RNA–Protein interactions for RNA: ENST00000478531.5

BRCA1-215, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,972 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-215ENST00000478531 DPP3Q9NY33 737 aa7.46□□□□□ -1.21
BRCA1-215ENST00000478531 THEGQ9P2T0 379 aa7.46□□□□□ -1.21
BRCA1-215ENST00000478531 BARX2Q9UMQ3 279 aaPredicted RBP7.46□□□□□ -1.21
BRCA1-215ENST00000478531 DERAQ9Y315 318 aa7.46□□□□□ -1.21
BRCA1-215ENST00000478531 PTPRJQ12913 1337 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 TRIM49BA6NDI0 452 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 TMEM189-UBE2V1I3L0A0 370 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 TRAPPC3O43617 180 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 TBX10O75333 385 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 EFEMP2O95967 443 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 ITGB3P05106 788 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 CNPP09543 421 aaKnown RBP7.46□□□□□ -1.22
BRCA1-215ENST00000478531 TNNI1P19237 187 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 CYP3A5P20815 502 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 KLRC2P26717 231 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 LRPAP1P30533 357 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 CASP4P49662 377 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 DSG1Q02413 1049 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 ZBTB6Q15916 424 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 PSMD5Q16401 504 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 DUSP6Q16828 381 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 C9orf57Q5W0N0 161 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 CD300LGQ6UXG3 332 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 C12orf56Q8IXR9 622 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 RNF168Q8IYW5 571 aaPredicted RBP7.46□□□□□ -1.22
BRCA1-215ENST00000478531 EFHBQ8N7U6 833 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 VN1R2Q8NFZ6 395 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 GPT2Q8TD30 523 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 CACTINQ8WUQ7 758 aaKnown RBP7.46□□□□□ -1.22
BRCA1-215ENST00000478531 PABPC5Q96DU9 382 aaKnown RBP7.46□□□□□ -1.22
BRCA1-215ENST00000478531 ANKRD36BP1Q96IX9 119 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 FBXL18Q96ME1 805 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 POP1Q99575 1024 aaKnown RBP7.46□□□□□ -1.22
BRCA1-215ENST00000478531 EMILIN2Q9BXX0 1053 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 NUP62CLQ9H1M0 184 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 KIAA1468Q9P260 1216 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 CTNND2Q9UQB3 1225 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 FRMD4BQ9Y2L6 1034 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 C2orf16Q68DN1 1984 aa7.46□□□□□ -1.22
BRCA1-215ENST00000478531 PSMA7O14818 248 aa7.45□□□□□ -1.22
BRCA1-215ENST00000478531 TEX28O15482 410 aa7.45□□□□□ -1.22
BRCA1-215ENST00000478531 CLASP2O75122 1294 aaKnown RBP7.45□□□□□ -1.22
BRCA1-215ENST00000478531 GLP2RO95838 553 aa7.45□□□□□ -1.22
BRCA1-215ENST00000478531 TNNC2P02585 160 aa7.45□□□□□ -1.22
BRCA1-215ENST00000478531 ADH1AP07327 375 aa7.45□□□□□ -1.22
BRCA1-215ENST00000478531 SRGAP2BP0DMP2 458 aa7.45□□□□□ -1.22
BRCA1-215ENST00000478531 BMP6P22004 513 aa7.45□□□□□ -1.22
BRCA1-215ENST00000478531 POLR2BP30876 1174 aaKnown RBP7.45□□□□□ -1.22
BRCA1-215ENST00000478531 VASPP50552 380 aaPredicted RBP7.45□□□□□ -1.22
BRCA1-215ENST00000478531 POU5F1Q01860 360 aaKnown RBP7.45□□□□□ -1.22
BRCA1-215ENST00000478531 DLX2Q07687 328 aaPredicted RBP7.45□□□□□ -1.22
BRCA1-215ENST00000478531 MORC3Q14149 939 aa7.45□□□□□ -1.22
BRCA1-215ENST00000478531 KIAA0319Q5VV43 1072 aa7.45□□□□□ -1.22
BRCA1-215ENST00000478531 DSTYKQ6XUX3 929 aa7.45□□□□□ -1.22
BRCA1-215ENST00000478531 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.45□□□□□ -1.22
BRCA1-215ENST00000478531 NT5DC4Q86YG4 428 aa7.45□□□□□ -1.22
BRCA1-215ENST00000478531 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.45□□□□□ -1.22
BRCA1-215ENST00000478531 ADSSL1Q8N142 457 aa7.45□□□□□ -1.22
BRCA1-215ENST00000478531 C1orf127Q8N9H9 656 aa7.45□□□□□ -1.22
BRCA1-215ENST00000478531 SPDYE1Q8NFV5 336 aaPredicted RBP7.45□□□□□ -1.22
BRCA1-215ENST00000478531 OR5B17Q8NGF7 314 aa7.45□□□□□ -1.22
BRCA1-215ENST00000478531 TSPAN18Q96SJ8 248 aa7.45□□□□□ -1.22
BRCA1-215ENST00000478531 CDCA3Q99618 268 aaPredicted RBP7.45□□□□□ -1.22
BRCA1-215ENST00000478531 CGRRF1Q99675 332 aa7.45□□□□□ -1.22
BRCA1-215ENST00000478531 TSG101Q99816 390 aa7.45□□□□□ -1.22
BRCA1-215ENST00000478531 APOL5Q9BWW9 433 aa7.45□□□□□ -1.22
BRCA1-215ENST00000478531 GTPBP4Q9BZE4 634 aaKnown RBP7.45□□□□□ -1.22
BRCA1-215ENST00000478531 CHST7Q9NS84 486 aa7.45□□□□□ -1.22
BRCA1-215ENST00000478531 TRAF3IP3Q9Y228 551 aa7.45□□□□□ -1.22
BRCA1-215ENST00000478531 SSX2IPQ9Y2D8 614 aa7.45□□□□□ -1.22
BRCA1-215ENST00000478531 R3HCC1Q9Y3T6 440 aaKnown RBP7.45□□□□□ -1.22
BRCA1-215ENST00000478531 TIMM13Q9Y5L4 95 aaPredicted RBP7.45□□□□□ -1.22
BRCA1-215ENST00000478531 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.45□□□□□ -1.22
BRCA1-215ENST00000478531 HCFC2Q9Y5Z7 792 aa7.45□□□□□ -1.22
BRCA1-215ENST00000478531 IRAK3Q9Y616 596 aa7.45□□□□□ -1.22
BRCA1-215ENST00000478531 NCK2O43639 380 aa7.44□□□□□ -1.22
BRCA1-215ENST00000478531 CD44P16070 742 aaKnown RBP7.44□□□□□ -1.22
BRCA1-215ENST00000478531 EPCAMP16422 314 aa7.44□□□□□ -1.22
BRCA1-215ENST00000478531 CDK11BP21127 795 aaKnown RBP7.44□□□□□ -1.22
BRCA1-215ENST00000478531 FGFR3P22607 806 aa7.44□□□□□ -1.22
BRCA1-215ENST00000478531 RPL13P26373 211 aaKnown RBP7.44□□□□□ -1.22
BRCA1-215ENST00000478531 PMS1P54277 932 aaKnown RBP7.44□□□□□ -1.22
BRCA1-215ENST00000478531 LILRA4P59901 499 aa7.44□□□□□ -1.22
BRCA1-215ENST00000478531 BFSP1Q12934 665 aa7.44□□□□□ -1.22
BRCA1-215ENST00000478531 ADAM9Q13443 819 aa7.44□□□□□ -1.22
BRCA1-215ENST00000478531 PSMD6Q15008 389 aa7.44□□□□□ -1.22
BRCA1-215ENST00000478531 SURF1Q15526 300 aa7.44□□□□□ -1.22
BRCA1-215ENST00000478531 ZCWPW2Q504Y3 356 aa7.44□□□□□ -1.22
BRCA1-215ENST00000478531 VARS2Q5ST30 1063 aaKnown RBP7.44□□□□□ -1.22
BRCA1-215ENST00000478531 PALB2Q86YC2 1186 aa7.44□□□□□ -1.22
BRCA1-215ENST00000478531 WDR49Q8IV35 697 aa7.44□□□□□ -1.22
BRCA1-215ENST00000478531 SLC9A9Q8IVB4 645 aa7.44□□□□□ -1.22
BRCA1-215ENST00000478531 FAM186BQ8IYM0 893 aa7.44□□□□□ -1.22
BRCA1-215ENST00000478531 CSGALNACT2Q8N6G5 542 aa7.44□□□□□ -1.22
BRCA1-215ENST00000478531 SUSD3Q96L08 255 aa7.44□□□□□ -1.22
BRCA1-215ENST00000478531 ZNF560Q96MR9 790 aa7.44□□□□□ -1.22
BRCA1-215ENST00000478531 KLHL5Q96PQ7 755 aa7.44□□□□□ -1.22
BRCA1-215ENST00000478531 INTS13Q9NVM9 706 aa7.44□□□□□ -1.22
BRCA1-215ENST00000478531 DMAC2Q9NW81 257 aa7.44□□□□□ -1.22
BRCA1-215ENST00000478531 ITGA11Q9UKX5 1188 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms