RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 FSHRP23945 695 aa15.36■□□□□ 0.05
UPF3A-204ENST00000475218 ADSSP30520 456 aa15.36■□□□□ 0.05
UPF3A-204ENST00000475218 MATR3P43243 847 aaKnown RBP eCLIP15.36■□□□□ 0.05
UPF3A-204ENST00000475218 ZNF720Q7Z2F6 126 aa15.36■□□□□ 0.05
UPF3A-204ENST00000475218 LINC00301Q8NCQ3 95 aa15.36■□□□□ 0.05
UPF3A-204ENST00000475218 ZNF461Q8TAF7 563 aa15.36■□□□□ 0.05
UPF3A-204ENST00000475218 KIF12Q96FN5 646 aa15.36■□□□□ 0.05
UPF3A-204ENST00000475218 PANK2Q9BZ23 570 aa15.36■□□□□ 0.05
UPF3A-204ENST00000475218 ZSCAN16Q9H4T2 348 aaPredicted RBP15.36■□□□□ 0.05
UPF3A-204ENST00000475218 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.36■□□□□ 0.05
UPF3A-204ENST00000475218 TSC2P49815 1807 aa15.36■□□□□ 0.05
UPF3A-204ENST00000475218 CACNA1HO95180 2353 aa15.35■□□□□ 0.05
UPF3A-204ENST00000475218 M0QZQ0 153 aa15.35■□□□□ 0.05
UPF3A-204ENST00000475218 VNN2O95498 520 aa15.35■□□□□ 0.05
UPF3A-204ENST00000475218 CASP5P51878 434 aa15.35■□□□□ 0.05
UPF3A-204ENST00000475218 UVSSAQ2YD98 709 aa15.35■□□□□ 0.05
UPF3A-204ENST00000475218 RRAGBQ5VZM2 374 aa15.35■□□□□ 0.05
UPF3A-204ENST00000475218 CRELD2Q6UXH1 353 aaPredicted RBP15.35■□□□□ 0.05
UPF3A-204ENST00000475218 MSTO1Q9BUK6 570 aa15.35■□□□□ 0.05
UPF3A-204ENST00000475218 NUB1Q9Y5A7 615 aa15.35■□□□□ 0.05
UPF3A-204ENST00000475218 ARHGEF37A1IGU5 675 aa15.34■□□□□ 0.05
UPF3A-204ENST00000475218 FRMD3A2A2Y4 597 aa15.34■□□□□ 0.05
UPF3A-204ENST00000475218 KRBA1A5PL33 1030 aa15.34■□□□□ 0.05
UPF3A-204ENST00000475218 NFICP08651 508 aa15.34■□□□□ 0.05
UPF3A-204ENST00000475218 CYP3A5P20815 502 aa15.34■□□□□ 0.05
UPF3A-204ENST00000475218 MCM4P33991 863 aa15.34■□□□□ 0.05
UPF3A-204ENST00000475218 ACOT2P49753 483 aa15.34■□□□□ 0.05
UPF3A-204ENST00000475218 WNT7BP56706 349 aa15.34■□□□□ 0.05
UPF3A-204ENST00000475218 SLC5A9Q2M3M2 681 aa15.34■□□□□ 0.05
UPF3A-204ENST00000475218 SPATA1Q5VX52 437 aa15.34■□□□□ 0.05
UPF3A-204ENST00000475218 KRI1Q8N9T8 703 aaKnown RBP15.34■□□□□ 0.05
UPF3A-204ENST00000475218 ZSWIM2Q8NEG5 633 aa15.34■□□□□ 0.05
UPF3A-204ENST00000475218 FGF13Q92913 245 aa15.34■□□□□ 0.05
UPF3A-204ENST00000475218 FGF14Q92915 247 aa15.34■□□□□ 0.05
UPF3A-204ENST00000475218 TFIP11Q9UBB9 837 aaKnown RBP15.34■□□□□ 0.05
UPF3A-204ENST00000475218 CCDC39Q9UFE4 941 aa15.34■□□□□ 0.05
UPF3A-204ENST00000475218 UBQLN1Q9UMX0 589 aaKnown RBP15.34■□□□□ 0.05
UPF3A-204ENST00000475218 PCDHB8Q9UN66 801 aa15.34■□□□□ 0.05
UPF3A-204ENST00000475218 COL4A3Q01955 1670 aa15.34■□□□□ 0.05
UPF3A-204ENST00000475218 MYO15AQ9UKN7 3530 aa15.34■□□□□ 0.05
UPF3A-204ENST00000475218 SCN1AP35498 2009 aa15.34■□□□□ 0.05
UPF3A-204ENST00000475218 SPTLC1O15269 473 aa15.34■□□□□ 0.05
UPF3A-204ENST00000475218 PI15O43692 258 aa15.34■□□□□ 0.05
UPF3A-204ENST00000475218 ATF2P15336 505 aa15.34■□□□□ 0.05
UPF3A-204ENST00000475218 PPP2R3AQ06190 1150 aa15.34■□□□□ 0.05
UPF3A-204ENST00000475218 JADE1Q6IE81 842 aa15.34■□□□□ 0.05
UPF3A-204ENST00000475218 PARM1Q6UWI2 310 aa15.34■□□□□ 0.05
UPF3A-204ENST00000475218 RPF1Q9H9Y2 349 aaKnown RBP15.34■□□□□ 0.05
UPF3A-204ENST00000475218 TBC1D7Q9P0N9 293 aa15.34■□□□□ 0.05
UPF3A-204ENST00000475218 CDH7Q9ULB5 785 aa15.34■□□□□ 0.05
UPF3A-204ENST00000475218 POLIQ9UNA4 740 aa15.34■□□□□ 0.05
UPF3A-204ENST00000475218 TIMM13Q9Y5L4 95 aaPredicted RBP15.34■□□□□ 0.05
UPF3A-204ENST00000475218 NUMBLQ9Y6R0 609 aa15.34■□□□□ 0.05
UPF3A-204ENST00000475218 ARPP19P56211 112 aa15.33■□□□□ 0.04
UPF3A-204ENST00000475218 PKP1Q13835 747 aa15.33■□□□□ 0.04
UPF3A-204ENST00000475218 E2F4Q16254 413 aa15.33■□□□□ 0.04
UPF3A-204ENST00000475218 KYAT1Q16773 422 aa15.33■□□□□ 0.04
UPF3A-204ENST00000475218 CTXN3Q4LDR2 81 aa15.33■□□□□ 0.04
UPF3A-204ENST00000475218 SV2BQ7L1I2 683 aa15.33■□□□□ 0.04
UPF3A-204ENST00000475218 RTL10Q7L3V2 364 aa15.33■□□□□ 0.04
UPF3A-204ENST00000475218 NPAS3Q8IXF0 933 aa15.33■□□□□ 0.04
UPF3A-204ENST00000475218 TCEAL8Q8IYN2 117 aa15.33■□□□□ 0.04
UPF3A-204ENST00000475218 WDR87Q6ZQQ6 2873 aa15.33■□□□□ 0.04
UPF3A-204ENST00000475218 ANO9A1A5B4 782 aa15.32■□□□□ 0.04
UPF3A-204ENST00000475218 XYLBO75191 536 aa15.32■□□□□ 0.04
UPF3A-204ENST00000475218 OAZ2O95190 189 aa15.32■□□□□ 0.04
UPF3A-204ENST00000475218 CFHP08603 1231 aa15.32■□□□□ 0.04
UPF3A-204ENST00000475218 FOXD4L5Q5VV16 416 aaPredicted RBP15.32■□□□□ 0.04
UPF3A-204ENST00000475218 SCARA3Q6AZY7 606 aa15.32■□□□□ 0.04
UPF3A-204ENST00000475218 ASTLQ6HA08 431 aaPredicted RBP15.32■□□□□ 0.04
UPF3A-204ENST00000475218 RNF19BQ6ZMZ0 732 aa15.32■□□□□ 0.04
UPF3A-204ENST00000475218 ALYREFQ86V81 257 aaKnown RBP15.32■□□□□ 0.04
UPF3A-204ENST00000475218 SIX5Q8N196 739 aa15.32■□□□□ 0.04
UPF3A-204ENST00000475218 GLIS3Q8NEA6 775 aa15.32■□□□□ 0.04
UPF3A-204ENST00000475218 BEST2Q8NFU1 509 aa15.32■□□□□ 0.04
UPF3A-204ENST00000475218 FOXD4L4Q8WXT5 416 aaPredicted RBP15.32■□□□□ 0.04
UPF3A-204ENST00000475218 NXPE3Q969Y0 559 aa15.32■□□□□ 0.04
UPF3A-204ENST00000475218 CRISPLD1Q9H336 500 aa15.32■□□□□ 0.04
UPF3A-204ENST00000475218 SEL1LQ9UBV2 794 aa15.32■□□□□ 0.04
UPF3A-204ENST00000475218 H7C4K7 107 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 RHOP08100 348 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 OR4Q2P0C623 313 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 SRFP11831 508 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 CCR2P41597 374 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 STAT6P42226 847 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 PABPC1LQ4VXU2 614 aaKnown RBP15.31■□□□□ 0.04
UPF3A-204ENST00000475218 PRSS36Q5K4E3 855 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 C9orf57Q5W0N0 161 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 ADALQ6DHV7 355 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 CCDC73Q6ZRK6 1079 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 EFCAB13Q8IY85 973 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 PDILTQ8N807 584 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 ING5Q8WYH8 240 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 HVCN1Q96D96 273 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 FAM212AQ96EL1 285 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 OLFML3Q9NRN5 406 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 AGO2Q9UKV8 859 aaKnown RBP15.31■□□□□ 0.04
UPF3A-204ENST00000475218 INSL5Q9Y5Q6 135 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 PIRO00625 290 aa15.31■□□□□ 0.04
UPF3A-204ENST00000475218 SPTLC2O15270 562 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms