RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 POLD4Q9HCU8 107 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 STIM2Q9P246 746 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 HSFX1Q9UBD0 423 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 ITM2BQ9Y287 266 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 ATP8A1Q9Y2Q0 1164 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 EPN1Q9Y6I3 576 aaPredicted RBP8.22□□□□□ -1.09
USP4-211ENST00000485450 H3BRB1 525 aa8.21□□□□□ -1.09
USP4-211ENST00000485450 ZNF185O15231 689 aa8.21□□□□□ -1.09
USP4-211ENST00000485450 PGK1P00558 417 aa8.21□□□□□ -1.09
USP4-211ENST00000485450 PAEPP09466 180 aa8.21□□□□□ -1.09
USP4-211ENST00000485450 HARSP12081 509 aaKnown RBP8.21□□□□□ -1.09
USP4-211ENST00000485450 CCND1P24385 295 aa8.21□□□□□ -1.09
USP4-211ENST00000485450 MARCKSP29966 332 aaPredicted RBP8.21□□□□□ -1.09
USP4-211ENST00000485450 CNGA1P29973 690 aa8.21□□□□□ -1.09
USP4-211ENST00000485450 FAM189BP81408 668 aa8.21□□□□□ -1.09
USP4-211ENST00000485450 XKR3Q5GH77 459 aa8.21□□□□□ -1.09
USP4-211ENST00000485450 GJC2Q5T442 439 aaPredicted RBP8.21□□□□□ -1.09
USP4-211ENST00000485450 CDKAL1Q5VV42 579 aa8.21□□□□□ -1.09
USP4-211ENST00000485450 MFSD5Q6N075 450 aa8.21□□□□□ -1.09
USP4-211ENST00000485450 TAF2Q6P1X5 1199 aa8.21□□□□□ -1.09
USP4-211ENST00000485450 CCDC63Q8NA47 563 aa8.21□□□□□ -1.09
USP4-211ENST00000485450 USP38Q8NB14 1042 aa8.21□□□□□ -1.09
USP4-211ENST00000485450 SPATA20Q8TB22 786 aa8.21□□□□□ -1.09
USP4-211ENST00000485450 PAWRQ96IZ0 340 aaKnown RBP8.21□□□□□ -1.09
USP4-211ENST00000485450 FIZ1Q96SL8 496 aa8.21□□□□□ -1.09
USP4-211ENST00000485450 OSBPL1AQ9BXW6 950 aa8.21□□□□□ -1.09
USP4-211ENST00000485450 RNPEPQ9H4A4 650 aa8.21□□□□□ -1.09
USP4-211ENST00000485450 TUT1Q9H6E5 874 aaKnown RBP8.21□□□□□ -1.09
USP4-211ENST00000485450 SLC12A6Q9UHW9 1150 aa8.21□□□□□ -1.09
USP4-211ENST00000485450 KRT38O76015 456 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 ITGB8P26012 769 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 CLCN2P51788 898 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 OXCT1P55809 520 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 CBX3Q13185 183 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 TRIM14Q14142 442 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 CALCRLQ16602 461 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 PLEKHG4Q58EX7 1191 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 SEPT14Q6ZU15 432 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 MAATS1Q7Z4T9 603 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 APBB1IPQ7Z5R6 666 aaPredicted RBP8.21□□□□□ -1.1
USP4-211ENST00000485450 ERICH1Q86X53 443 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 CREG2Q8IUH2 290 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 MYOCDQ8IZQ8 938 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 ATP11CQ8NB49 1132 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 WNT8BQ93098 351 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 CCDC43Q96MW1 224 aaKnown RBP8.21□□□□□ -1.1
USP4-211ENST00000485450 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.21□□□□□ -1.13e-7■■■□□ 18.7
USP4-211ENST00000485450 IRF2BPLQ9H1B7 796 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 CUEDC2Q9H467 287 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 DISC1Q9NRI5 854 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 KCNH3Q9ULD8 1083 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 GMEB1Q9Y692 573 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 EVPLQ92817 2033 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 TDRD15B5MCY1 1934 aaKnown RBP8.21□□□□□ -1.1
USP4-211ENST00000485450 MAGEB2O15479 319 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 CCNT1O60563 726 aaKnown RBP8.21□□□□□ -1.1
USP4-211ENST00000485450 PIGRP01833 764 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 MYCLP1P12525 358 aaPredicted RBP8.21□□□□□ -1.1
USP4-211ENST00000485450 ALDH3A1P30838 453 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 ENPEPQ07075 957 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 MAPK7Q13164 816 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 GRB10Q13322 594 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 MBTPS1Q14703 1052 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 SAFBQ15424 915 aaKnown RBP eCLIP8.21□□□□□ -1.1
USP4-211ENST00000485450 ZNF394Q53GI3 561 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 NAALADL2Q58DX5 795 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 GKAP1Q5VSY0 366 aaPredicted RBP8.21□□□□□ -1.1
USP4-211ENST00000485450 SPATA1Q5VX52 437 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 NCCRP1Q6ZVX7 275 aaPredicted RBP8.21□□□□□ -1.1
USP4-211ENST00000485450 FAM114A1Q8IWE2 563 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 ZBTB8BQ8NAP8 495 aaPredicted RBP8.21□□□□□ -1.1
USP4-211ENST00000485450 SNRNP27Q8WVK2 155 aaKnown RBP8.21□□□□□ -1.1
USP4-211ENST00000485450 EIF2AK1Q9BQI3 630 aaKnown RBP8.21□□□□□ -1.1
USP4-211ENST00000485450 C17orf75Q9HAS0 396 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 ZNF302Q9NR11 478 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 CEP131Q9UPN4 1083 aa8.21□□□□□ -1.1
USP4-211ENST00000485450 CCT8L1PA6NM43 557 aa8.2□□□□□ -1.1
USP4-211ENST00000485450 DYNC1LI2O43237 492 aaPredicted RBP8.2□□□□□ -1.1
USP4-211ENST00000485450 ALDH2P05091 517 aa8.2□□□□□ -1.1
USP4-211ENST00000485450 VIMP08670 466 aaKnown RBP8.2□□□□□ -1.1
USP4-211ENST00000485450 PRR16Q569H4 304 aa8.2□□□□□ -1.1
USP4-211ENST00000485450 BRDTQ58F21 947 aaPredicted RBP8.2□□□□□ -1.1
USP4-211ENST00000485450 C16orf59Q7L2K0 433 aa8.2□□□□□ -1.1
USP4-211ENST00000485450 ZNF410Q86VK4 478 aa8.2□□□□□ -1.1
USP4-211ENST00000485450 HOOK3Q86VS8 718 aa8.2□□□□□ -1.1
USP4-211ENST00000485450 CATSPER3Q86XQ3 398 aa8.2□□□□□ -1.1
USP4-211ENST00000485450 APBB2Q92870 758 aa8.2□□□□□ -1.1
USP4-211ENST00000485450 FAM167BQ9BTA0 163 aa8.2□□□□□ -1.1
USP4-211ENST00000485450 PANK4Q9NVE7 773 aa8.2□□□□□ -1.1
USP4-211ENST00000485450 ATXN10Q9UBB4 475 aa8.2□□□□□ -1.1
USP4-211ENST00000485450 FRMD4BQ9Y2L6 1034 aa8.2□□□□□ -1.1
USP4-211ENST00000485450 NDUFB5O43674 189 aa8.2□□□□□ -1.1
USP4-211ENST00000485450 POU3F3P20264 500 aaPredicted RBP8.2□□□□□ -1.1
USP4-211ENST00000485450 QARSP47897 775 aaKnown RBP8.2□□□□□ -1.1
USP4-211ENST00000485450 LBRQ14739 615 aaKnown RBP8.2□□□□□ -1.1
USP4-211ENST00000485450 KIAA0753Q2KHM9 967 aa8.2□□□□□ -1.1
USP4-211ENST00000485450 LRIT3Q3SXY7 679 aa8.2□□□□□ -1.1
USP4-211ENST00000485450 TRIM60Q495X7 471 aa8.2□□□□□ -1.1
USP4-211ENST00000485450 CCDC122Q5T0U0 273 aa8.2□□□□□ -1.1
USP4-211ENST00000485450 HAUS3Q68CZ6 603 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms