RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 TOP3AQ13472 1001 aaPredicted RBP4.87□□□□□ -1.63
PTCD3-216ENST00000487043 KRT72Q14CN4 511 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 EIF4HQ15056 248 aaKnown RBP4.87□□□□□ -1.63
PTCD3-216ENST00000487043 FLYWCH1Q4VC44 716 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 KHDC1LQ5JSQ8 128 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 TMED8Q6PL24 325 aaPredicted RBP4.87□□□□□ -1.63
PTCD3-216ENST00000487043 IGDCC3Q8IVU1 814 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 CELF5Q8N6W0 485 aaKnown RBP4.87□□□□□ -1.63
PTCD3-216ENST00000487043 LINC00482Q8N8I6 264 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 REPS2Q8NFH8 660 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 OR7D4Q8NG98 312 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 IFI44Q8TCB0 444 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 ZCCHC14Q8WYQ9 949 aaKnown RBP4.87□□□□□ -1.63
PTCD3-216ENST00000487043 GFM2Q969S9 779 aaKnown RBP4.87□□□□□ -1.63
PTCD3-216ENST00000487043 CYFIP2Q96F07 1278 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 BORCS6Q96GS4 357 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.87□□□□□ -1.63
PTCD3-216ENST00000487043 BCO1Q9HAY6 547 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 SARS2Q9NP81 518 aaKnown RBP4.87□□□□□ -1.63
PTCD3-216ENST00000487043 CNNM1Q9NRU3 951 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 LANCL2Q9NS86 450 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 SPATA6Q9NWH7 488 aaPredicted RBP4.87□□□□□ -1.63
PTCD3-216ENST00000487043 ING3Q9NXR8 418 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 GPRC5BQ9NZH0 403 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 CALCOCO1Q9P1Z2 691 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 CPNE7Q9UBL6 633 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 TRPS1Q9UHF7 1281 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 AJAP1Q9UKB5 411 aaPredicted RBP4.87□□□□□ -1.63
PTCD3-216ENST00000487043 FAM184BQ9ULE4 1060 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 DHX29Q7Z478 1369 aaKnown RBP4.87□□□□□ -1.63
PTCD3-216ENST00000487043 ATP7AQ04656 1500 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 KDM5CP41229 1560 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 TSPOAP1O95153 1857 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 POM121BA6NF01 834 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 TBX3O15119 743 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 PPFIA4O75335 1185 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 ITGA10O75578 1167 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 FGAP02671 866 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 DDCP20711 480 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 PTPN7P35236 360 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 MEOX1P50221 254 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 RRADP55042 308 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 SUMO3P55854 103 aaPredicted RBP4.86□□□□□ -1.63
PTCD3-216ENST00000487043 SESN2P58004 480 aaPredicted RBP4.86□□□□□ -1.63
PTCD3-216ENST00000487043 FMO1Q01740 532 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 ZNF543Q08ER8 600 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 CNGA2Q16280 664 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 TMEM95Q3KNT9 176 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 CCDC174Q6PII3 467 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 CLEC14AQ86T13 490 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 CCDC33Q8N5R6 958 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 SYT8Q8NBV8 401 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 PLA2G15Q8NCC3 412 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 NUDT10Q8NFP7 164 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 BRIX1Q8TDN6 353 aaKnown RBP4.86□□□□□ -1.63
PTCD3-216ENST00000487043 NUDT11Q96G61 164 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 SCLT1Q96NL6 688 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 WDR12Q9GZL7 423 aaKnown RBP4.86□□□□□ -1.63
PTCD3-216ENST00000487043 WDCPQ9H6R7 721 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 STARD7Q9NQZ5 370 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 TMEM140Q9NV12 185 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 GPRC5DQ9NZD1 345 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 LUZP4Q9P127 313 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 VWA7Q9Y334 891 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 RBM8AQ9Y5S9 174 aaKnown RBP4.86□□□□□ -1.63
PTCD3-216ENST00000487043 ERBINQ96RT1 1412 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 ZFYVE16Q7Z3T8 1539 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 INO80Q9ULG1 1556 aaPredicted RBP4.86□□□□□ -1.63
PTCD3-216ENST00000487043 KIDINS220Q9ULH0 1771 aa4.86□□□□□ -1.63
PTCD3-216ENST00000487043 C2orf78A6NCI8 922 aa4.85□□□□□ -1.63
PTCD3-216ENST00000487043 GPR32O75388 356 aa4.85□□□□□ -1.63
PTCD3-216ENST00000487043 AHSGP02765 367 aa4.85□□□□□ -1.63
PTCD3-216ENST00000487043 ADRB1P08588 477 aa4.85□□□□□ -1.63
PTCD3-216ENST00000487043 NPR1P16066 1061 aa4.85□□□□□ -1.63
PTCD3-216ENST00000487043 RPL17P18621 184 aaKnown RBP4.85□□□□□ -1.63
PTCD3-216ENST00000487043 PPM1AP35813 382 aa4.85□□□□□ -1.63
PTCD3-216ENST00000487043 IL6STP40189 918 aaPredicted RBP4.85□□□□□ -1.63
PTCD3-216ENST00000487043 ETV4P43268 484 aa4.85□□□□□ -1.63
PTCD3-216ENST00000487043 MAPK10P53779 464 aa4.85□□□□□ -1.63
PTCD3-216ENST00000487043 TNFAIP2Q03169 654 aa4.85□□□□□ -1.63
PTCD3-216ENST00000487043 PCOLCEQ15113 449 aa4.85□□□□□ -1.63
PTCD3-216ENST00000487043 TUBB8Q3ZCM7 444 aa4.85□□□□□ -1.63
PTCD3-216ENST00000487043 DGKKQ5KSL6 1271 aa4.85□□□□□ -1.63
PTCD3-216ENST00000487043 IZUMO3Q5VZ72 239 aa4.85□□□□□ -1.63
PTCD3-216ENST00000487043 TRIM68Q6AZZ1 485 aa4.85□□□□□ -1.63
PTCD3-216ENST00000487043 LARP4Q71RC2 724 aaKnown RBP eCLIP4.85□□□□□ -1.63
PTCD3-216ENST00000487043 GGNQ86UU5 652 aa4.85□□□□□ -1.63
PTCD3-216ENST00000487043 PPP1R3BQ86XI6 285 aa4.85□□□□□ -1.63
PTCD3-216ENST00000487043 TMEFF1Q8IYR6 380 aa4.85□□□□□ -1.63
PTCD3-216ENST00000487043 CPXCR1Q8N123 301 aa4.85□□□□□ -1.63
PTCD3-216ENST00000487043 LILRA3Q8N6C8 439 aaPredicted RBP4.85□□□□□ -1.63
PTCD3-216ENST00000487043 GCDHQ92947 438 aaPredicted RBP4.85□□□□□ -1.63
PTCD3-216ENST00000487043 PWWP2AQ96N64 755 aa4.85□□□□□ -1.63
PTCD3-216ENST00000487043 C1orf43Q9BWL3 253 aa4.85□□□□□ -1.63
PTCD3-216ENST00000487043 ADAM7Q9H2U9 754 aa4.85□□□□□ -1.63
PTCD3-216ENST00000487043 L2HGDHQ9H9P8 463 aa4.85□□□□□ -1.63
PTCD3-216ENST00000487043 PNPLA8Q9NP80 782 aa4.85□□□□□ -1.63
PTCD3-216ENST00000487043 SACM1LQ9NTJ5 587 aa4.85□□□□□ -1.63
PTCD3-216ENST00000487043 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.85□□□□□ -1.63
PTCD3-216ENST00000487043 RUVBL1Q9Y265 456 aaKnown RBP4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms