RNA–Protein interactions for RNA: ENST00000493792.1

TRAPPC12-222, Transcript of trafficking protein particle complex 12, human

TSL 2

Gene TRAPPC12, Length 567 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRAPPC12-222	ENST00000493792	CLASP2	O75122	1294 aa	Known RBP	11.3	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	LDHA	P00338	332 aa	Known RBP	11.3	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	RPN1	P04843	607 aa	Known RBP	11.3	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	MYL1	P05976	194 aa		11.3	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	GART	P22102	1010 aa		11.3	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	ADSS	P30520	456 aa		11.3	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	BRCC3	P46736	316 aa		11.3	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	GUCY2F	P51841	1108 aa		11.3	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	PTPN14	Q15678	1187 aa		11.3	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	USP41	Q3LFD5	358 aa		11.3	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	XKR4	Q5GH76	650 aa		11.3	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	JADE1	Q6IE81	842 aa		11.3	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	ANKRD54	Q6NXT1	300 aa		11.3	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	KANK3	Q6NY19	840 aa		11.3	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	DCLRE1A	Q6PJP8	1040 aa		11.3	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	FRMD5	Q7Z6J6	570 aa		11.3	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	ADSSL1	Q8N142	457 aa		11.3	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	BEST2	Q8NFU1	509 aa		11.3	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	NKD2	Q969F2	451 aa	Predicted RBP	11.3	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	CBWD1	Q9BRT8	395 aa		11.3	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	APOL5	Q9BWW9	433 aa		11.3	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	SMOC2	Q9H3U7	446 aa		11.3	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	TUBGCP4	Q9UGJ1	667 aa		11.3	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	CDH22	Q9UJ99	828 aa		11.3	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	CPSF3	Q9UKF6	684 aa	Known RBP	11.3	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	UBQLN1	Q9UMX0	589 aa	Known RBP	11.3	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	STYXL1	Q9Y6J8	313 aa		11.3	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	EP300	Q09472	2414 aa	Predicted RBP	11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	CLIC2	O15247	247 aa		11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	TRAPPC3	O43617	180 aa		11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	KLRC4	O43908	158 aa		11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	FAM189A1	O60320	539 aa		11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	NFIC	P08651	508 aa		11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	HOXB8	P17481	243 aa	Predicted RBP	11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	MCM4	P33991	863 aa		11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	CYP2J2	P51589	502 aa		11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	FAM160A1	Q05DH4	1040 aa		11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	ELAVL2	Q12926	359 aa	Known RBP	11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	TMEM132D	Q14C87	1099 aa		11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	UPP1	Q16831	310 aa		11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	ASTL	Q6HA08	431 aa	Predicted RBP	11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	PRSS55	Q6UWB4	352 aa	Predicted RBP	11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	HS2ST1	Q7LGA3	356 aa		11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	CD302	Q8IX05	232 aa		11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	UBALD2	Q8IYN6	164 aa		11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	FMR1NB	Q8N0W7	255 aa	Predicted RBP	11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	GPD1L	Q8N335	351 aa		11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	ZNF507	Q8TCN5	953 aa		11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	SCFD1	Q8WVM8	642 aa		11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	KLHL5	Q96PQ7	755 aa		11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	TTPAL	Q9BTX7	342 aa		11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	RBAK	Q9NYW8	714 aa	Predicted RBP	11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	HOOK1	Q9UJC3	728 aa	Known RBP	11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	SORCS3	Q9UPU3	1222 aa		11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	HCFC2	Q9Y5Z7	792 aa		11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	UBE4B	O95155	1302 aa		11.29	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	MED19	A0JLT2	244 aa	Predicted RBP	11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	TMEM189-UBE2V1	I3L0A0	370 aa		11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	EXTL3	O43909	919 aa		11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	KIN	O60870	393 aa	Known RBP	11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	GADD45B	O75293	160 aa	Predicted RBP	11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	ADH1A	P07327	375 aa		11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	CNP	P09543	421 aa	Known RBP	11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	RPL17	P18621	184 aa	Known RBP	11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	SP100	P23497	879 aa	Predicted RBP	11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	IGFBP6	P24592	240 aa	Predicted RBP	11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	RPL9	P32969	192 aa	Known RBP	11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	CLCN5	P51795	746 aa		11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	TFAM	Q00059	246 aa	Known RBP	11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	DSG1	Q02413	1049 aa		11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	EHHADH	Q08426	723 aa		11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	DPYD	Q12882	1025 aa		11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	STK4	Q13043	487 aa		11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	PSMD2	Q13200	908 aa		11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	PNOC	Q13519	176 aa		11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	EPM2AIP1	Q7L775	607 aa	Predicted RBP	11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	PPFIBP1	Q86W92	1011 aa		11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	PALB2	Q86YC2	1186 aa		11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	TMEM130	Q8N3G9	435 aa		11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	RDH13	Q8NBN7	331 aa		11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	ZSWIM2	Q8NEG5	633 aa		11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	CASP10	Q92851	521 aa		11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	ASB7	Q9H672	318 aa		11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	AGPAT3	Q9NRZ7	376 aa		11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	HSPBP1	Q9NZL4	362 aa		11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	IRAK3	Q9Y616	596 aa		11.28	□□□□□ -0.6
TRAPPC12-222	ENST00000493792	ZNF233	A6NK53	670 aa		11.27	□□□□□ -0.61
TRAPPC12-222	ENST00000493792	C2CD4D	B7Z1M9	353 aa		11.27	□□□□□ -0.61
TRAPPC12-222	ENST00000493792	KIAA0391	O15091	583 aa	Known RBP	11.27	□□□□□ -0.61
TRAPPC12-222	ENST00000493792	TEX28	O15482	410 aa		11.27	□□□□□ -0.61
TRAPPC12-222	ENST00000493792	PI15	O43692	258 aa		11.27	□□□□□ -0.61
TRAPPC12-222	ENST00000493792	KIF20A	O95235	890 aa		11.27	□□□□□ -0.61
TRAPPC12-222	ENST00000493792	IL18RAP	O95256	599 aa		11.27	□□□□□ -0.61
TRAPPC12-222	ENST00000493792	SPATA31D3	P0C874	917 aa		11.27	□□□□□ -0.61
TRAPPC12-222	ENST00000493792	EPCAM	P16422	314 aa		11.27	□□□□□ -0.61
TRAPPC12-222	ENST00000493792	TKT	P29401	623 aa	Known RBP	11.27	□□□□□ -0.61
TRAPPC12-222	ENST00000493792	HOXD13	P35453	343 aa		11.27	□□□□□ -0.61
TRAPPC12-222	ENST00000493792	PSMD5	Q16401	504 aa		11.27	□□□□□ -0.61
TRAPPC12-222	ENST00000493792	KNOP1	Q1ED39	458 aa	Known RBP	11.27	□□□□□ -0.61
TRAPPC12-222	ENST00000493792	RTP2	Q5QGT7	225 aa		11.27	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms