RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 CRACR2AQ9BSW2 395 aa13.19□□□□□ -0.3
SDC1-206ENST00000482879 RAB20Q9NX57 234 aa13.19□□□□□ -0.3
SDC1-206ENST00000482879 FAN1Q9Y2M0 1017 aa13.19□□□□□ -0.3
SDC1-206ENST00000482879 COQ4Q9Y3A0 265 aa13.19□□□□□ -0.3
SDC1-206ENST00000482879 MRPL42Q9Y6G3 142 aaKnown RBP13.19□□□□□ -0.3
SDC1-206ENST00000482879 NLRC5Q86WI3 1866 aa13.19□□□□□ -0.3
SDC1-206ENST00000482879 GTPBP10A4D1E9 387 aaKnown RBP13.18□□□□□ -0.3
SDC1-206ENST00000482879 PPEF2O14830 753 aa13.18□□□□□ -0.3
SDC1-206ENST00000482879 TEX33O43247 280 aa13.18□□□□□ -0.3
SDC1-206ENST00000482879 CBFA2T2O43439 604 aa13.18□□□□□ -0.3
SDC1-206ENST00000482879 CLSTN1O94985 981 aa13.18□□□□□ -0.3
SDC1-206ENST00000482879 GALTP07902 379 aa13.18□□□□□ -0.3
SDC1-206ENST00000482879 SLC11A1P49279 550 aa13.18□□□□□ -0.3
SDC1-206ENST00000482879 BCAR1P56945 870 aa13.18□□□□□ -0.3
SDC1-206ENST00000482879 MYL6P60660 151 aa13.18□□□□□ -0.3
SDC1-206ENST00000482879 NR1I3Q14994 352 aa13.18□□□□□ -0.3
SDC1-206ENST00000482879 UPP1Q16831 310 aa13.18□□□□□ -0.3
SDC1-206ENST00000482879 EXOC3L4Q17RC7 722 aa13.18□□□□□ -0.3
SDC1-206ENST00000482879 EPC2Q52LR7 807 aa13.18□□□□□ -0.3
SDC1-206ENST00000482879 DCLRE1AQ6PJP8 1040 aa13.18□□□□□ -0.3
SDC1-206ENST00000482879 SARM1Q6SZW1 724 aa13.18□□□□□ -0.3
SDC1-206ENST00000482879 EHBP1Q8NDI1 1231 aa13.18□□□□□ -0.3
SDC1-206ENST00000482879 SP7Q8TDD2 431 aaPredicted RBP13.18□□□□□ -0.3
SDC1-206ENST00000482879 SEMA4DQ92854 862 aa13.18□□□□□ -0.3
SDC1-206ENST00000482879 HPDLQ96IR7 371 aa13.18□□□□□ -0.3
SDC1-206ENST00000482879 COLEC11Q9BWP8 271 aa13.18□□□□□ -0.3
SDC1-206ENST00000482879 TRIM5Q9C035 493 aa13.18□□□□□ -0.3
SDC1-206ENST00000482879 XPO4Q9C0E2 1151 aaKnown RBP13.18□□□□□ -0.3
SDC1-206ENST00000482879 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.18□□□□□ -0.3
SDC1-206ENST00000482879 PRG3Q9Y2Y8 225 aaPredicted RBP13.18□□□□□ -0.3
SDC1-206ENST00000482879 FSD2A1L4K1 749 aa13.17□□□□□ -0.3
SDC1-206ENST00000482879 LCHNA4D1U4 455 aa13.17□□□□□ -0.3
SDC1-206ENST00000482879 NT5C1B-RDH14C9J2C7 533 aa13.17□□□□□ -0.3
SDC1-206ENST00000482879 NRP1O14786 923 aa13.17□□□□□ -0.3
SDC1-206ENST00000482879 AP5Z1O43299 807 aa13.17□□□□□ -0.3
SDC1-206ENST00000482879 LRRN2O75325 713 aa13.17□□□□□ -0.3
SDC1-206ENST00000482879 B3GAT3O94766 335 aa13.17□□□□□ -0.3
SDC1-206ENST00000482879 TPM3P06753 285 aa13.17□□□□□ -0.3
SDC1-206ENST00000482879 MYOGP15173 224 aa13.17□□□□□ -0.3
SDC1-206ENST00000482879 LAG3P18627 525 aa13.17□□□□□ -0.3
SDC1-206ENST00000482879 ATICP31939 592 aa13.17□□□□□ -0.3
SDC1-206ENST00000482879 ALDH7A1P49419 539 aaKnown RBP13.17□□□□□ -0.3
SDC1-206ENST00000482879 TAF6P49848 677 aa13.17□□□□□ -0.3
SDC1-206ENST00000482879 MYO1EQ12965 1108 aa13.17□□□□□ -0.3
SDC1-206ENST00000482879 GSE1Q14687 1217 aa13.17□□□□□ -0.3
SDC1-206ENST00000482879 SGSM1Q2NKQ1 1148 aa13.17□□□□□ -0.3
SDC1-206ENST00000482879 WDR44Q5JSH3 913 aa13.17□□□□□ -0.3
SDC1-206ENST00000482879 KCNT2Q6UVM3 1135 aa13.17□□□□□ -0.3
SDC1-206ENST00000482879 LRRC52Q8N7C0 313 aa13.17□□□□□ -0.3
SDC1-206ENST00000482879 CCDC150Q8NCX0 1101 aa13.17□□□□□ -0.3
SDC1-206ENST00000482879 ZNF560Q96MR9 790 aa13.17□□□□□ -0.3
SDC1-206ENST00000482879 ZNF558Q96NG5 402 aa13.17□□□□□ -0.3
SDC1-206ENST00000482879 PI4K2AQ9BTU6 479 aa13.17□□□□□ -0.3
SDC1-206ENST00000482879 IMPG2Q9BZV3 1241 aa13.17□□□□□ -0.3
SDC1-206ENST00000482879 INTS2Q9H0H0 1204 aaKnown RBP13.17□□□□□ -0.3
SDC1-206ENST00000482879 PRO3102Q9H379 93 aa13.17□□□□□ -0.3
SDC1-206ENST00000482879 AAASQ9NRG9 546 aa13.17□□□□□ -0.3
SDC1-206ENST00000482879 GCNT4Q9P109 453 aa13.17□□□□□ -0.3
SDC1-206ENST00000482879 PCDHA11Q9Y5I1 949 aa13.17□□□□□ -0.3
SDC1-206ENST00000482879 TADA2AO75478 443 aa13.16□□□□□ -0.3
SDC1-206ENST00000482879 ASS1P00966 412 aaKnown RBP13.16□□□□□ -0.3
SDC1-206ENST00000482879 SLC9A1P19634 815 aa13.16□□□□□ -0.3
SDC1-206ENST00000482879 IGFBP6P24592 240 aaPredicted RBP13.16□□□□□ -0.3
SDC1-206ENST00000482879 PON1P27169 355 aa13.16□□□□□ -0.3
SDC1-206ENST00000482879 PBX3P40426 434 aa13.16□□□□□ -0.3
SDC1-206ENST00000482879 PNPLA4P41247 253 aa13.16□□□□□ -0.3
SDC1-206ENST00000482879 LILRA4P59901 499 aa13.16□□□□□ -0.3
SDC1-206ENST00000482879 KCNMA1Q12791 1236 aa13.16□□□□□ -0.3
SDC1-206ENST00000482879 LRMPQ12912 555 aa13.16□□□□□ -0.3
SDC1-206ENST00000482879 SYCP1Q15431 976 aa13.16□□□□□ -0.3
SDC1-206ENST00000482879 PTPN21Q16825 1174 aa13.16□□□□□ -0.3
SDC1-206ENST00000482879 ZNF699Q32M78 642 aa13.16□□□□□ -0.3
SDC1-206ENST00000482879 SV2CQ496J9 727 aa13.16□□□□□ -0.3
SDC1-206ENST00000482879 COLGALT1Q8NBJ5 622 aa13.16□□□□□ -0.3
SDC1-206ENST00000482879 C3orf58Q8NDZ4 430 aa13.16□□□□□ -0.3
SDC1-206ENST00000482879 LMO3Q8TAP4 145 aa13.16□□□□□ -0.3
SDC1-206ENST00000482879 HASPINQ8TF76 798 aa13.16□□□□□ -0.3
SDC1-206ENST00000482879 TAF4BQ92750 862 aa13.16□□□□□ -0.3
SDC1-206ENST00000482879 ELMO3Q96BJ8 720 aa13.16□□□□□ -0.3
SDC1-206ENST00000482879 PCMTD1Q96MG8 357 aaPredicted RBP13.16□□□□□ -0.3
SDC1-206ENST00000482879 ERGIC2Q96RQ1 377 aa13.16□□□□□ -0.3
SDC1-206ENST00000482879 LSM14BQ9BX40 385 aaKnown RBP13.16□□□□□ -0.3
SDC1-206ENST00000482879 XYLT2Q9H1B5 865 aa13.16□□□□□ -0.3
SDC1-206ENST00000482879 GRPEL1Q9HAV7 217 aa13.16□□□□□ -0.3
SDC1-206ENST00000482879 MSRAQ9UJ68 235 aa13.16□□□□□ -0.3
SDC1-206ENST00000482879 NUB1Q9Y5A7 615 aa13.16□□□□□ -0.3
SDC1-206ENST00000482879 TRIOBPQ9H2D6 2365 aa13.15□□□□□ -0.3
SDC1-206ENST00000482879 LINC01553A4QN01 128 aa13.15□□□□□ -0.3
SDC1-206ENST00000482879 CARNS1A5YM72 827 aa13.15□□□□□ -0.3
SDC1-206ENST00000482879 KPNA7A9QM74 516 aa13.15□□□□□ -0.3
SDC1-206ENST00000482879 F8W810 466 aa13.15□□□□□ -0.3
SDC1-206ENST00000482879 TMEM189-UBE2V1I3L0A0 370 aa13.15□□□□□ -0.3
SDC1-206ENST00000482879 SPTLC1O15269 473 aa13.15□□□□□ -0.3
SDC1-206ENST00000482879 KIF4AO95239 1232 aa13.15□□□□□ -0.3
SDC1-206ENST00000482879 STAU1O95793 577 aaKnown RBP13.15□□□□□ -0.3
SDC1-206ENST00000482879 ITGB1P05556 798 aa13.15□□□□□ -0.3
SDC1-206ENST00000482879 PBX2P40425 430 aa13.15□□□□□ -0.3
SDC1-206ENST00000482879 NOP14P78316 857 aaKnown RBP13.15□□□□□ -0.3
SDC1-206ENST00000482879 RAB30Q15771 203 aa13.15□□□□□ -0.3
SDC1-206ENST00000482879 WDR72Q3MJ13 1102 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms