RNA–Protein interactions for RNA: ENST00000476625.5

HDAC6-219, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-219ENST00000476625 CCDC169A6NNP5 214 aa13.13□□□□□ -0.31
HDAC6-219ENST00000476625 E9PMD0 336 aa13.13□□□□□ -0.31
HDAC6-219ENST00000476625 HRO43593 1189 aa13.13□□□□□ -0.31
HDAC6-219ENST00000476625 SOAT2O75908 522 aa13.13□□□□□ -0.31
HDAC6-219ENST00000476625 CHRNB1P11230 501 aa13.13□□□□□ -0.31
HDAC6-219ENST00000476625 ATF2P15336 505 aa13.13□□□□□ -0.31
HDAC6-219ENST00000476625 RPA1P27694 616 aa13.13□□□□□ -0.31
HDAC6-219ENST00000476625 ELF1P32519 619 aa13.13□□□□□ -0.31
HDAC6-219ENST00000476625 GRM5P41594 1212 aa13.13□□□□□ -0.31
HDAC6-219ENST00000476625 PEX3P56589 373 aa13.13□□□□□ -0.31
HDAC6-219ENST00000476625 LMNB2Q03252 620 aa13.13□□□□□ -0.31
HDAC6-219ENST00000476625 CTXN3Q4LDR2 81 aa13.13□□□□□ -0.31
HDAC6-219ENST00000476625 TXNDC11Q6PKC3 985 aa13.13□□□□□ -0.31
HDAC6-219ENST00000476625 PDZD4Q76G19 769 aaPredicted RBP13.13□□□□□ -0.31
HDAC6-219ENST00000476625 TCEAL8Q8IYN2 117 aa13.13□□□□□ -0.31
HDAC6-219ENST00000476625 TTC9BQ8N6N2 239 aa13.13□□□□□ -0.31
HDAC6-219ENST00000476625 SHKBP1Q8TBC3 707 aa13.13□□□□□ -0.31
HDAC6-219ENST00000476625 ZSCAN18Q8TBC5 510 aaPredicted RBP13.13□□□□□ -0.31
HDAC6-219ENST00000476625 WASF1Q92558 559 aa13.13□□□□□ -0.31
HDAC6-219ENST00000476625 DNASE1L2Q92874 299 aa13.13□□□□□ -0.31
HDAC6-219ENST00000476625 LRRC3BQ96PB8 259 aa13.13□□□□□ -0.31
HDAC6-219ENST00000476625 PTPRHQ9HD43 1115 aa13.13□□□□□ -0.31
HDAC6-219ENST00000476625 AVENQ9NQS1 362 aaPredicted RBP13.13□□□□□ -0.31
HDAC6-219ENST00000476625 POLR3BQ9NW08 1133 aaPredicted RBP13.13□□□□□ -0.31
HDAC6-219ENST00000476625 GMEB2Q9UKD1 530 aa13.13□□□□□ -0.31
HDAC6-219ENST00000476625 GREB1Q4ZG55 1949 aa13.12□□□□□ -0.31
HDAC6-219ENST00000476625 SFI1A8K8P3 1242 aa13.12□□□□□ -0.31
HDAC6-219ENST00000476625 HEPACAM2A8MVW5 462 aa13.12□□□□□ -0.31
HDAC6-219ENST00000476625 ARNTLO00327 626 aa13.12□□□□□ -0.31
HDAC6-219ENST00000476625 NCAM2O15394 837 aa13.12□□□□□ -0.31
HDAC6-219ENST00000476625 OR52Z1P0C646 297 aa13.12□□□□□ -0.31
HDAC6-219ENST00000476625 CCT6AP40227 531 aaKnown RBP13.12□□□□□ -0.31
HDAC6-219ENST00000476625 MAGEA9P43362 315 aa13.12□□□□□ -0.31
HDAC6-219ENST00000476625 NPTX2P47972 431 aa13.12□□□□□ -0.31
HDAC6-219ENST00000476625 GUCY2FP51841 1108 aa13.12□□□□□ -0.31
HDAC6-219ENST00000476625 RAD51AP2Q09MP3 1159 aa13.12□□□□□ -0.31
HDAC6-219ENST00000476625 MRPL58Q14197 206 aaKnown RBP13.12□□□□□ -0.31
HDAC6-219ENST00000476625 XKR4Q5GH76 650 aa13.12□□□□□ -0.31
HDAC6-219ENST00000476625 PPM1JQ5JR12 505 aa13.12□□□□□ -0.31
HDAC6-219ENST00000476625 PKN3Q6P5Z2 889 aa13.12□□□□□ -0.31
HDAC6-219ENST00000476625 KCNK18Q7Z418 384 aa13.12□□□□□ -0.31
HDAC6-219ENST00000476625 DDX12PQ92771 950 aa13.12□□□□□ -0.31
HDAC6-219ENST00000476625 UROC1Q96N76 676 aa13.12□□□□□ -0.31
HDAC6-219ENST00000476625 TMEM209Q96SK2 561 aa13.12□□□□□ -0.31
HDAC6-219ENST00000476625 NELL2Q99435 816 aa13.12□□□□□ -0.31
HDAC6-219ENST00000476625 RUSC1Q9BVN2 902 aa13.12□□□□□ -0.31
HDAC6-219ENST00000476625 HAPLN2Q9GZV7 340 aa13.12□□□□□ -0.31
HDAC6-219ENST00000476625 DDX19AQ9NUU7 478 aaKnown RBP13.12□□□□□ -0.31
HDAC6-219ENST00000476625 KIAA1024Q9UPX6 916 aa13.12□□□□□ -0.31
HDAC6-219ENST00000476625 TNFSF13BQ9Y275 285 aa13.12□□□□□ -0.31
HDAC6-219ENST00000476625 MYO16Q9Y6X6 1858 aa13.12□□□□□ -0.31
HDAC6-219ENST00000476625 PHLPP2Q6ZVD8 1323 aa13.12□□□□□ -0.31
HDAC6-219ENST00000476625 KIAA1549LQ6ZVL6 1849 aa13.11□□□□□ -0.31
HDAC6-219ENST00000476625 A0A1W2PRU2 124 aa13.11□□□□□ -0.31
HDAC6-219ENST00000476625 K7ERI5 159 aa13.11□□□□□ -0.31
HDAC6-219ENST00000476625 K7ESF4 209 aa13.11□□□□□ -0.31
HDAC6-219ENST00000476625 HIP1RO75146 1068 aa13.11□□□□□ -0.31
HDAC6-219ENST00000476625 ADRB1P08588 477 aa13.11□□□□□ -0.31
HDAC6-219ENST00000476625 CPB1P15086 417 aa13.11□□□□□ -0.31
HDAC6-219ENST00000476625 PSMC3P17980 439 aa13.11□□□□□ -0.31
HDAC6-219ENST00000476625 CDC25AP30304 524 aa13.11□□□□□ -0.31
HDAC6-219ENST00000476625 MCM4P33991 863 aa13.11□□□□□ -0.31
HDAC6-219ENST00000476625 PXNP49023 591 aaPredicted RBP13.11□□□□□ -0.31
HDAC6-219ENST00000476625 MAPK7Q13164 816 aa13.11□□□□□ -0.31
HDAC6-219ENST00000476625 SIM2Q14190 667 aaPredicted RBP13.11□□□□□ -0.31
HDAC6-219ENST00000476625 TMC8Q8IU68 726 aa13.11□□□□□ -0.31
HDAC6-219ENST00000476625 C4orf32Q8N8J7 132 aa13.11□□□□□ -0.31
HDAC6-219ENST00000476625 SMARCD2Q92925 531 aa13.11□□□□□ -0.31
HDAC6-219ENST00000476625 SECISBP2LQ93073 1101 aaKnown RBP13.11□□□□□ -0.31
HDAC6-219ENST00000476625 IFT74Q96LB3 600 aa13.11□□□□□ -0.31
HDAC6-219ENST00000476625 TBC1D32Q96NH3 1257 aa13.11□□□□□ -0.31
HDAC6-219ENST00000476625 RTKNQ9BST9 563 aa13.11□□□□□ -0.31
HDAC6-219ENST00000476625 CCDC94Q9BW85 323 aaPredicted RBP13.11□□□□□ -0.31
HDAC6-219ENST00000476625 LRRC3Q9BY71 257 aa13.11□□□□□ -0.31
HDAC6-219ENST00000476625 DNAJC25Q9H1X3 360 aa13.11□□□□□ -0.31
HDAC6-219ENST00000476625 RXFP3Q9NSD7 469 aa13.11□□□□□ -0.31
HDAC6-219ENST00000476625 SEMA4GQ9NTN9 838 aa13.11□□□□□ -0.31
HDAC6-219ENST00000476625 SLC27A5Q9Y2P5 690 aa13.11□□□□□ -0.31
HDAC6-219ENST00000476625 MRPS17Q9Y2R5 130 aaKnown RBP13.11□□□□□ -0.31
HDAC6-219ENST00000476625 YIPF1Q9Y548 306 aa13.11□□□□□ -0.31
HDAC6-219ENST00000476625 NUB1Q9Y5A7 615 aa13.11□□□□□ -0.31
HDAC6-219ENST00000476625 TCHHQ07283 1943 aa13.11□□□□□ -0.31
HDAC6-219ENST00000476625 DENND4CQ5VZ89 1909 aa13.1□□□□□ -0.31
HDAC6-219ENST00000476625 ATG2BQ96BY7 2078 aa13.1□□□□□ -0.31
HDAC6-219ENST00000476625 PRR5-ARHGAP8B1AHC4 643 aa13.1□□□□□ -0.31
HDAC6-219ENST00000476625 PPEF2O14830 753 aa13.1□□□□□ -0.31
HDAC6-219ENST00000476625 SLC16A4O15374 487 aa13.1□□□□□ -0.31
HDAC6-219ENST00000476625 EPB41L2O43491 1005 aaKnown RBP13.1□□□□□ -0.31
HDAC6-219ENST00000476625 TRAPPC3O43617 180 aa13.1□□□□□ -0.31
HDAC6-219ENST00000476625 YARSP54577 528 aaKnown RBP13.1□□□□□ -0.31
HDAC6-219ENST00000476625 ARHGAP8P85298 464 aa13.1□□□□□ -0.31
HDAC6-219ENST00000476625 TRIM29Q14134 588 aa13.1□□□□□ -0.31
HDAC6-219ENST00000476625 PPP2R5AQ15172 486 aa13.1□□□□□ -0.31
HDAC6-219ENST00000476625 IL17AQ16552 155 aa13.1□□□□□ -0.31
HDAC6-219ENST00000476625 ST3GAL2Q16842 350 aa13.1□□□□□ -0.31
HDAC6-219ENST00000476625 SLC10A6Q3KNW5 377 aa13.1□□□□□ -0.31
HDAC6-219ENST00000476625 TTC38Q5R3I4 469 aa13.1□□□□□ -0.31
HDAC6-219ENST00000476625 LAIR1Q6GTX8 287 aa13.1□□□□□ -0.31
HDAC6-219ENST00000476625 PRR23CQ6ZRP0 262 aa13.1□□□□□ -0.31
HDAC6-219ENST00000476625 IRF7Q92985 503 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms