RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 ARID2Q68CP9 1835 aa13.29□□□□□ -0.28
UPF3A-210ENST00000493727 CACNA1AO00555 2505 aa13.29□□□□□ -0.28
UPF3A-210ENST00000493727 IGKV6-21A0A0C4DH24 114 aa13.29□□□□□ -0.28
UPF3A-210ENST00000493727 PVALEFA0A1B0GWK0 134 aa13.29□□□□□ -0.28
UPF3A-210ENST00000493727 PER2O15055 1255 aa13.29□□□□□ -0.28
UPF3A-210ENST00000493727 MAFO75444 373 aaPredicted RBP13.29□□□□□ -0.28
UPF3A-210ENST00000493727 DKK1O94907 266 aa13.29□□□□□ -0.28
UPF3A-210ENST00000493727 GAP43P17677 238 aa13.29□□□□□ -0.28
UPF3A-210ENST00000493727 AVPR2P30518 371 aa13.29□□□□□ -0.28
UPF3A-210ENST00000493727 ERVFC1P60507 584 aa13.29□□□□□ -0.28
UPF3A-210ENST00000493727 ISM2Q6H9L7 571 aa13.29□□□□□ -0.28
UPF3A-210ENST00000493727 CNNM4Q6P4Q7 775 aa13.29□□□□□ -0.28
UPF3A-210ENST00000493727 RBM43Q6ZSC3 357 aaKnown RBP13.29□□□□□ -0.28
UPF3A-210ENST00000493727 MYCT1Q8N699 235 aa13.29□□□□□ -0.28
UPF3A-210ENST00000493727 TCP11Q8WWU5 503 aa13.29□□□□□ -0.28
UPF3A-210ENST00000493727 KIFAP3Q92845 792 aa13.29□□□□□ -0.28
UPF3A-210ENST00000493727 DNAJC19Q96DA6 116 aa13.29□□□□□ -0.28
UPF3A-210ENST00000493727 IFT74Q96LB3 600 aa13.29□□□□□ -0.28
UPF3A-210ENST00000493727 TRAIPQ9BWF2 469 aa13.29□□□□□ -0.28
UPF3A-210ENST00000493727 S1PR5Q9H228 398 aa13.29□□□□□ -0.28
UPF3A-210ENST00000493727 DHX33Q9H6R0 707 aaKnown RBP13.29□□□□□ -0.28
UPF3A-210ENST00000493727 GPRC5CQ9NQ84 441 aa13.29□□□□□ -0.28
UPF3A-210ENST00000493727 ENTPD7Q9NQZ7 604 aa13.29□□□□□ -0.28
UPF3A-210ENST00000493727 RNF19AQ9NV58 838 aa13.29□□□□□ -0.28
UPF3A-210ENST00000493727 DNAAF2Q9NVR5 837 aaKnown RBP13.29□□□□□ -0.28
UPF3A-210ENST00000493727 MAN1B1Q9UKM7 699 aa13.29□□□□□ -0.28
UPF3A-210ENST00000493727 SFI1A8K8P3 1242 aa13.28□□□□□ -0.28
UPF3A-210ENST00000493727 CCDC192P0DO97 292 aa13.28□□□□□ -0.28
UPF3A-210ENST00000493727 RAB27AP51159 221 aa13.28□□□□□ -0.28
UPF3A-210ENST00000493727 DMP1Q13316 513 aaPredicted RBP13.28□□□□□ -0.28
UPF3A-210ENST00000493727 KCNB1Q14721 858 aa13.28□□□□□ -0.28
UPF3A-210ENST00000493727 PLPP4Q5VZY2 271 aa13.28□□□□□ -0.28
UPF3A-210ENST00000493727 SYCE2Q6PIF2 218 aa13.28□□□□□ -0.28
UPF3A-210ENST00000493727 LYSMD3Q7Z3D4 306 aa13.28□□□□□ -0.28
UPF3A-210ENST00000493727 SFR1Q86XK3 245 aa13.28□□□□□ -0.28
UPF3A-210ENST00000493727 TRIML1Q8N9V2 468 aa13.28□□□□□ -0.28
UPF3A-210ENST00000493727 RNF169Q8NCN4 708 aa13.28□□□□□ -0.28
UPF3A-210ENST00000493727 PSPC1Q8WXF1 523 aaKnown RBP13.28□□□□□ -0.28
UPF3A-210ENST00000493727 TMEM143Q96AN5 459 aa13.28□□□□□ -0.28
UPF3A-210ENST00000493727 CCDC97Q96F63 343 aaPredicted RBP13.28□□□□□ -0.28
UPF3A-210ENST00000493727 TCF25Q9BQ70 676 aa13.28□□□□□ -0.28
UPF3A-210ENST00000493727 VRTNQ9H8Y1 702 aa13.28□□□□□ -0.28
UPF3A-210ENST00000493727 POLD4Q9HCU8 107 aa13.28□□□□□ -0.28
UPF3A-210ENST00000493727 XPNPEP1Q9NQW7 623 aa13.28□□□□□ -0.28
UPF3A-210ENST00000493727 TBC1D7Q9P0N9 293 aa13.28□□□□□ -0.28
UPF3A-210ENST00000493727 FRMD3A2A2Y4 597 aa13.27□□□□□ -0.29
UPF3A-210ENST00000493727 PROB1E7EW31 1015 aa13.27□□□□□ -0.29
UPF3A-210ENST00000493727 KLRC4O43908 158 aa13.27□□□□□ -0.29
UPF3A-210ENST00000493727 PDGFBP01127 241 aaPredicted RBP13.27□□□□□ -0.29
UPF3A-210ENST00000493727 PLS3P13797 630 aa13.27□□□□□ -0.29
UPF3A-210ENST00000493727 HOXB8P17481 243 aaPredicted RBP13.27□□□□□ -0.29
UPF3A-210ENST00000493727 ALDH7A1P49419 539 aaKnown RBP13.27□□□□□ -0.29
UPF3A-210ENST00000493727 TYRO3Q06418 890 aa13.27□□□□□ -0.29
UPF3A-210ENST00000493727 PPP2R5AQ15172 486 aa13.27□□□□□ -0.29
UPF3A-210ENST00000493727 STX1AQ16623 288 aa13.27□□□□□ -0.29
UPF3A-210ENST00000493727 CLLU1OSQ5K130 101 aa13.27□□□□□ -0.29
UPF3A-210ENST00000493727 FAM26FQ5R3K3 315 aa13.27□□□□□ -0.29
UPF3A-210ENST00000493727 L1TD1Q5T7N2 865 aaKnown RBP13.27□□□□□ -0.29
UPF3A-210ENST00000493727 NT5DC1Q5TFE4 455 aa13.27□□□□□ -0.29
UPF3A-210ENST00000493727 TWF2Q6IBS0 349 aaKnown RBP13.27□□□□□ -0.29
UPF3A-210ENST00000493727 ANKRD54Q6NXT1 300 aa13.27□□□□□ -0.29
UPF3A-210ENST00000493727 LRRC55Q6ZSA7 311 aa13.27□□□□□ -0.29
UPF3A-210ENST00000493727 TMC7Q7Z402 723 aa13.27□□□□□ -0.29
UPF3A-210ENST00000493727 CASP10Q92851 521 aa13.27□□□□□ -0.29
UPF3A-210ENST00000493727 ZNF668Q96K58 619 aaPredicted RBP13.27□□□□□ -0.29
UPF3A-210ENST00000493727 CEP89Q96ST8 783 aa13.27□□□□□ -0.29
UPF3A-210ENST00000493727 GTPBP4Q9BZE4 634 aaKnown RBP13.27□□□□□ -0.29
UPF3A-210ENST00000493727 MRPL44Q9H9J2 332 aaKnown RBP13.27□□□□□ -0.29
UPF3A-210ENST00000493727 ANO10Q9NW15 660 aa13.27□□□□□ -0.29
UPF3A-210ENST00000493727 LARSQ9P2J5 1176 aaKnown RBP13.27□□□□□ -0.29
UPF3A-210ENST00000493727 SUCLA2Q9P2R7 463 aaPredicted RBP13.27□□□□□ -0.29
UPF3A-210ENST00000493727 SEL1LQ9UBV2 794 aa13.27□□□□□ -0.29
UPF3A-210ENST00000493727 KCNG1Q9UIX4 513 aa13.27□□□□□ -0.29
UPF3A-210ENST00000493727 WDR87Q6ZQQ6 2873 aa13.27□□□□□ -0.29
UPF3A-210ENST00000493727 DENND4AQ7Z401 1863 aa13.27□□□□□ -0.29
UPF3A-210ENST00000493727 A0A087WZ62 844 aa13.26□□□□□ -0.29
UPF3A-210ENST00000493727 CCDC169A6NNP5 214 aa13.26□□□□□ -0.29
UPF3A-210ENST00000493727 K7ENM7 598 aa13.26□□□□□ -0.29
UPF3A-210ENST00000493727 RHOBTB3O94955 611 aa13.26□□□□□ -0.29
UPF3A-210ENST00000493727 GCNT3O95395 438 aa13.26□□□□□ -0.29
UPF3A-210ENST00000493727 RFX1P22670 979 aa13.26□□□□□ -0.29
UPF3A-210ENST00000493727 PHKA2P46019 1235 aa13.26□□□□□ -0.29
UPF3A-210ENST00000493727 SMTNP53814 917 aa13.26□□□□□ -0.29
UPF3A-210ENST00000493727 PEX3P56589 373 aa13.26□□□□□ -0.29
UPF3A-210ENST00000493727 NLRP12P59046 1061 aa13.26□□□□□ -0.29
UPF3A-210ENST00000493727 EP300Q09472 2414 aaPredicted RBP13.26□□□□□ -0.29
UPF3A-210ENST00000493727 MAPK7Q13164 816 aa13.26□□□□□ -0.29
UPF3A-210ENST00000493727 PSMD2Q13200 908 aa13.26□□□□□ -0.29
UPF3A-210ENST00000493727 DRP2Q13474 957 aa13.26□□□□□ -0.29
UPF3A-210ENST00000493727 STIM1Q13586 685 aa13.26□□□□□ -0.29
UPF3A-210ENST00000493727 SMC1AQ14683 1233 aaKnown RBP13.26□□□□□ -0.29
UPF3A-210ENST00000493727 ZNF658Q5TYW1 1059 aaPredicted RBP13.26□□□□□ -0.29
UPF3A-210ENST00000493727 GLB1LQ6UWU2 654 aa13.26□□□□□ -0.29
UPF3A-210ENST00000493727 STXBP4Q6ZWJ1 553 aa13.26□□□□□ -0.29
UPF3A-210ENST00000493727 CATSPER4Q7RTX7 472 aa13.26□□□□□ -0.29
UPF3A-210ENST00000493727 PRICKLE2Q7Z3G6 844 aa13.26□□□□□ -0.29
UPF3A-210ENST00000493727 RHPN2Q8IUC4 686 aa13.26□□□□□ -0.29
UPF3A-210ENST00000493727 SIX5Q8N196 739 aa13.26□□□□□ -0.29
UPF3A-210ENST00000493727 SLC39A11Q8N1S5 342 aa13.26□□□□□ -0.29
UPF3A-210ENST00000493727 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms