RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 COLEC12Q5KU26 742 aa8.95□□□□□ -0.98
USP54-211ENST00000474929 TPGS2Q68CL5 300 aa8.95□□□□□ -0.98
USP54-211ENST00000474929 SLC8B1Q6J4K2 584 aa8.95□□□□□ -0.98
USP54-211ENST00000474929 FSTL4Q6MZW2 842 aa8.95□□□□□ -0.98
USP54-211ENST00000474929 ZNF574Q6ZN55 896 aaPredicted RBP8.95□□□□□ -0.98
USP54-211ENST00000474929 PNPLA1Q8N8W4 532 aa8.95□□□□□ -0.98
USP54-211ENST00000474929 BPIFB1Q8TDL5 484 aa8.95□□□□□ -0.98
USP54-211ENST00000474929 WHAMMQ8TF30 809 aa8.95□□□□□ -0.98
USP54-211ENST00000474929 PIBF1Q8WXW3 757 aa8.95□□□□□ -0.98
USP54-211ENST00000474929 ARID3AQ99856 593 aa8.95□□□□□ -0.98
USP54-211ENST00000474929 ANO3Q9BYT9 981 aa8.95□□□□□ -0.98
USP54-211ENST00000474929 TPSD1Q9BZJ3 242 aa8.95□□□□□ -0.98
USP54-211ENST00000474929 CYP4F11Q9HBI6 524 aa8.95□□□□□ -0.98
USP54-211ENST00000474929 CAPN10Q9HC96 672 aa8.95□□□□□ -0.98
USP54-211ENST00000474929 ANKMY1Q9P2S6 941 aa8.95□□□□□ -0.98
USP54-211ENST00000474929 SUSD2Q9UGT4 822 aa8.95□□□□□ -0.98
USP54-211ENST00000474929 IL17BQ9UHF5 180 aa8.95□□□□□ -0.98
USP54-211ENST00000474929 PPME1Q9Y570 386 aa8.95□□□□□ -0.98
USP54-211ENST00000474929 COL4A3BPQ9Y5P4 624 aa8.95□□□□□ -0.98
USP54-211ENST00000474929 HEMK1Q9Y5R4 338 aaPredicted RBP8.95□□□□□ -0.98
USP54-211ENST00000474929 C2CD3Q4AC94 2353 aa8.94□□□□□ -0.98
USP54-211ENST00000474929 KIF26AQ9ULI4 1882 aaPredicted RBP8.94□□□□□ -0.98
USP54-211ENST00000474929 PCDH15Q96QU1 1955 aa8.94□□□□□ -0.98
USP54-211ENST00000474929 DHX15O43143 795 aaKnown RBP8.94□□□□□ -0.98
USP54-211ENST00000474929 ADAM12O43184 909 aa8.94□□□□□ -0.98
USP54-211ENST00000474929 DDAH1O94760 285 aa8.94□□□□□ -0.98
USP54-211ENST00000474929 MYL4P12829 197 aa8.94□□□□□ -0.98
USP54-211ENST00000474929 BCKDHBP21953 392 aa8.94□□□□□ -0.98
USP54-211ENST00000474929 ITPKBP27987 946 aa8.94□□□□□ -0.98
USP54-211ENST00000474929 WEE1P30291 646 aa8.94□□□□□ -0.98
USP54-211ENST00000474929 HOXA11P31270 313 aaPredicted RBP8.94□□□□□ -0.98
USP54-211ENST00000474929 P2RY2P41231 377 aa8.94□□□□□ -0.98
USP54-211ENST00000474929 ROR1Q01973 937 aa8.94□□□□□ -0.98
USP54-211ENST00000474929 TEAD2Q15562 447 aa8.94□□□□□ -0.98
USP54-211ENST00000474929 PKDCCQ504Y2 493 aa8.94□□□□□ -0.98
USP54-211ENST00000474929 XKR3Q5GH77 459 aa8.94□□□□□ -0.98
USP54-211ENST00000474929 C6orf118Q5T5N4 469 aa8.94□□□□□ -0.98
USP54-211ENST00000474929 SLC36A4Q6YBV0 504 aa8.94□□□□□ -0.98
USP54-211ENST00000474929 ZNF589Q86UQ0 364 aaPredicted RBP8.94□□□□□ -0.98
USP54-211ENST00000474929 RDM1Q8NG50 284 aa8.94□□□□□ -0.98
USP54-211ENST00000474929 SNIP1Q8TAD8 396 aaKnown RBP8.94□□□□□ -0.98
USP54-211ENST00000474929 PSPC1Q8WXF1 523 aaKnown RBP8.94□□□□□ -0.98
USP54-211ENST00000474929 SLC7A3Q8WY07 619 aa8.94□□□□□ -0.98
USP54-211ENST00000474929 ZSWIM3Q96MP5 696 aa8.94□□□□□ -0.98
USP54-211ENST00000474929 CSRNP2Q9H175 543 aa8.94□□□□□ -0.98
USP54-211ENST00000474929 IFT122Q9HBG6 1241 aa8.94□□□□□ -0.98
USP54-211ENST00000474929 KCNK4Q9NYG8 393 aa8.94□□□□□ -0.98
USP54-211ENST00000474929 DNMT3LQ9UJW3 386 aa8.94□□□□□ -0.98
USP54-211ENST00000474929 NCANO14594 1321 aa8.94□□□□□ -0.98
USP54-211ENST00000474929 COL5A1P20908 1838 aaPredicted RBP8.94□□□□□ -0.98
USP54-211ENST00000474929 PLXND1Q9Y4D7 1925 aa8.93□□□□□ -0.98
USP54-211ENST00000474929 A0A1W2PQD8 194 aa8.93□□□□□ -0.98
USP54-211ENST00000474929 hCG_1984214I3L0E3 225 aa8.93□□□□□ -0.98
USP54-211ENST00000474929 ASAP2O43150 1006 aa8.93□□□□□ -0.98
USP54-211ENST00000474929 MAFO75444 373 aaPredicted RBP8.93□□□□□ -0.98
USP54-211ENST00000474929 ABLIM3O94929 683 aa8.93□□□□□ -0.98
USP54-211ENST00000474929 HNF1BP35680 557 aa8.93□□□□□ -0.98
USP54-211ENST00000474929 DRP2Q13474 957 aa8.93□□□□□ -0.98
USP54-211ENST00000474929 CAMK2BQ13554 666 aa8.93□□□□□ -0.98
USP54-211ENST00000474929 MTERF2Q49AM1 385 aa8.93□□□□□ -0.98
USP54-211ENST00000474929 C2orf27AQ580R0 203 aa8.93□□□□□ -0.98
USP54-211ENST00000474929 BROXQ5VW32 411 aa8.93□□□□□ -0.98
USP54-211ENST00000474929 ANO7Q6IWH7 933 aa8.93□□□□□ -0.98
USP54-211ENST00000474929 PRICKLE2Q7Z3G6 844 aa8.93□□□□□ -0.98
USP54-211ENST00000474929 ARID3BQ8IVW6 561 aaPredicted RBP8.93□□□□□ -0.98
USP54-211ENST00000474929 CMTR1Q8N1G2 835 aaKnown RBP8.93□□□□□ -0.98
USP54-211ENST00000474929 ZNF713Q8N859 430 aaPredicted RBP8.93□□□□□ -0.98
USP54-211ENST00000474929 OLIG1Q8TAK6 271 aa8.93□□□□□ -0.98
USP54-211ENST00000474929 TTC8Q8TAM2 541 aa8.93□□□□□ -0.98
USP54-211ENST00000474929 PANK1Q8TE04 598 aa8.93□□□□□ -0.98
USP54-211ENST00000474929 HASPINQ8TF76 798 aa8.93□□□□□ -0.98
USP54-211ENST00000474929 FAM227BQ96M60 508 aa8.93□□□□□ -0.98
USP54-211ENST00000474929 TBC1D32Q96NH3 1257 aa8.93□□□□□ -0.98
USP54-211ENST00000474929 P2RY13Q9BPV8 354 aa8.93□□□□□ -0.98
USP54-211ENST00000474929 FAM124BQ9H5Z6 455 aaPredicted RBP8.93□□□□□ -0.98
USP54-211ENST00000474929 DISC1Q9NRI5 854 aa8.93□□□□□ -0.98
USP54-211ENST00000474929 PCOLCE2Q9UKZ9 415 aa8.93□□□□□ -0.98
USP54-211ENST00000474929 LRRK2Q5S007 2527 aa8.92□□□□□ -0.98
USP54-211ENST00000474929 ATXN2Q99700 1313 aaKnown RBP8.92□□□□□ -0.98
USP54-211ENST00000474929 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.92□□□□□ -0.98
USP54-211ENST00000474929 H7C4K7 107 aa8.92□□□□□ -0.98
USP54-211ENST00000474929 IFIT3O14879 490 aaKnown RBP8.92□□□□□ -0.98
USP54-211ENST00000474929 FLRT2O43155 660 aa8.92□□□□□ -0.98
USP54-211ENST00000474929 CBFA2T3O75081 653 aa8.92□□□□□ -0.98
USP54-211ENST00000474929 MOSPD3O75425 235 aa8.92□□□□□ -0.98
USP54-211ENST00000474929 GJB3O75712 270 aa8.92□□□□□ -0.98
USP54-211ENST00000474929 DKK1O94907 266 aa8.92□□□□□ -0.98
USP54-211ENST00000474929 EGFP01133 1207 aa8.92□□□□□ -0.98
USP54-211ENST00000474929 ZNF883P0CG24 379 aa8.92□□□□□ -0.98
USP54-211ENST00000474929 TMPRSS3P57727 454 aa8.92□□□□□ -0.98
USP54-211ENST00000474929 CXADRP78310 365 aa8.92□□□□□ -0.98
USP54-211ENST00000474929 RUNX3Q13761 415 aa8.92□□□□□ -0.98
USP54-211ENST00000474929 SMAD1Q15797 465 aaKnown RBP8.92□□□□□ -0.98
USP54-211ENST00000474929 HSF5Q4G112 596 aaPredicted RBP8.92□□□□□ -0.98
USP54-211ENST00000474929 PCSK4Q6UW60 755 aa8.92□□□□□ -0.98
USP54-211ENST00000474929 ARMCX6Q7L4S7 300 aa8.92□□□□□ -0.98
USP54-211ENST00000474929 PLEKHM2Q8IWE5 1019 aa8.92□□□□□ -0.98
USP54-211ENST00000474929 SHKBP1Q8TBC3 707 aa8.92□□□□□ -0.98
USP54-211ENST00000474929 SPIRE2Q8WWL2 714 aa8.92□□□□□ -0.98
USP54-211ENST00000474929 TCP11Q8WWU5 503 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms