RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 SV2CQ496J9 727 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 GLRA4Q5JXX5 417 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 KRT39Q6A163 491 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 DPH6Q7L8W6 267 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 KLHL23Q8NBE8 558 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 CCDC150Q8NCX0 1101 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 PPP2R3CQ969Q6 453 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 CCDC127Q96BQ5 260 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 FUCA2Q9BTY2 467 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 FAM124BQ9H5Z6 455 aaPredicted RBP8.91□□□□□ -0.98
USP54-212ENST00000480210 TMEM8AQ9HCN3 771 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 NGRNQ9NPE2 291 aaKnown RBP8.91□□□□□ -0.98
USP54-212ENST00000480210 ADAM28Q9UKQ2 775 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 DSEQ9UL01 958 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 PLAGL2Q9UPG8 496 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 NUB1Q9Y5A7 615 aa8.91□□□□□ -0.98
USP54-212ENST00000480210 SF3B1O75533 1304 aaKnown RBP eCLIP8.9□□□□□ -0.98
USP54-212ENST00000480210 SYCE3A1L190 88 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 CASTOR2A6NHX0 329 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 LRRIQ3A6PVS8 624 aaPredicted RBP8.9□□□□□ -0.98
USP54-212ENST00000480210 BECN2A8MW95 431 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 MEFVO15553 781 aaPredicted RBP8.9□□□□□ -0.98
USP54-212ENST00000480210 PHACTR2O75167 634 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 C4BPAP04003 597 aaKnown RBP8.9□□□□□ -0.98
USP54-212ENST00000480210 SOD2P04179 222 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 NFICP08651 508 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 P4HA1P13674 534 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 TYMPP19971 482 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 ZNF165P49910 485 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 CLCNKBP51801 687 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 DMTNQ08495 405 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 SGSM1Q2NKQ1 1148 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 USP41Q3LFD5 358 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 ZACNQ401N2 412 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 ANO6Q4KMQ2 910 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 C9orf57Q5W0N0 161 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 FUT10Q6P4F1 479 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 LRSAM1Q6UWE0 723 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 TRAPPC11Q7Z392 1133 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 CREBRFQ8IUR6 639 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 EFCAB13Q8IY85 973 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 ZSWIM2Q8NEG5 633 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 APPL2Q8NEU8 664 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 SPPL3Q8TCT6 385 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 FAM81BQ96LP2 452 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 GAS2L1Q99501 681 aaPredicted RBP8.9□□□□□ -0.98
USP54-212ENST00000480210 C17orf80Q9BSJ5 609 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 HERC2P3Q9BVR0 1158 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 IMPG2Q9BZV3 1241 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 DNAI2Q9GZS0 605 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 DNAJC25Q9H1X3 360 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 VRTNQ9H8Y1 702 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.9□□□□□ -0.98
USP54-212ENST00000480210 DNAJB4Q9UDY4 337 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.9□□□□□ -0.98
USP54-212ENST00000480210 IRAK3Q9Y616 596 aa8.9□□□□□ -0.98
USP54-212ENST00000480210 VWA8A3KMH1 1905 aa8.9□□□□□ -0.99
USP54-212ENST00000480210 LRRC10BA6NIK2 292 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 H7C4K7 107 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 M0QZQ0 153 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 NCK2O43639 380 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 EFEMP2O95967 443 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 ITGB1P05556 798 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 KRT19P08727 400 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 CTSAP10619 480 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 CDK11BP21127 795 aaKnown RBP8.89□□□□□ -0.99
USP54-212ENST00000480210 MTIF2P46199 727 aaKnown RBP8.89□□□□□ -0.99
USP54-212ENST00000480210 AARSP49588 968 aaKnown RBP eCLIP8.89□□□□□ -0.99
USP54-212ENST00000480210 LILRA4P59901 499 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 ZNF445P59923 1031 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 SOX4Q06945 474 aaPredicted RBP8.89□□□□□ -0.99
USP54-212ENST00000480210 BIRC3Q13489 604 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 MAN2A1Q16706 1144 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 TCERG1LQ5VWI1 586 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 DSTYKQ6XUX3 929 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 C15orf39Q6ZRI6 1047 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 SV2AQ7L0J3 742 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 METTL23Q86XA0 190 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 TRIM59Q8IWR1 403 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 RNF168Q8IYW5 571 aaPredicted RBP8.89□□□□□ -0.99
USP54-212ENST00000480210 TMEM86AQ8N2M4 240 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 TTC39CQ8N584 583 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 C1orf127Q8N9H9 656 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 POF1BQ8WVV4 589 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 ARNTL2Q8WYA1 636 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 C18orf25Q96B23 403 aaPredicted RBP8.89□□□□□ -0.99
USP54-212ENST00000480210 SUSD3Q96L08 255 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 CDCA3Q99618 268 aaPredicted RBP8.89□□□□□ -0.99
USP54-212ENST00000480210 TSPYL1Q9H0U9 437 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 TLR9Q9NR96 1032 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 GDAP2Q9NXN4 497 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 PCDHB8Q9UN66 801 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 AGAP1Q9UPQ3 857 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 PRG3Q9Y2Y8 225 aaPredicted RBP8.89□□□□□ -0.99
USP54-212ENST00000480210 COQ4Q9Y3A0 265 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 NFE2L3Q9Y4A8 694 aa8.89□□□□□ -0.99
USP54-212ENST00000480210 GTPBP10A4D1E9 387 aaKnown RBP8.88□□□□□ -0.99
USP54-212ENST00000480210 KPNA7A9QM74 516 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 NT5C1B-RDH14C9J2C7 533 aa8.88□□□□□ -0.99
USP54-212ENST00000480210 AFPP02771 609 aaKnown RBP8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms