RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 ZDHHC8Q9ULC8 765 aa6.78□□□□□ -1.32
USP48-209ENST00000487880 L1RE1Q9UN81 338 aa6.78□□□□□ -1.32
USP48-209ENST00000487880 FRMPD2Q68DX3 1309 aaPredicted RBP6.77□□□□□ -1.32
USP48-209ENST00000487880 ZBED1O96006 694 aa6.77□□□□□ -1.33
USP48-209ENST00000487880 ANXA1P04083 346 aa6.77□□□□□ -1.33
USP48-209ENST00000487880 GNALP38405 381 aa6.77□□□□□ -1.33
USP48-209ENST00000487880 RNASE9P60153 205 aaKnown RBP6.77□□□□□ -1.33
USP48-209ENST00000487880 USP39Q53GS9 565 aaKnown RBP6.77□□□□□ -1.33
USP48-209ENST00000487880 PDSS2Q86YH6 399 aa6.77□□□□□ -1.33
USP48-209ENST00000487880 SH2D3CQ8N5H7 860 aa6.77□□□□□ -1.33
USP48-209ENST00000487880 TIFAQ96CG3 184 aa6.77□□□□□ -1.33
USP48-209ENST00000487880 KLHL11Q9NVR0 708 aa6.77□□□□□ -1.33
USP48-209ENST00000487880 EIF2B4Q9UI10 523 aaKnown RBP6.77□□□□□ -1.33
USP48-209ENST00000487880 SLC45A2Q9UMX9 530 aa6.77□□□□□ -1.33
USP48-209ENST00000487880 SORCS3Q9UPU3 1222 aa6.77□□□□□ -1.33
USP48-209ENST00000487880 B8ZZF3 427 aa6.76□□□□□ -1.33
USP48-209ENST00000487880 PRRG2O14669 202 aa6.76□□□□□ -1.33
USP48-209ENST00000487880 TPP1O14773 563 aa6.76□□□□□ -1.33
USP48-209ENST00000487880 ZNF185O15231 689 aa6.76□□□□□ -1.33
USP48-209ENST00000487880 GJB1P08034 283 aa6.76□□□□□ -1.33
USP48-209ENST00000487880 RHCEP18577 417 aa6.76□□□□□ -1.33
USP48-209ENST00000487880 TBX4P57082 545 aa6.76□□□□□ -1.33
USP48-209ENST00000487880 GPSM2P81274 684 aa6.76□□□□□ -1.33
USP48-209ENST00000487880 SLC25A3Q00325 362 aa6.76□□□□□ -1.33
USP48-209ENST00000487880 RHDQ02161 417 aa6.76□□□□□ -1.33
USP48-209ENST00000487880 FGL2Q14314 439 aa6.76□□□□□ -1.33
USP48-209ENST00000487880 HLTFQ14527 1009 aaKnown RBP eCLIP6.76□□□□□ -1.33
USP48-209ENST00000487880 KIF22Q14807 665 aa6.76□□□□□ -1.33
USP48-209ENST00000487880 UTP14CQ5TAP6 766 aaKnown RBP6.76□□□□□ -1.33
USP48-209ENST00000487880 LRRC55Q6ZSA7 311 aa6.76□□□□□ -1.33
USP48-209ENST00000487880 GDF7Q7Z4P5 450 aa6.76□□□□□ -1.33
USP48-209ENST00000487880 COL23A1Q86Y22 540 aaPredicted RBP6.76□□□□□ -1.33
USP48-209ENST00000487880 C1orf210Q8IVY1 113 aa6.76□□□□□ -1.33
USP48-209ENST00000487880 OR56A1Q8NGH5 318 aa6.76□□□□□ -1.33
USP48-209ENST00000487880 NUP133Q8WUM0 1156 aa6.76□□□□□ -1.33
USP48-209ENST00000487880 CACTINQ8WUQ7 758 aaKnown RBP6.76□□□□□ -1.33
USP48-209ENST00000487880 NT5C1BQ96P26 610 aa6.76□□□□□ -1.33
USP48-209ENST00000487880 SLC46A2Q9BY10 475 aa6.76□□□□□ -1.33
USP48-209ENST00000487880 ARMT1Q9H993 441 aa6.76□□□□□ -1.33
USP48-209ENST00000487880 ATP6V0A4Q9HBG4 840 aa6.76□□□□□ -1.33
USP48-209ENST00000487880 GPR35Q9HC97 309 aa6.76□□□□□ -1.33
USP48-209ENST00000487880 DDX21Q9NR30 783 aaKnown RBP eCLIP6.76□□□□□ -1.33
USP48-209ENST00000487880 CFAP97Q9P2B7 532 aa6.76□□□□□ -1.33
USP48-209ENST00000487880 PCDHA1Q9Y5I3 950 aa6.76□□□□□ -1.33
USP48-209ENST00000487880 CAPN8A6NHC0 703 aa6.75□□□□□ -1.33
USP48-209ENST00000487880 MARCH11A6NNE9 402 aa6.75□□□□□ -1.33
USP48-209ENST00000487880 RECQL4O94761 1208 aa6.75□□□□□ -1.33
USP48-209ENST00000487880 AGFG2O95081 481 aa6.75□□□□□ -1.33
USP48-209ENST00000487880 SCAF4O95104 1147 aaKnown RBP6.75□□□□□ -1.33
USP48-209ENST00000487880 AHSGP02765 367 aa6.75□□□□□ -1.33
USP48-209ENST00000487880 ADRB1P08588 477 aa6.75□□□□□ -1.33
USP48-209ENST00000487880 GNAI3P08754 354 aa6.75□□□□□ -1.33
USP48-209ENST00000487880 CKBP12277 381 aa6.75□□□□□ -1.33
USP48-209ENST00000487880 GNAI1P63096 354 aa6.75□□□□□ -1.33
USP48-209ENST00000487880 NOMO3P69849 1222 aa6.75□□□□□ -1.33
USP48-209ENST00000487880 LLGL1Q15334 1064 aa6.75□□□□□ -1.33
USP48-209ENST00000487880 PDCD4Q53EL6 469 aaKnown RBP6.75□□□□□ -1.33
USP48-209ENST00000487880 NOMO2Q5JPE7 1267 aa6.75□□□□□ -1.33
USP48-209ENST00000487880 MAEAQ7L5Y9 396 aa6.75□□□□□ -1.33
USP48-209ENST00000487880 TMIEQ8NEW7 156 aa6.75□□□□□ -1.33
USP48-209ENST00000487880 TBC1D15Q8TC07 691 aa6.75□□□□□ -1.33
USP48-209ENST00000487880 CPT1CQ8TCG5 803 aa6.75□□□□□ -1.33
USP48-209ENST00000487880 BRIX1Q8TDN6 353 aaKnown RBP6.75□□□□□ -1.33
USP48-209ENST00000487880 PHACTR3Q96KR7 559 aa6.75□□□□□ -1.33
USP48-209ENST00000487880 MRGPRX1Q96LB2 322 aa6.75□□□□□ -1.33
USP48-209ENST00000487880 KLHL32Q96NJ5 620 aa6.75□□□□□ -1.33
USP48-209ENST00000487880 TEX101Q9BY14 249 aa6.75□□□□□ -1.33
USP48-209ENST00000487880 BRD9Q9H8M2 597 aa6.75□□□□□ -1.33
USP48-209ENST00000487880 PARPBPQ9NWS1 579 aa6.75□□□□□ -1.33
USP48-209ENST00000487880 USP15Q9Y4E8 981 aaPredicted RBP6.75□□□□□ -1.33
USP48-209ENST00000487880 CCDC78A2IDD5 438 aa6.74□□□□□ -1.33
USP48-209ENST00000487880 PRC1O43663 620 aa6.74□□□□□ -1.33
USP48-209ENST00000487880 RARBP10826 455 aa6.74□□□□□ -1.33
USP48-209ENST00000487880 FCER1AP12319 257 aa6.74□□□□□ -1.33
USP48-209ENST00000487880 ZFP36P26651 326 aaKnown RBP6.74□□□□□ -1.33
USP48-209ENST00000487880 FAM189BP81408 668 aa6.74□□□□□ -1.33
USP48-209ENST00000487880 LCE5AQ5TCM9 118 aa6.74□□□□□ -1.33
USP48-209ENST00000487880 CELF5Q8N6W0 485 aaKnown RBP6.74□□□□□ -1.33
USP48-209ENST00000487880 FAM156AQ8NDB6 213 aa6.74□□□□□ -1.33
USP48-209ENST00000487880 TNPO1Q92973 898 aaKnown RBP6.74□□□□□ -1.33
USP48-209ENST00000487880 SCAMP4Q969E2 229 aa6.74□□□□□ -1.33
USP48-209ENST00000487880 CCDC136Q96JN2 1154 aa6.74□□□□□ -1.33
USP48-209ENST00000487880 REXO4Q9GZR2 422 aaKnown RBP6.74□□□□□ -1.33
USP48-209ENST00000487880 ZMAT3Q9HA38 289 aaKnown RBP6.74□□□□□ -1.33
USP48-209ENST00000487880 TRPM5Q9NZQ8 1165 aa6.74□□□□□ -1.33
USP48-209ENST00000487880 STAP2Q9UGK3 403 aa6.74□□□□□ -1.33
USP48-209ENST00000487880 A0A1B0GTW7 788 aa6.73□□□□□ -1.33
USP48-209ENST00000487880 GAGE12BA1L429 117 aa6.73□□□□□ -1.33
USP48-209ENST00000487880 GAGE12HA6NDE8 117 aa6.73□□□□□ -1.33
USP48-209ENST00000487880 FRS3O43559 492 aa6.73□□□□□ -1.33
USP48-209ENST00000487880 FAM20BO75063 409 aa6.73□□□□□ -1.33
USP48-209ENST00000487880 RPS6KA4O75676 772 aa6.73□□□□□ -1.33
USP48-209ENST00000487880 C1SP09871 688 aa6.73□□□□□ -1.33
USP48-209ENST00000487880 NR4A1P22736 598 aa6.73□□□□□ -1.33
USP48-209ENST00000487880 OCA2Q04671 838 aa6.73□□□□□ -1.33
USP48-209ENST00000487880 TCF15Q12870 199 aa6.73□□□□□ -1.33
USP48-209ENST00000487880 CNN3Q15417 329 aaKnown RBP6.73□□□□□ -1.33
USP48-209ENST00000487880 NRN1LQ496H8 165 aa6.73□□□□□ -1.33
USP48-209ENST00000487880 TSHZ3Q63HK5 1081 aa6.73□□□□□ -1.33
USP48-209ENST00000487880 APOA5Q6Q788 366 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms