RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 PCDHB8Q9UN66 801 aa25.02■■□□□ 1.6
COL9A3-213ENST00000489045 GTF3C5Q9Y5Q8 519 aaPredicted RBP25.02■■□□□ 1.6
COL9A3-213ENST00000489045 TSC2P49815 1807 aa25.01■■□□□ 1.59
COL9A3-213ENST00000489045 A0A087X0B3 334 aa25.01■■□□□ 1.59
COL9A3-213ENST00000489045 XPOTO43592 962 aaKnown RBP25.01■■□□□ 1.59
COL9A3-213ENST00000489045 ABLIM3O94929 683 aa25.01■■□□□ 1.59
COL9A3-213ENST00000489045 ADRB2P07550 413 aa25.01■■□□□ 1.59
COL9A3-213ENST00000489045 STAT6P42226 847 aa25.01■■□□□ 1.59
COL9A3-213ENST00000489045 PTPN5P54829 565 aa25.01■■□□□ 1.59
COL9A3-213ENST00000489045 STK38Q15208 465 aa25.01■■□□□ 1.59
COL9A3-213ENST00000489045 ZNF280DQ6N043 979 aa25.01■■□□□ 1.59
COL9A3-213ENST00000489045 ZNF720Q7Z2F6 126 aa25.01■■□□□ 1.59
COL9A3-213ENST00000489045 SLC44A3Q8N4M1 653 aa25.01■■□□□ 1.59
COL9A3-213ENST00000489045 APPL2Q8NEU8 664 aa25.01■■□□□ 1.59
COL9A3-213ENST00000489045 NXPE3Q969Y0 559 aa25.01■■□□□ 1.59
COL9A3-213ENST00000489045 DNAJC19Q96DA6 116 aa25.01■■□□□ 1.59
COL9A3-213ENST00000489045 FAM212AQ96EL1 285 aa25.01■■□□□ 1.59
COL9A3-213ENST00000489045 PANK2Q9BZ23 570 aa25.01■■□□□ 1.59
COL9A3-213ENST00000489045 IKZF4Q9H2S9 585 aa25.01■■□□□ 1.59
COL9A3-213ENST00000489045 DNMT3BQ9UBC3 853 aaKnown RBP25.01■■□□□ 1.59
COL9A3-213ENST00000489045 FBXL21Q9UKT6 434 aa25.01■■□□□ 1.59
COL9A3-213ENST00000489045 ZFP37Q9Y6Q3 630 aaPredicted RBP25.01■■□□□ 1.59
COL9A3-213ENST00000489045 ANHXE9PGG2 379 aa25■■□□□ 1.59
COL9A3-213ENST00000489045 TCF15Q12870 199 aa25■■□□□ 1.59
COL9A3-213ENST00000489045 HTR4Q13639 388 aa25■■□□□ 1.59
COL9A3-213ENST00000489045 ADALQ6DHV7 355 aa25■■□□□ 1.59
COL9A3-213ENST00000489045 JADE1Q6IE81 842 aa25■■□□□ 1.59
COL9A3-213ENST00000489045 ST13P5Q8NFI4 369 aaPredicted RBP25■■□□□ 1.59
COL9A3-213ENST00000489045 ITFG1Q8TB96 612 aa25■■□□□ 1.59
COL9A3-213ENST00000489045 HVCN1Q96D96 273 aa25■■□□□ 1.59
COL9A3-213ENST00000489045 TSPAN18Q96SJ8 248 aa25■■□□□ 1.59
COL9A3-213ENST00000489045 SEL1LQ9UBV2 794 aa25■■□□□ 1.59
COL9A3-213ENST00000489045 CDH7Q9ULB5 785 aa25■■□□□ 1.59
COL9A3-213ENST00000489045 M0QZQ0 153 aa24.99■■□□□ 1.59
COL9A3-213ENST00000489045 PPP1R37O75864 691 aa24.99■■□□□ 1.59
COL9A3-213ENST00000489045 CFHP08603 1231 aa24.99■■□□□ 1.59
COL9A3-213ENST00000489045 ATF2P15336 505 aa24.99■■□□□ 1.59
COL9A3-213ENST00000489045 GAP43P17677 238 aa24.99■■□□□ 1.59
COL9A3-213ENST00000489045 ELF1P32519 619 aa24.99■■□□□ 1.59
COL9A3-213ENST00000489045 ACOT2P49753 483 aa24.99■■□□□ 1.59
COL9A3-213ENST00000489045 TCHHQ07283 1943 aa24.99■■□□□ 1.59
COL9A3-213ENST00000489045 PABPC1LQ4VXU2 614 aaKnown RBP24.99■■□□□ 1.59
COL9A3-213ENST00000489045 HSCBQ8IWL3 235 aa24.99■■□□□ 1.59
COL9A3-213ENST00000489045 CD302Q8IX05 232 aa24.99■■□□□ 1.59
COL9A3-213ENST00000489045 TMEM105Q8N8V8 129 aa24.99■■□□□ 1.59
COL9A3-213ENST00000489045 LINC00301Q8NCQ3 95 aa24.99■■□□□ 1.59
COL9A3-213ENST00000489045 FLCNQ8NFG4 579 aa24.99■■□□□ 1.59
COL9A3-213ENST00000489045 MRPL44Q9H9J2 332 aaKnown RBP24.99■■□□□ 1.59
COL9A3-213ENST00000489045 TBC1D7Q9P0N9 293 aa24.99■■□□□ 1.59
COL9A3-213ENST00000489045 STYXL1Q9Y6J8 313 aa24.99■■□□□ 1.59
COL9A3-213ENST00000489045 NUMBLQ9Y6R0 609 aa24.99■■□□□ 1.59
COL9A3-213ENST00000489045 ARHGEF37A1IGU5 675 aa24.98■■□□□ 1.59
COL9A3-213ENST00000489045 PRRG1O14668 218 aa24.98■■□□□ 1.59
COL9A3-213ENST00000489045 PPEF2O14830 753 aa24.98■■□□□ 1.59
COL9A3-213ENST00000489045 LRG1P02750 347 aa24.98■■□□□ 1.59
COL9A3-213ENST00000489045 NFICP08651 508 aa24.98■■□□□ 1.59
COL9A3-213ENST00000489045 AARSP49588 968 aaKnown RBP eCLIP24.98■■□□□ 1.59
COL9A3-213ENST00000489045 SPATA1Q5VX52 437 aa24.98■■□□□ 1.59
COL9A3-213ENST00000489045 TPGS2Q68CL5 300 aa24.98■■□□□ 1.59
COL9A3-213ENST00000489045 CWF19L1Q69YN2 538 aaKnown RBP24.98■■□□□ 1.59
COL9A3-213ENST00000489045 ASTLQ6HA08 431 aaPredicted RBP24.98■■□□□ 1.59
COL9A3-213ENST00000489045 SLFN12LQ6IEE8 588 aa24.98■■□□□ 1.59
COL9A3-213ENST00000489045 SIX5Q8N196 739 aa24.98■■□□□ 1.59
COL9A3-213ENST00000489045 PDILTQ8N807 584 aa24.98■■□□□ 1.59
COL9A3-213ENST00000489045 BEST2Q8NFU1 509 aa24.98■■□□□ 1.59
COL9A3-213ENST00000489045 FGF13Q92913 245 aa24.98■■□□□ 1.59
COL9A3-213ENST00000489045 STRA6Q9BX79 667 aa24.98■■□□□ 1.59
COL9A3-213ENST00000489045 CYP4F11Q9HBI6 524 aa24.98■■□□□ 1.59
COL9A3-213ENST00000489045 AGO2Q9UKV8 859 aaKnown RBP24.98■■□□□ 1.59
COL9A3-213ENST00000489045 TIMM13Q9Y5L4 95 aaPredicted RBP24.98■■□□□ 1.59
COL9A3-213ENST00000489045 SCN1AP35498 2009 aa24.98■■□□□ 1.59
COL9A3-213ENST00000489045 SPTLC2O15270 562 aa24.97■■□□□ 1.59
COL9A3-213ENST00000489045 SEC24AO95486 1093 aa24.97■■□□□ 1.59
COL9A3-213ENST00000489045 SRFP11831 508 aa24.97■■□□□ 1.59
COL9A3-213ENST00000489045 IDEP14735 1019 aa24.97■■□□□ 1.59
COL9A3-213ENST00000489045 TMEM132DQ14C87 1099 aa24.97■■□□□ 1.59
COL9A3-213ENST00000489045 FOXD4L5Q5VV16 416 aaPredicted RBP24.97■■□□□ 1.59
COL9A3-213ENST00000489045 ALYREFQ86V81 257 aaKnown RBP24.97■■□□□ 1.59
COL9A3-213ENST00000489045 TCEAL8Q8IYN2 117 aa24.97■■□□□ 1.59
COL9A3-213ENST00000489045 FOXD4L4Q8WXT5 416 aaPredicted RBP24.97■■□□□ 1.59
COL9A3-213ENST00000489045 FGF14Q92915 247 aa24.97■■□□□ 1.59
COL9A3-213ENST00000489045 ZNF396Q96N95 335 aaPredicted RBP24.97■■□□□ 1.59
COL9A3-213ENST00000489045 TFIP11Q9UBB9 837 aaKnown RBP24.97■■□□□ 1.59
COL9A3-213ENST00000489045 INSL5Q9Y5Q6 135 aa24.97■■□□□ 1.59
COL9A3-213ENST00000489045 CACNA1HO95180 2353 aa24.97■■□□□ 1.59
COL9A3-213ENST00000489045 GCNT3O95395 438 aa24.96■■□□□ 1.59
COL9A3-213ENST00000489045 CPB1P15086 417 aa24.96■■□□□ 1.59
COL9A3-213ENST00000489045 NPR3P17342 541 aa24.96■■□□□ 1.59
COL9A3-213ENST00000489045 YWHAHQ04917 246 aaPredicted RBP24.96■■□□□ 1.59
COL9A3-213ENST00000489045 KCNA1Q09470 495 aa24.96■■□□□ 1.59
COL9A3-213ENST00000489045 L1TD1Q5T7N2 865 aaKnown RBP24.96■■□□□ 1.59
COL9A3-213ENST00000489045 PARM1Q6UWI2 310 aa24.96■■□□□ 1.59
COL9A3-213ENST00000489045 DSTYKQ6XUX3 929 aa24.96■■□□□ 1.59
COL9A3-213ENST00000489045 ING5Q8WYH8 240 aa24.96■■□□□ 1.59
COL9A3-213ENST00000489045 POMGNT1Q8WZA1 660 aa24.96■■□□□ 1.59
COL9A3-213ENST00000489045 OLFML3Q9NRN5 406 aa24.96■■□□□ 1.59
COL9A3-213ENST00000489045 WNT16Q9UBV4 365 aa24.96■■□□□ 1.59
COL9A3-213ENST00000489045 AFF4Q9UHB7 1163 aaKnown RBP24.96■■□□□ 1.59
COL9A3-213ENST00000489045 KCNH3Q9ULD8 1083 aa24.96■■□□□ 1.59
COL9A3-213ENST00000489045 DERAQ9Y315 318 aa24.96■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms