RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 TPM2P07951 284 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 NFICP08651 508 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 CYP3A5P20815 502 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 CDK11BP21127 795 aaKnown RBP11.13□□□□□ -0.63
SKA1-204ENST00000488454 RPL9P32969 192 aaKnown RBP11.13□□□□□ -0.63
SKA1-204ENST00000488454 MTIF2P46199 727 aaKnown RBP11.13□□□□□ -0.63
SKA1-204ENST00000488454 ENPEPQ07075 957 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 BFSP1Q12934 665 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 PUS10Q3MIT2 529 aaKnown RBP11.13□□□□□ -0.63
SKA1-204ENST00000488454 TCERG1LQ5VWI1 586 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 PPP2R2DQ66LE6 453 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 LRRC55Q6ZSA7 311 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 ZNF280BQ86YH2 543 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 WDR49Q8IV35 697 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 ANKRD20A12PQ8NF67 263 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 PARD3BQ8TEW8 1205 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 TIFAQ96CG3 184 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 UROC1Q96N76 676 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 ZNF558Q96NG5 402 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 SAMD11Q96NU1 681 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 PPP1R10Q96QC0 940 aaKnown RBP11.13□□□□□ -0.63
SKA1-204ENST00000488454 POP1Q99575 1024 aaKnown RBP11.13□□□□□ -0.63
SKA1-204ENST00000488454 CGRRF1Q99675 332 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 TMEM175Q9BSA9 504 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 CXCL16Q9H2A7 254 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 NKX2-4Q9H2Z4 354 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 NRDE2Q9H7Z3 1164 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 SLC24A3Q9HC58 644 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 NFE2L3Q9Y4A8 694 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 TNRC18O15417 2968 aaPredicted RBP11.13□□□□□ -0.63
SKA1-204ENST00000488454 LCHNA4D1U4 455 aa11.12□□□□□ -0.63
SKA1-204ENST00000488454 LINC01553A4QN01 128 aa11.12□□□□□ -0.63
SKA1-204ENST00000488454 GOLGA6L19H0YKK7 550 aa11.12□□□□□ -0.63
SKA1-204ENST00000488454 MEFVO15553 781 aaPredicted RBP11.12□□□□□ -0.63
SKA1-204ENST00000488454 TADA2AO75478 443 aa11.12□□□□□ -0.63
SKA1-204ENST00000488454 GALTP07902 379 aa11.12□□□□□ -0.63
SKA1-204ENST00000488454 GTF2H1P32780 548 aa11.12□□□□□ -0.63
SKA1-204ENST00000488454 BCAR1P56945 870 aa11.12□□□□□ -0.63
SKA1-204ENST00000488454 ZNF445P59923 1031 aa11.12□□□□□ -0.63
SKA1-204ENST00000488454 KRT17Q04695 432 aa11.12□□□□□ -0.63
SKA1-204ENST00000488454 BIRC3Q13489 604 aa11.12□□□□□ -0.63
SKA1-204ENST00000488454 TRPC3Q13507 836 aa11.12□□□□□ -0.63
SKA1-204ENST00000488454 ZBTB6Q15916 424 aa11.12□□□□□ -0.63
SKA1-204ENST00000488454 DCAF17Q5H9S7 520 aaPredicted RBP11.12□□□□□ -0.63
SKA1-204ENST00000488454 DCLRE1AQ6PJP8 1040 aa11.12□□□□□ -0.63
SKA1-204ENST00000488454 KCNT2Q6UVM3 1135 aa11.12□□□□□ -0.63
SKA1-204ENST00000488454 COLGALT2Q8IYK4 626 aa11.12□□□□□ -0.63
SKA1-204ENST00000488454 AOPEPQ8N6M6 819 aa11.12□□□□□ -0.63
SKA1-204ENST00000488454 C18orf25Q96B23 403 aaPredicted RBP11.12□□□□□ -0.63
SKA1-204ENST00000488454 MED15Q96RN5 788 aa11.12□□□□□ -0.63
SKA1-204ENST00000488454 TGS1Q96RS0 853 aaKnown RBP11.12□□□□□ -0.63
SKA1-204ENST00000488454 CWH43Q9H720 699 aa11.12□□□□□ -0.63
SKA1-204ENST00000488454 RC3H2Q9HBD1 1191 aaKnown RBP11.12□□□□□ -0.63
SKA1-204ENST00000488454 INTS13Q9NVM9 706 aa11.12□□□□□ -0.63
SKA1-204ENST00000488454 FANCLQ9NW38 375 aa11.12□□□□□ -0.63
SKA1-204ENST00000488454 DPP3Q9NY33 737 aa11.12□□□□□ -0.63
SKA1-204ENST00000488454 PLAGL2Q9UPG8 496 aa11.12□□□□□ -0.63
SKA1-204ENST00000488454 YBX2Q9Y2T7 364 aaKnown RBP11.12□□□□□ -0.63
SKA1-204ENST00000488454 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.12□□□□□ -0.63
SKA1-204ENST00000488454 MICAL3Q7RTP6 2002 aa11.12□□□□□ -0.63
SKA1-204ENST00000488454 LRRIQ3A6PVS8 624 aaPredicted RBP11.11□□□□□ -0.63
SKA1-204ENST00000488454 NRP1O14786 923 aa11.11□□□□□ -0.63
SKA1-204ENST00000488454 B3GAT3O94766 335 aa11.11□□□□□ -0.63
SKA1-204ENST00000488454 RB1P06400 928 aa11.11□□□□□ -0.63
SKA1-204ENST00000488454 KRT19P08727 400 aa11.11□□□□□ -0.63
SKA1-204ENST00000488454 LRPAP1P30533 357 aa11.11□□□□□ -0.63
SKA1-204ENST00000488454 CTNNB1P35222 781 aa11.11□□□□□ -0.63
SKA1-204ENST00000488454 PPM1AP35813 382 aa11.11□□□□□ -0.63
SKA1-204ENST00000488454 BMPR1AP36894 532 aa11.11□□□□□ -0.63
SKA1-204ENST00000488454 WNT7BP56706 349 aa11.11□□□□□ -0.63
SKA1-204ENST00000488454 RBP5P82980 135 aa11.11□□□□□ -0.63
SKA1-204ENST00000488454 TAP1Q03518 808 aa11.11□□□□□ -0.63
SKA1-204ENST00000488454 DSC1Q08554 894 aa11.11□□□□□ -0.63
SKA1-204ENST00000488454 CETN1Q12798 172 aa11.11□□□□□ -0.63
SKA1-204ENST00000488454 LMBRD2Q68DH5 695 aaPredicted RBP11.11□□□□□ -0.63
SKA1-204ENST00000488454 EFCAB13Q8IY85 973 aa11.11□□□□□ -0.63
SKA1-204ENST00000488454 COLGALT1Q8NBJ5 622 aa11.11□□□□□ -0.63
SKA1-204ENST00000488454 CLP1Q92989 425 aaKnown RBP11.11□□□□□ -0.63
SKA1-204ENST00000488454 BORCS6Q96GS4 357 aa11.11□□□□□ -0.63
SKA1-204ENST00000488454 CNOT6LQ96LI5 555 aaKnown RBP11.11□□□□□ -0.63
SKA1-204ENST00000488454 PLVAPQ9BX97 442 aa11.11□□□□□ -0.63
SKA1-204ENST00000488454 MTMR12Q9C0I1 747 aa11.11□□□□□ -0.63
SKA1-204ENST00000488454 MMRN2Q9H8L6 949 aa11.11□□□□□ -0.63
SKA1-204ENST00000488454 CBX8Q9HC52 389 aa11.11□□□□□ -0.63
SKA1-204ENST00000488454 SAMSN1Q9NSI8 373 aaKnown RBP11.11□□□□□ -0.63
SKA1-204ENST00000488454 SPG21Q9NZD8 308 aa11.11□□□□□ -0.63
SKA1-204ENST00000488454 DNAJB4Q9UDY4 337 aa11.11□□□□□ -0.63
SKA1-204ENST00000488454 TUBGCP4Q9UGJ1 667 aa11.11□□□□□ -0.63
SKA1-204ENST00000488454 PUF60Q9UHX1 559 aaKnown RBP11.11□□□□□ -0.63
SKA1-204ENST00000488454 ITGA11Q9UKX5 1188 aa11.11□□□□□ -0.63
SKA1-204ENST00000488454 PRG3Q9Y2Y8 225 aaPredicted RBP11.11□□□□□ -0.63
SKA1-204ENST00000488454 NUB1Q9Y5A7 615 aa11.11□□□□□ -0.63
SKA1-204ENST00000488454 KCNJ18B7U540 433 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 NT5C1B-RDH14C9J2C7 533 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 PES1O00541 588 aaKnown RBP11.1□□□□□ -0.63
SKA1-204ENST00000488454 PODXLO00592 558 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 TRAPPC3O43617 180 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 N4BP1O75113 896 aaKnown RBP11.1□□□□□ -0.63
SKA1-204ENST00000488454 CLSTN1O94985 981 aa11.1□□□□□ -0.63
SKA1-204ENST00000488454 TRIM49P0CI25 452 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms