RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 SUSD3Q96L08 255 aa18.8■□□□□ 0.6
MDC1-206ENST00000489540 BACE2Q9Y5Z0 518 aa18.8■□□□□ 0.6
MDC1-206ENST00000489540 DLL1O00548 723 aa18.79■□□□□ 0.6
MDC1-206ENST00000489540 TKTP29401 623 aaKnown RBP18.79■□□□□ 0.6
MDC1-206ENST00000489540 GUCY2FP51841 1108 aa18.79■□□□□ 0.6
MDC1-206ENST00000489540 ITIH3Q06033 890 aa18.79■□□□□ 0.6
MDC1-206ENST00000489540 SURF1Q15526 300 aa18.79■□□□□ 0.6
MDC1-206ENST00000489540 C9orf57Q5W0N0 161 aa18.79■□□□□ 0.6
MDC1-206ENST00000489540 ELOA2Q8IYF1 753 aaPredicted RBP18.79■□□□□ 0.6
MDC1-206ENST00000489540 APPL2Q8NEU8 664 aa18.79■□□□□ 0.6
MDC1-206ENST00000489540 CLSTN3Q9BQT9 956 aa18.79■□□□□ 0.6
MDC1-206ENST00000489540 ADAM7Q9H2U9 754 aa18.79■□□□□ 0.6
MDC1-206ENST00000489540 DPP3Q9NY33 737 aa18.79■□□□□ 0.6
MDC1-206ENST00000489540 PRKAG3Q9UGI9 489 aa18.79■□□□□ 0.6
MDC1-206ENST00000489540 ANO9A1A5B4 782 aa18.78■□□□□ 0.6
MDC1-206ENST00000489540 H7C4K7 107 aa18.78■□□□□ 0.6
MDC1-206ENST00000489540 I3L4J1 428 aa18.78■□□□□ 0.6
MDC1-206ENST00000489540 TULP1O00294 542 aaPredicted RBP18.78■□□□□ 0.6
MDC1-206ENST00000489540 PIRO00625 290 aa18.78■□□□□ 0.6
MDC1-206ENST00000489540 CLIC2O15247 247 aa18.78■□□□□ 0.6
MDC1-206ENST00000489540 RPL17P18621 184 aaKnown RBP18.78■□□□□ 0.6
MDC1-206ENST00000489540 AARSP49588 968 aaKnown RBP eCLIP18.78■□□□□ 0.6
MDC1-206ENST00000489540 CES5AQ6NT32 575 aa18.78■□□□□ 0.6
MDC1-206ENST00000489540 PALB2Q86YC2 1186 aa18.78■□□□□ 0.6
MDC1-206ENST00000489540 XXYLT1Q8NBI6 393 aa18.78■□□□□ 0.6
MDC1-206ENST00000489540 PLEKHA4Q9H4M7 779 aa18.78■□□□□ 0.6
MDC1-206ENST00000489540 RMND1Q9NWS8 449 aa18.78■□□□□ 0.6
MDC1-206ENST00000489540 MTRRQ9UBK8 725 aa18.78■□□□□ 0.6
MDC1-206ENST00000489540 PCDHB8Q9UN66 801 aa18.78■□□□□ 0.6
MDC1-206ENST00000489540 USP15Q9Y4E8 981 aaPredicted RBP18.78■□□□□ 0.6
MDC1-206ENST00000489540 TCHHQ07283 1943 aa18.78■□□□□ 0.6
MDC1-206ENST00000489540 ATG2AQ2TAZ0 1938 aa18.77■□□□□ 0.6
MDC1-206ENST00000489540 SPDYE4A6NLX3 237 aa18.77■□□□□ 0.6
MDC1-206ENST00000489540 M0QZQ0 153 aa18.77■□□□□ 0.6
MDC1-206ENST00000489540 PDXKO00764 312 aa18.77■□□□□ 0.6
MDC1-206ENST00000489540 TGM5O43548 720 aa18.77■□□□□ 0.6
MDC1-206ENST00000489540 SMC2O95347 1197 aa18.77■□□□□ 0.6
MDC1-206ENST00000489540 CYP2J2P51589 502 aa18.77■□□□□ 0.6
MDC1-206ENST00000489540 LILRA4P59901 499 aa18.77■□□□□ 0.6
MDC1-206ENST00000489540 TFAMQ00059 246 aaKnown RBP18.77■□□□□ 0.6
MDC1-206ENST00000489540 VARS2Q5ST30 1063 aaKnown RBP18.77■□□□□ 0.6
MDC1-206ENST00000489540 LILRA6Q6PI73 481 aa18.77■□□□□ 0.6
MDC1-206ENST00000489540 DSTYKQ6XUX3 929 aa18.77■□□□□ 0.6
MDC1-206ENST00000489540 CBWD2Q8IUF1 395 aa18.77■□□□□ 0.6
MDC1-206ENST00000489540 EFCAB13Q8IY85 973 aa18.77■□□□□ 0.6
MDC1-206ENST00000489540 TMEM174Q8WUU8 243 aa18.77■□□□□ 0.6
MDC1-206ENST00000489540 SUSD6Q92537 303 aa18.77■□□□□ 0.6
MDC1-206ENST00000489540 GSDMAQ96QA5 445 aa18.77■□□□□ 0.6
MDC1-206ENST00000489540 SFXN1Q9H9B4 322 aa18.77■□□□□ 0.6
MDC1-206ENST00000489540 PDE11AQ9HCR9 933 aa18.77■□□□□ 0.6
MDC1-206ENST00000489540 UNC80Q8N2C7 3258 aa18.77■□□□□ 0.6
MDC1-206ENST00000489540 ARHGEF37A1IGU5 675 aa18.76■□□□□ 0.59
MDC1-206ENST00000489540 KINO60870 393 aaKnown RBP18.76■□□□□ 0.59
MDC1-206ENST00000489540 PNOCQ13519 176 aa18.76■□□□□ 0.59
MDC1-206ENST00000489540 RAB33AQ14088 237 aa18.76■□□□□ 0.59
MDC1-206ENST00000489540 MRPL58Q14197 206 aaKnown RBP18.76■□□□□ 0.59
MDC1-206ENST00000489540 SNRNP35Q16560 246 aaKnown RBP18.76■□□□□ 0.59
MDC1-206ENST00000489540 GLYCTKQ8IVS8 523 aa18.76■□□□□ 0.59
MDC1-206ENST00000489540 GTPBP4Q9BZE4 634 aaKnown RBP18.76■□□□□ 0.59
MDC1-206ENST00000489540 KCTD10Q9H3F6 313 aa18.76■□□□□ 0.59
MDC1-206ENST00000489540 MAN1C1Q9NR34 630 aa18.76■□□□□ 0.59
MDC1-206ENST00000489540 GADD45BO75293 160 aaPredicted RBP18.75■□□□□ 0.59
MDC1-206ENST00000489540 OR1D2P34982 312 aa18.75■□□□□ 0.59
MDC1-206ENST00000489540 WNT7BP56706 349 aa18.75■□□□□ 0.59
MDC1-206ENST00000489540 MYBPC2Q14324 1141 aa18.75■□□□□ 0.59
MDC1-206ENST00000489540 ATAT1Q5SQI0 421 aa18.75■□□□□ 0.59
MDC1-206ENST00000489540 RARS2Q5T160 578 aaKnown RBP18.75■□□□□ 0.59
MDC1-206ENST00000489540 SLC9A9Q8IVB4 645 aa18.75■□□□□ 0.59
MDC1-206ENST00000489540 ADHFE1Q8IWW8 467 aa18.75■□□□□ 0.59
MDC1-206ENST00000489540 TMEM130Q8N3G9 435 aa18.75■□□□□ 0.59
MDC1-206ENST00000489540 GUF1Q8N442 669 aaKnown RBP18.75■□□□□ 0.59
MDC1-206ENST00000489540 C12orf76Q8N812 135 aaPredicted RBP18.75■□□□□ 0.59
MDC1-206ENST00000489540 RDH13Q8NBN7 331 aa18.75■□□□□ 0.59
MDC1-206ENST00000489540 RIPOR3Q96MK2 946 aa18.75■□□□□ 0.59
MDC1-206ENST00000489540 NECTIN4Q96NY8 510 aa18.75■□□□□ 0.59
MDC1-206ENST00000489540 POP1Q99575 1024 aaKnown RBP18.75■□□□□ 0.59
MDC1-206ENST00000489540 APOL5Q9BWW9 433 aa18.75■□□□□ 0.59
MDC1-206ENST00000489540 OXCT2Q9BYC2 517 aaPredicted RBP18.75■□□□□ 0.59
MDC1-206ENST00000489540 XIRP2A4UGR9 3374 aa18.75■□□□□ 0.59
MDC1-206ENST00000489540 PPEF2O14830 753 aa18.74■□□□□ 0.59
MDC1-206ENST00000489540 CALUO43852 315 aaPredicted RBP18.74■□□□□ 0.59
MDC1-206ENST00000489540 EXOC3O60645 756 aa18.74■□□□□ 0.59
MDC1-206ENST00000489540 PRPF40AO75400 957 aaKnown RBP18.74■□□□□ 0.59
MDC1-206ENST00000489540 PNPLA4P41247 253 aa18.74■□□□□ 0.59
MDC1-206ENST00000489540 MTHFRP42898 656 aa18.74■□□□□ 0.59
MDC1-206ENST00000489540 TAF6P49848 677 aa18.74■□□□□ 0.59
MDC1-206ENST00000489540 UBE2HP62256 183 aa18.74■□□□□ 0.59
MDC1-206ENST00000489540 CBX2Q14781 532 aaPredicted RBP18.74■□□□□ 0.59
MDC1-206ENST00000489540 DUOXA2Q1HG44 320 aa18.74■□□□□ 0.59
MDC1-206ENST00000489540 SLC8B1Q6J4K2 584 aa18.74■□□□□ 0.59
MDC1-206ENST00000489540 CYP26C1Q6V0L0 522 aa18.74■□□□□ 0.59
MDC1-206ENST00000489540 KREMEN2Q8NCW0 462 aa18.74■□□□□ 0.59
MDC1-206ENST00000489540 CMASQ8NFW8 434 aaPredicted RBP18.74■□□□□ 0.59
MDC1-206ENST00000489540 SPATA20Q8TB22 786 aa18.74■□□□□ 0.59
MDC1-206ENST00000489540 SMARCE1Q969G3 411 aa18.74■□□□□ 0.59
MDC1-206ENST00000489540 ANKRD36BP1Q96IX9 119 aa18.74■□□□□ 0.59
MDC1-206ENST00000489540 NECAB3Q96P71 396 aaPredicted RBP18.74■□□□□ 0.59
MDC1-206ENST00000489540 PHF7Q9BWX1 381 aaPredicted RBP18.74■□□□□ 0.59
MDC1-206ENST00000489540 DMAC2Q9NW81 257 aa18.74■□□□□ 0.59
MDC1-206ENST00000489540 ITGA11Q9UKX5 1188 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms