RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 GNAI3P08754 354 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 FPR1P21462 350 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 DDX6P26196 483 aaKnown RBP eCLIP2.81□□□□□ -1.96
HMGB1-208ENST00000490788 PCSK1P29120 753 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 WASP42768 502 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 USP14P54578 494 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 INHBCP55103 352 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 ADKP55263 362 aaKnown RBP2.81□□□□□ -1.96
HMGB1-208ENST00000490788 CTXN1P60606 82 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 GNAI1P63096 354 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 SLC25A3Q00325 362 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 GUCY1B3Q02153 619 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 MTM1Q13496 603 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 PDCD4Q53EL6 469 aaKnown RBP2.81□□□□□ -1.96
HMGB1-208ENST00000490788 SEM1Q6ZVN7 128 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 MAPKAPK5Q8IW41 473 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 RHOT2Q8IXI1 618 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 Q8N1X5 172 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 CPEB3Q8NE35 698 aaKnown RBP2.81□□□□□ -1.96
HMGB1-208ENST00000490788 SUPT20HQ8NEM7 779 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 OR56A1Q8NGH5 318 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 OR2I1PQ8NGU4 316 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 TBC1D15Q8TC07 691 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 RAB24Q969Q5 203 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 LENG9Q96B70 501 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 COA7Q96BR5 231 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 CHMP4CQ96CF2 233 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 RNF31Q96EP0 1072 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 MYEOVQ96EZ4 313 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 ASPSCR1Q9BZE9 553 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 GSTO2Q9H4Y5 243 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 ZNF768Q9H5H4 540 aaKnown RBP2.81□□□□□ -1.96
HMGB1-208ENST00000490788 TYW1Q9NV66 732 aaKnown RBP2.81□□□□□ -1.96
HMGB1-208ENST00000490788 NIPSNAP3AQ9UFN0 247 aaPredicted RBP2.81□□□□□ -1.96
HMGB1-208ENST00000490788 TESQ9UGI8 421 aaKnown RBP2.81□□□□□ -1.96
HMGB1-208ENST00000490788 TUBD1Q9UJT1 453 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 SIK3Q9Y2K2 1263 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 PCDHGA9Q9Y5G4 932 aaKnown RBP2.81□□□□□ -1.96
HMGB1-208ENST00000490788 PCDHGA8Q9Y5G5 932 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 PCDHGA7Q9Y5G6 932 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 PCDHGA6Q9Y5G7 932 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 PCDHGA3Q9Y5H0 932 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 CFAP20Q9Y6A4 193 aaKnown RBP2.81□□□□□ -1.96
HMGB1-208ENST00000490788 TNKSO95271 1327 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 AFF2P51816 1311 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 WDR33Q9C0J8 1336 aaKnown RBP2.81□□□□□ -1.96
HMGB1-208ENST00000490788 ATRNL1Q5VV63 1379 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 UHRF1BP1LA0JNW5 1464 aa2.81□□□□□ -1.96
HMGB1-208ENST00000490788 ZCCHC11Q5TAX3 1644 aaKnown RBP2.81□□□□□ -1.96
HMGB1-208ENST00000490788 RNF17Q9BXT8 1623 aaKnown RBP2.81□□□□□ -1.96
HMGB1-208ENST00000490788 SETD1BQ9UPS6 1966 aaKnown RBP2.81□□□□□ -1.96
HMGB1-208ENST00000490788 ABCA5Q8WWZ7 1642 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 ZFYVE16Q7Z3T8 1539 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 ARHGEF12Q9NZN5 1544 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 KDM5BQ9UGL1 1544 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 SPATA31A6Q5VVP1 1343 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 A0A1B0GTW7 788 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 CDHR4A6H8M9 788 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 GRXCR1A8MXD5 290 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 AHRRA9YTQ3 701 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 ZNF185O15231 689 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 B3GALT2O43825 422 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 CDKL5O76039 1030 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 RHOBTB3O94955 611 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 ARIH2O95376 493 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 FOSP01100 380 aaPredicted RBP2.8□□□□□ -1.96
HMGB1-208ENST00000490788 AMY1AP04745 511 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 CENPBP07199 599 aaPredicted RBP2.8□□□□□ -1.96
HMGB1-208ENST00000490788 CKBP12277 381 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 ZSCAN20P17040 1043 aaPredicted RBP2.8□□□□□ -1.96
HMGB1-208ENST00000490788 BMPR1AP36894 532 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 AVPR1BP47901 424 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 SLC6A9P48067 706 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 NEK2P51955 445 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 FSTL1Q12841 308 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 KLF10Q13118 480 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 RESTQ13127 1097 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 IL10RAQ13651 578 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 PABPC1LQ4VXU2 614 aaKnown RBP2.8□□□□□ -1.96
HMGB1-208ENST00000490788 FAM102AQ5T9C2 384 aaPredicted RBP2.8□□□□□ -1.96
HMGB1-208ENST00000490788 FNDC7Q5VTL7 733 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 AGAP9Q5VTM2 703 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 LAIR1Q6GTX8 287 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 MRGPRGQ86SM5 289 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 MRGPREQ86SM8 312 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 SYT12Q8IV01 421 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 COLGALT2Q8IYK4 626 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 ZGPATQ8N5A5 531 aaKnown RBP2.8□□□□□ -1.96
HMGB1-208ENST00000490788 NUP133Q8WUM0 1156 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 KAT5Q92993 513 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 CAVIN3Q969G5 261 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 HSPBAP1Q96EW2 488 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 GPATCH3Q96I76 525 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 PNKPQ96T60 521 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 MYOCQ99972 504 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 TTPALQ9BTX7 342 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 PCED1AQ9H1Q7 454 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 KMT5AQ9NQR1 393 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 FBXO34Q9NWN3 711 aa2.8□□□□□ -1.96
HMGB1-208ENST00000490788 GPRC5BQ9NZH0 403 aa2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms