 aaKnown RBP17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 GNPTABQ3T906 1256 aa17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 XKR3Q5GH77 459 aa17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 YTHDF3Q7Z739 585 aaKnown RBP17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 ZBTB33Q86T24 672 aa17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 SLC17A8Q8NDX2 589 aa17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 RDM1Q8NG50 284 aa17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 KCNV2Q8TDN2 545 aa17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 C9orf72Q96LT7 481 aa17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 TXLNGYQ9BZA5 131 aa17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 RBAKQ9NYW8 714 aaPredicted RBP17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 ZNF112Q9UJU3 913 aa17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 USTQ9Y2C2 406 aa17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 MYPNQ86TC9 1320 aa17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 PMM2O15305 246 aa17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 CHRNA3P32297 505 aa17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 HIRAP54198 1017 aaPredicted RBP17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 RWDD2BP57060 319 aa17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 ELF3P78545 371 aaPredicted RBP17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 NAA25Q14CX7 972 aa17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 CYP4F22Q6NT55 531 aa17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 TMEM130Q8N3G9 435 aa17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 DEPTORQ8TB45 409 aa17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 ZBTB10Q96DT7 871 aa17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 ZNF317Q96PQ6 595 aaPredicted RBP17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 RASAL2Q9UJF2 1139 aa17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 ADAMTS5Q9UNA0 930 aa17.59■□□□□ 0.41
CCDC88B-210ENST00000494566 K7ERI5 159 aa17.58■□□□□ 0.41
CCDC88B-210ENST00000494566 EXTL3O43909 919 aa17.58■□□□□ 0.41
CCDC88B-210ENST00000494566 CCDC50Q8IVM0 306 aa17.58■□□□□ 0.41
CCDC88B-210ENST00000494566 MCOLN2Q8IZK6 566 aa17.58■□□□□ 0.41
CCDC88B-210ENST00000494566 VTI1AQ96AJ9 217 aa17.58■□□□□ 0.41
CCDC88B-210ENST00000494566 CDC42EP4Q9H3Q1 356 aaKnown RBP17.58■□□□□ 0.41
CCDC88B-210ENST00000494566 LCTP09848 1927 aa17.58■□□□□ 0.41
CCDC88B-210ENST00000494566 TMEM120BA0PK00 339 aa17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 FAM187AA6NFU0 413 aa17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 MAFGO15525 162 aa17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 RIPK2O43353 540 aa17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 OATP04181 439 aa17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 UNGP13051 313 aaPredicted RBP17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 GARTP22102 1010 aa17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 GBP2P32456 591 aaPredicted RBP17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 TNFSF9P41273 254 aa17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 AUHQ13825 339 aaKnown RBP17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 ZNF394Q53GI3 561 aa17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 WDR44Q5JSH3 913 aa17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 EMC10Q5UCC4 262 aa17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 EXOC3L1Q86VI1 746 aa17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 TRIM50Q86XT4 487 aa17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 SLC16A10Q8TF71 515 aa17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 PSPC1Q8WXF1 523 aaKnown RBP17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 MSTO1Q9BUK6 570 aa17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 NOD2Q9HC29 1040 aa17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 GEMIN8Q9NWZ8 242 aaKnown RBP17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 PCDHB4Q9Y5E5 795 aa17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 SPAG7O75391 227 aa17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 MTA2O94776 668 aa17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 XRRA1Q6P2D8 792 aa17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 CDR2LQ86X02 465 aaPredicted RBP17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 CYP4X1Q8N118 509 aa17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 ANKS4BQ8N8V4 417 aa17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 ARHGEF2Q92974 986 aaKnown RBP17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 PAGR1Q9BTK6 254 aa17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 C17orf75Q9HAS0 396 aa17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 MTRF1LQ9UGC7 380 aaKnown RBP17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 R3HDM2Q9Y2K5 976 aaKnown RBP17.58■□□□□ 0.4
CCDC88B-210ENST00000494566 FZD9O00144 591 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms