RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, human

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-222	ENST00000493919	EFCAB8	A8MWE9	144 aa		12.36	□□□□□ -0.43
BRCA1-222	ENST00000493919	MUSK	O15146	869 aa		12.36	□□□□□ -0.43
BRCA1-222	ENST00000493919	KCNJ13	O60928	360 aa		12.36	□□□□□ -0.43
BRCA1-222	ENST00000493919	TEC	P42680	631 aa		12.36	□□□□□ -0.43
BRCA1-222	ENST00000493919	ZNF200	P98182	395 aa	Predicted RBP	12.36	□□□□□ -0.43
BRCA1-222	ENST00000493919	PRKCE	Q02156	737 aa		12.36	□□□□□ -0.43
BRCA1-222	ENST00000493919	CYP4A11	Q02928	519 aa		12.36	□□□□□ -0.43
BRCA1-222	ENST00000493919	CEBPZ	Q03701	1054 aa	Known RBP	12.36	□□□□□ -0.43
BRCA1-222	ENST00000493919	PTPN11	Q06124	597 aa	Predicted RBP	12.36	□□□□□ -0.43
BRCA1-222	ENST00000493919	SPIRE1	Q08AE8	756 aa		12.36	□□□□□ -0.43
BRCA1-222	ENST00000493919	TMEM266	Q2M3C6	531 aa		12.36	□□□□□ -0.43
BRCA1-222	ENST00000493919	PLEKHG6	Q3KR16	790 aa		12.36	□□□□□ -0.43
BRCA1-222	ENST00000493919	NAALADL2	Q58DX5	795 aa		12.36	□□□□□ -0.43
BRCA1-222	ENST00000493919	SPECC1	Q5M775	1068 aa		12.36	□□□□□ -0.43
BRCA1-222	ENST00000493919	PPP1R15B	Q5SWA1	713 aa		12.36	□□□□□ -0.43
BRCA1-222	ENST00000493919	POTEB	Q6S5H4	581 aa		12.36	□□□□□ -0.43
BRCA1-222	ENST00000493919	B3GNT9	Q6UX72	402 aa		12.36	□□□□□ -0.43
BRCA1-222	ENST00000493919	PLPPR4	Q7Z2D5	763 aa		12.36	□□□□□ -0.43
BRCA1-222	ENST00000493919	CHPF	Q8IZ52	775 aa		12.36	□□□□□ -0.43
BRCA1-222	ENST00000493919	GPR161	Q8N6U8	529 aa	Known RBP	12.36	□□□□□ -0.43
BRCA1-222	ENST00000493919	RDM1	Q8NG50	284 aa		12.36	□□□□□ -0.43
BRCA1-222	ENST00000493919	AFAP1L1	Q8TED9	768 aa		12.36	□□□□□ -0.43
BRCA1-222	ENST00000493919	DMAP1	Q9NPF5	467 aa	Predicted RBP	12.36	□□□□□ -0.43
BRCA1-222	ENST00000493919	CLIC5	Q9NZA1	410 aa		12.36	□□□□□ -0.43
BRCA1-222	ENST00000493919	SUCLA2	Q9P2R7	463 aa	Predicted RBP	12.36	□□□□□ -0.43
BRCA1-222	ENST00000493919	LAMA3	Q16787	3333 aa		12.36	□□□□□ -0.43
BRCA1-222	ENST00000493919		H3BQF6	201 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	SHOX2	O60902	331 aa	Predicted RBP	12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	PFDN1	O60925	122 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	ZSCAN22	P10073	491 aa	Predicted RBP	12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	SKIV2L2	P42285	1042 aa	Known RBP	12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	SLC26A2	P50443	739 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	SNX16	P57768	344 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	PDE1B	Q01064	536 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	BRD3	Q15059	726 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	GRIK4	Q16099	956 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	UNC5D	Q6UXZ4	953 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	SRGAP1	Q7Z6B7	1085 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	ZNF554	Q86TJ5	538 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	SNX32	Q86XE0	403 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	CNNM3	Q8NE01	707 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	TRAPPC12	Q8WVT3	735 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	CFAP36	Q96G28	342 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	SNF8	Q96H20	258 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	CEP295NL	Q96MC4	621 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	PSKH2	Q96QS6	385 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	LXN	Q9BS40	222 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	SEPT9	Q9UHD8	586 aa	Predicted RBP	12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	ASB3	Q9Y575	518 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	MAFB	Q9Y5Q3	323 aa	Predicted RBP	12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	KAT6A	Q92794	2004 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	TLDC2	A0PJX2	215 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919		H0YGN5	161 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	TREH	O43280	583 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	F13A1	P00488	732 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	CD4	P01730	458 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	INSRR	P14616	1297 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	RAG1	P15918	1043 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	BNIP1	Q12981	228 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	HIC1	Q14526	733 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	C10orf62	Q5T681	223 aa	Predicted RBP	12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	ZNF449	Q6P9G9	518 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	CRELD2	Q6UXH1	353 aa	Predicted RBP	12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	IFNLR1	Q8IU57	520 aa	Predicted RBP	12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	VPS52	Q8N1B4	723 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	ATP8B4	Q8TF62	1192 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	SKA1	Q96BD8	255 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	TRIM43	Q96BQ3	446 aa	Predicted RBP	12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	DYDC2	Q96IM9	177 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	DRC3	Q9H069	523 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	HIPK3	Q9H422	1215 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	PARVB	Q9HBI1	364 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	IL1RAPL1	Q9NZN1	696 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	TUBE1	Q9UJT0	475 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	GGA2	Q9UJY4	613 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	C2CD2	Q9Y426	696 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	NRCAM	Q92823	1304 aa		12.35	□□□□□ -0.43
BRCA1-222	ENST00000493919	TRIP12	Q14669	1992 aa	Predicted RBP	12.34	□□□□□ -0.43
BRCA1-222	ENST00000493919	LTBP2	Q14767	1821 aa		12.34	□□□□□ -0.43
BRCA1-222	ENST00000493919	LRRD1	A4D1F6	860 aa		12.34	□□□□□ -0.43
BRCA1-222	ENST00000493919	MYO1F	O00160	1098 aa		12.34	□□□□□ -0.43
BRCA1-222	ENST00000493919	LAD1	O00515	517 aa		12.34	□□□□□ -0.43
BRCA1-222	ENST00000493919	ZNF862	O60290	1169 aa		12.34	□□□□□ -0.43
BRCA1-222	ENST00000493919	AP2B1	P63010	937 aa		12.34	□□□□□ -0.43
BRCA1-222	ENST00000493919	ATP2C1	P98194	919 aa	Predicted RBP	12.34	□□□□□ -0.43
BRCA1-222	ENST00000493919	PAK2	Q13177	524 aa		12.34	□□□□□ -0.43
BRCA1-222	ENST00000493919	LAPTM5	Q13571	262 aa		12.34	□□□□□ -0.43
BRCA1-222	ENST00000493919	SIM2	Q14190	667 aa	Predicted RBP	12.34	□□□□□ -0.43
BRCA1-222	ENST00000493919	CTTN	Q14247	550 aa	Known RBP	12.34	□□□□□ -0.43
BRCA1-222	ENST00000493919	EPHA7	Q15375	998 aa		12.34	□□□□□ -0.43
BRCA1-222	ENST00000493919	SLC44A4	Q53GD3	710 aa		12.34	□□□□□ -0.43
BRCA1-222	ENST00000493919	C14orf80	Q86SX3	495 aa		12.34	□□□□□ -0.43
BRCA1-222	ENST00000493919	C4orf32	Q8N8J7	132 aa		12.34	□□□□□ -0.43
BRCA1-222	ENST00000493919	HNRNPLL	Q8WVV9	542 aa	Known RBP	12.34	□□□□□ -0.43
BRCA1-222	ENST00000493919	DDX27	Q96GQ7	796 aa	Known RBP	12.34	□□□□□ -0.43
BRCA1-222	ENST00000493919	FAM167A	Q96KS9	214 aa		12.34	□□□□□ -0.43
BRCA1-222	ENST00000493919	EIF2AK1	Q9BQI3	630 aa	Known RBP	12.34	□□□□□ -0.43
BRCA1-222	ENST00000493919	GBP3	Q9H0R5	595 aa		12.34	□□□□□ -0.43
BRCA1-222	ENST00000493919	GOLPH3L	Q9H4A5	285 aa		12.34	□□□□□ -0.43
BRCA1-222	ENST00000493919	ACTR5	Q9H9F9	607 aa	Predicted RBP	12.34	□□□□□ -0.43

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