RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 MLXIPLQ9NP71 852 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 RHBDL2Q9NX52 303 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 INPP5FQ9Y2H2 1132 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 PRKCBP05771 671 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 PSMC4P43686 418 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 RCN2Q14257 317 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 SV2AQ7L0J3 742 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 VSIG10LQ86VR7 867 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 MFN1Q8IWA4 741 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 MDM1Q8TC05 714 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 AGPAT1Q99943 283 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 SALL4Q9UJQ4 1053 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 NWD2Q9ULI1 1742 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 GOLGA8MH3BSY2 632 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 DAPK3O43293 454 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 MAP3K7O43318 606 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 HLA-DRAP01903 254 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 SERPINB4P48594 390 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 NLRP11P59045 1033 aaKnown RBP11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 TAF1CQ15572 869 aaPredicted RBP11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ACCSLQ4AC99 568 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 BZW1Q7L1Q6 419 aaKnown RBP11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ERO1BQ86YB8 467 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 RAPGEF5Q92565 580 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 LENG1Q96BZ8 264 aaPredicted RBP11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 LBHD1Q9BQE6 289 aaPredicted RBP11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 CENPKQ9BS16 269 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 KCTD10Q9H3F6 313 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 RPF1Q9H9Y2 349 aaKnown RBP11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 DAAM1Q9Y4D1 1078 aa11.39□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 DNAJC8O75937 253 aaPredicted RBP11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 OATP04181 439 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 GNA15P30679 374 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 RGS7P49802 495 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 DEUP1Q05D60 604 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 LRRC14Q15048 493 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ZNF699Q32M78 642 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 BTNL9Q6UXG8 535 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 PDCD7Q8N8D1 485 aaKnown RBP11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 TSEN2Q8NCE0 465 aaKnown RBP11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ZNF564Q8TBZ8 553 aaPredicted RBP11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 CLEC4DQ8WXI8 215 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 MIS12Q9H081 205 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 BTBD7Q9P203 1132 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 NID2Q14112 1375 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 RASGRF2O14827 1237 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 TTI1O43156 1089 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ZNF862O60290 1169 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 CYP3A4P08684 503 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 C6orf222P0C671 652 aaPredicted RBP11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 TPP2P29144 1249 aaPredicted RBP11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ADCYAP1R1P41586 468 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 PTGER2P43116 358 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 RAP1GAPP47736 663 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 FKBP1AP62942 108 aaKnown RBP11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ELF3P78545 371 aaPredicted RBP11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 PPP2R5CQ13362 524 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 TTMPQ5BVD1 217 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 PALB2Q86YC2 1186 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 PORCNQ9H237 461 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 NOC2LQ9Y3T9 749 aaKnown RBP11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ZNF711Q9Y462 761 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 FANCGO15287 622 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 EDIL3O43854 480 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 TLR2O60603 784 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ADRB2P07550 413 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ITGA4P13612 1032 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 KRT15P19012 456 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 UBA1P22314 1058 aaKnown RBP11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 PBX1P40424 430 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 SMTNL2Q2TAL5 461 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 CYP4A22Q5TCH4 519 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 PAPD7Q5XG87 772 aaKnown RBP11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 MOXD1Q6UVY6 613 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 C3orf20Q8ND61 904 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 BSNDQ8WZ55 320 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 TMEM117Q9H0C3 514 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 NGRNQ9NPE2 291 aaKnown RBP11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 PNMA2Q9UL42 364 aa11.38□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ACSL3O95573 720 aa11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 PDGFRBP09619 1106 aa11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 NQO1P15559 274 aaKnown RBP11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 PPATQ06203 517 aa11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 SGO2Q562F6 1265 aa11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 CATSPERGQ6ZRH7 1159 aa11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 OR6B3Q8NGW1 331 aa11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 CEP70Q8NHQ1 597 aa11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 MAK16Q9BXY0 300 aaKnown RBP11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 STK33Q9BYT3 514 aa11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 FAM49BQ9NUQ9 324 aa11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 PAIP2BQ9ULR5 123 aaKnown RBP11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 SHOX2O60902 331 aaPredicted RBP11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 USP2O75604 605 aaPredicted RBP11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 CHN1P15882 459 aa11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 SNAPC2Q13487 334 aa11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 NCOA4Q13772 614 aa11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 PAN2Q504Q3 1202 aaKnown RBP11.37□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ZBTB41Q5SVQ8 909 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms