RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 SH3TC2Q8TF17 1288 aa19.89■□□□□ 0.77
CCDC88B-207ENST00000479965 GATA6Q92908 595 aa19.89■□□□□ 0.77
CCDC88B-207ENST00000479965 KCNQ5Q9NR82 932 aa19.89■□□□□ 0.77
CCDC88B-207ENST00000479965 ARMCX1Q9P291 453 aa19.89■□□□□ 0.77
CCDC88B-207ENST00000479965 ANKFY1Q9P2R3 1169 aa19.89■□□□□ 0.77
CCDC88B-207ENST00000479965 SMG5Q9UPR3 1016 aaKnown RBP19.89■□□□□ 0.77
CCDC88B-207ENST00000479965 CREB3O43889 395 aa19.89■□□□□ 0.77
CCDC88B-207ENST00000479965 ZSCAN5DPP0CG00 497 aa19.89■□□□□ 0.77
CCDC88B-207ENST00000479965 GCAP28676 217 aa19.89■□□□□ 0.77
CCDC88B-207ENST00000479965 RASA3Q14644 834 aa19.89■□□□□ 0.77
CCDC88B-207ENST00000479965 CTC1Q2NKJ3 1217 aa19.89■□□□□ 0.77
CCDC88B-207ENST00000479965 CCDC62Q6P9F0 684 aa19.89■□□□□ 0.77
CCDC88B-207ENST00000479965 IZUMO2Q6UXV1 221 aa19.89■□□□□ 0.77
CCDC88B-207ENST00000479965 SLCO2A1Q92959 643 aa19.89■□□□□ 0.77
CCDC88B-207ENST00000479965 NSL1Q96IY1 281 aa19.89■□□□□ 0.77
CCDC88B-207ENST00000479965 TIPINQ9BVW5 301 aa19.89■□□□□ 0.77
CCDC88B-207ENST00000479965 SAR1AQ9NR31 198 aa19.89■□□□□ 0.77
CCDC88B-207ENST00000479965 LNPEPQ9UIQ6 1025 aa19.89■□□□□ 0.77
CCDC88B-207ENST00000479965 SH3BP1Q9Y3L3 701 aa19.89■□□□□ 0.77
CCDC88B-207ENST00000479965 NEU2Q9Y3R4 380 aa19.89■□□□□ 0.77
CCDC88B-207ENST00000479965 MROH7Q68CQ1 1323 aa19.89■□□□□ 0.77
CCDC88B-207ENST00000479965 GOLGA8SH3BPF8 625 aa19.88■□□□□ 0.77
CCDC88B-207ENST00000479965 GOLGA8MH3BSY2 632 aa19.88■□□□□ 0.77
CCDC88B-207ENST00000479965 EIF3DO15371 548 aaKnown RBP eCLIP19.88■□□□□ 0.77
CCDC88B-207ENST00000479965 MSH4O15457 936 aa19.88■□□□□ 0.77
CCDC88B-207ENST00000479965 MUTP22033 750 aa19.88■□□□□ 0.77
CCDC88B-207ENST00000479965 AMPD1P23109 780 aa19.88■□□□□ 0.77
CCDC88B-207ENST00000479965 AP1B1Q10567 949 aa19.88■□□□□ 0.77
CCDC88B-207ENST00000479965 CNPY1Q3B7I2 92 aa19.88■□□□□ 0.77
CCDC88B-207ENST00000479965 MDH1BQ5I0G3 518 aa19.88■□□□□ 0.77
CCDC88B-207ENST00000479965 KAZNQ674X7 775 aa19.88■□□□□ 0.77
CCDC88B-207ENST00000479965 ZNF720Q7Z2F6 126 aa19.88■□□□□ 0.77
CCDC88B-207ENST00000479965 ZBED8Q8IZ13 594 aa19.88■□□□□ 0.77
CCDC88B-207ENST00000479965 MAK16Q9BXY0 300 aaKnown RBP19.88■□□□□ 0.77
CCDC88B-207ENST00000479965 KRT82Q9NSB4 513 aa19.88■□□□□ 0.77
CCDC88B-207ENST00000479965 PDP2Q9P2J9 529 aa19.88■□□□□ 0.77
CCDC88B-207ENST00000479965 USTQ9Y2C2 406 aa19.88■□□□□ 0.77
CCDC88B-207ENST00000479965 ZWINTO95229 277 aa19.88■□□□□ 0.77
CCDC88B-207ENST00000479965 LYNP07948 512 aa19.88■□□□□ 0.77
CCDC88B-207ENST00000479965 SNHG28P0DPA3 235 aa19.88■□□□□ 0.77
CCDC88B-207ENST00000479965 MAN1A1P33908 653 aa19.88■□□□□ 0.77
CCDC88B-207ENST00000479965 NOP14P78316 857 aaKnown RBP19.88■□□□□ 0.77
CCDC88B-207ENST00000479965 TUBGCP5Q96RT8 1024 aa19.88■□□□□ 0.77
CCDC88B-207ENST00000479965 TLE6Q9H808 572 aa19.88■□□□□ 0.77
CCDC88B-207ENST00000479965 DMAP1Q9NPF5 467 aaPredicted RBP19.88■□□□□ 0.77
CCDC88B-207ENST00000479965 EURLQ9NYK6 297 aa19.88■□□□□ 0.77
CCDC88B-207ENST00000479965 GTF3C4Q9UKN8 822 aa19.88■□□□□ 0.77
CCDC88B-207ENST00000479965 EEF2P13639 858 aaKnown RBP19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 PGM1P36871 562 aa19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 FMO1Q01740 532 aa19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 NR1H3Q13133 447 aa19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 TTC7BQ86TV6 843 aa19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 LRRC6Q86X45 466 aa19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 ANKMY2Q8IV38 441 aa19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 PTPRN2Q92932 1015 aa19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 KLHL11Q9NVR0 708 aa19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 TAS2R1Q9NYW7 299 aa19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 SEC23IPQ9Y6Y8 1000 aaKnown RBP19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 PRPF4O43172 522 aaKnown RBP eCLIP19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 BANF1O75531 89 aa19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 VAMP7P51809 220 aa19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 ARFIP2P53365 341 aa19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 LRRC36Q1X8D7 754 aa19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 WDR72Q3MJ13 1102 aa19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 SYDE1Q6ZW31 735 aaPredicted RBP19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 RIBC1Q8N443 379 aaPredicted RBP19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 TAB3Q8N5C8 712 aaPredicted RBP19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 OPTNQ96CV9 577 aa19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 TRIM55Q9BYV6 548 aa19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 VCX3BQ9H321 246 aa19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 VCX3AQ9NNX9 186 aa19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 STX18Q9P2W9 335 aaKnown RBP19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 RPL26L1Q9UNX3 145 aaKnown RBP19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 hCG_2014768A0A024R1R8 64 aa19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 NFIXQ14938 502 aa19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 STXBP4Q6ZWJ1 553 aa19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 CFAP61Q8NHU2 1237 aa19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 NOCTQ9UK39 431 aaKnown RBP19.87■□□□□ 0.77
CCDC88B-207ENST00000479965 MEIS2O14770 477 aa19.86■□□□□ 0.77
CCDC88B-207ENST00000479965 CYP1A2P05177 515 aa19.86■□□□□ 0.77
CCDC88B-207ENST00000479965 GLIS1Q8NBF1 620 aa19.86■□□□□ 0.77
CCDC88B-207ENST00000479965 ZSWIM2Q8NEG5 633 aa19.86■□□□□ 0.77
CCDC88B-207ENST00000479965 TMEM117Q9H0C3 514 aa19.86■□□□□ 0.77
CCDC88B-207ENST00000479965 KANSL3Q9P2N6 904 aa19.86■□□□□ 0.77
CCDC88B-207ENST00000479965 UVRAGQ9P2Y5 699 aa19.86■□□□□ 0.77
CCDC88B-207ENST00000479965 SRCAPQ6ZRS2 3230 aa19.86■□□□□ 0.77
CCDC88B-207ENST00000479965 KIF13BQ9NQT8 1826 aa19.86■□□□□ 0.77
CCDC88B-207ENST00000479965 GOLGA8IPA6NC78 632 aa19.86■□□□□ 0.77
CCDC88B-207ENST00000479965 GOLGA8JA6NMD2 632 aa19.86■□□□□ 0.77
CCDC88B-207ENST00000479965 GZMAP12544 262 aa19.86■□□□□ 0.77
CCDC88B-207ENST00000479965 ETS1P14921 441 aa19.86■□□□□ 0.77
CCDC88B-207ENST00000479965 CD58P19256 250 aa19.86■□□□□ 0.77
CCDC88B-207ENST00000479965 SCNN1BP51168 640 aa19.86■□□□□ 0.77
CCDC88B-207ENST00000479965 GPATCH4Q5T3I0 446 aaKnown RBP19.86■□□□□ 0.77
CCDC88B-207ENST00000479965 ITGB4P16144 1822 aa19.86■□□□□ 0.77
CCDC88B-207ENST00000479965 OPHN1O60890 802 aa19.85■□□□□ 0.77
CCDC88B-207ENST00000479965 KRT5P13647 590 aa19.85■□□□□ 0.77
CCDC88B-207ENST00000479965 RTP1P59025 263 aa19.85■□□□□ 0.77
CCDC88B-207ENST00000479965 CCDC127Q96BQ5 260 aa19.85■□□□□ 0.77
CCDC88B-207ENST00000479965 FAM210AQ96ND0 272 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms