RNA–Protein interactions for RNA: ENST00000474644.1

COL1A1-204, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 3

Gene COL1A1, Length 640 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-204ENST00000474644 ITGA11Q9UKX5 1188 aa17.02■□□□□ 0.32
COL1A1-204ENST00000474644 PCDHGC5Q9Y5F6 944 aa17.02■□□□□ 0.32
COL1A1-204ENST00000474644 MTCH2Q9Y6C9 303 aa17.02■□□□□ 0.32
COL1A1-204ENST00000474644 TRANK1O15050 2925 aa17.02■□□□□ 0.31
COL1A1-204ENST00000474644 PIRO00625 290 aa17.01■□□□□ 0.31
COL1A1-204ENST00000474644 ITGB3P05106 788 aa17.01■□□□□ 0.31
COL1A1-204ENST00000474644 KRT13P13646 458 aa17.01■□□□□ 0.31
COL1A1-204ENST00000474644 POU3F3P20264 500 aaPredicted RBP17.01■□□□□ 0.31
COL1A1-204ENST00000474644 IGFBP4P22692 258 aa17.01■□□□□ 0.31
COL1A1-204ENST00000474644 ERCC5P28715 1186 aaPredicted RBP17.01■□□□□ 0.31
COL1A1-204ENST00000474644 POLR2BP30876 1174 aaKnown RBP17.01■□□□□ 0.31
COL1A1-204ENST00000474644 BRCC3P46736 316 aa17.01■□□□□ 0.31
COL1A1-204ENST00000474644 VAMP7P51809 220 aa17.01■□□□□ 0.31
COL1A1-204ENST00000474644 DUOXA2Q1HG44 320 aa17.01■□□□□ 0.31
COL1A1-204ENST00000474644 C1orf220Q5T0J3 134 aa17.01■□□□□ 0.31
COL1A1-204ENST00000474644 C11orf57Q6ZUT1 292 aaPredicted RBP17.01■□□□□ 0.31
COL1A1-204ENST00000474644 TAS1R1Q7RTX1 841 aa17.01■□□□□ 0.31
COL1A1-204ENST00000474644 B3GALT6Q96L58 329 aa17.01■□□□□ 0.31
COL1A1-204ENST00000474644 ENTPD7Q9NQZ7 604 aa17.01■□□□□ 0.31
COL1A1-204ENST00000474644 ANO10Q9NW15 660 aa17.01■□□□□ 0.31
COL1A1-204ENST00000474644 LMCD1Q9NZU5 365 aa17.01■□□□□ 0.31
COL1A1-204ENST00000474644 SIX4Q9UIU6 781 aa17.01■□□□□ 0.31
COL1A1-204ENST00000474644 STXBP5LQ9Y2K9 1186 aa17.01■□□□□ 0.31
COL1A1-204ENST00000474644 NUB1Q9Y5A7 615 aa17.01■□□□□ 0.31
COL1A1-204ENST00000474644 EYSQ5T1H1 3165 aa17.01■□□□□ 0.31
COL1A1-204ENST00000474644 I3L4J1 428 aa17■□□□□ 0.31
COL1A1-204ENST00000474644 TRIM49P0CI25 452 aa17■□□□□ 0.31
COL1A1-204ENST00000474644 TRIM49CP0CI26 452 aa17■□□□□ 0.31
COL1A1-204ENST00000474644 AARSP49588 968 aaKnown RBP eCLIP17■□□□□ 0.31
COL1A1-204ENST00000474644 MCCD1P59942 119 aaPredicted RBP17■□□□□ 0.31
COL1A1-204ENST00000474644 TYRO3Q06418 890 aa17■□□□□ 0.31
COL1A1-204ENST00000474644 ENPEPQ07075 957 aa17■□□□□ 0.31
COL1A1-204ENST00000474644 ELAVL2Q12926 359 aaKnown RBP17■□□□□ 0.31
COL1A1-204ENST00000474644 CT47A1Q5JQC4 288 aaPredicted RBP17■□□□□ 0.31
COL1A1-204ENST00000474644 PLPP4Q5VZY2 271 aa17■□□□□ 0.31
COL1A1-204ENST00000474644 SCARA3Q6AZY7 606 aa17■□□□□ 0.31
COL1A1-204ENST00000474644 TRAPPC11Q7Z392 1133 aa17■□□□□ 0.31
COL1A1-204ENST00000474644 FILIP1Q7Z7B0 1213 aa17■□□□□ 0.31
COL1A1-204ENST00000474644 USP37Q86T82 979 aa17■□□□□ 0.31
COL1A1-204ENST00000474644 ZNF516Q92618 1163 aa17■□□□□ 0.31
COL1A1-204ENST00000474644 PRUNE2Q8WUY3 3088 aa16.99■□□□□ 0.31
COL1A1-204ENST00000474644 SPTLC1O15269 473 aa16.99■□□□□ 0.31
COL1A1-204ENST00000474644 TRAPPC3O43617 180 aa16.99■□□□□ 0.31
COL1A1-204ENST00000474644 URODP06132 367 aa16.99■□□□□ 0.31
COL1A1-204ENST00000474644 CTSAP10619 480 aa16.99■□□□□ 0.31
COL1A1-204ENST00000474644 GLUD2P49448 558 aa16.99■□□□□ 0.31
COL1A1-204ENST00000474644 TAF6P49848 677 aa16.99■□□□□ 0.31
COL1A1-204ENST00000474644 AP3M2P53677 418 aa16.99■□□□□ 0.31
COL1A1-204ENST00000474644 SMC1AQ14683 1233 aaKnown RBP16.99■□□□□ 0.31
COL1A1-204ENST00000474644 PTPN14Q15678 1187 aa16.99■□□□□ 0.31
COL1A1-204ENST00000474644 USP41Q3LFD5 358 aa16.99■□□□□ 0.31
COL1A1-204ENST00000474644 TIGD5Q53EQ6 642 aa16.99■□□□□ 0.31
COL1A1-204ENST00000474644 RTP2Q5QGT7 225 aa16.99■□□□□ 0.31
COL1A1-204ENST00000474644 FAM171A1Q5VUB5 890 aa16.99■□□□□ 0.31
COL1A1-204ENST00000474644 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.99■□□□□ 0.31
COL1A1-204ENST00000474644 TMC7Q7Z402 723 aa16.99■□□□□ 0.31
COL1A1-204ENST00000474644 LRRC52Q8N7C0 313 aa16.99■□□□□ 0.31
COL1A1-204ENST00000474644 AUTS2Q8WXX7 1259 aa16.99■□□□□ 0.31
COL1A1-204ENST00000474644 SUSD3Q96L08 255 aa16.99■□□□□ 0.31
COL1A1-204ENST00000474644 ZNF560Q96MR9 790 aa16.99■□□□□ 0.31
COL1A1-204ENST00000474644 SRRTQ9BXP5 876 aaKnown RBP16.99■□□□□ 0.31
COL1A1-204ENST00000474644 NGRNQ9NPE2 291 aaKnown RBP16.99■□□□□ 0.31
COL1A1-204ENST00000474644 CHST7Q9NS84 486 aa16.99■□□□□ 0.31
COL1A1-204ENST00000474644 ARMCX3Q9UH62 379 aaPredicted RBP16.99■□□□□ 0.31
COL1A1-204ENST00000474644 AGAP1Q9UPQ3 857 aa16.99■□□□□ 0.31
COL1A1-204ENST00000474644 ATG2AQ2TAZ0 1938 aa16.99■□□□□ 0.31
COL1A1-204ENST00000474644 SYCE3A1L190 88 aa16.98■□□□□ 0.31
COL1A1-204ENST00000474644 HIDE1A8MVS5 230 aa16.98■□□□□ 0.31
COL1A1-204ENST00000474644 IKBKBO14920 756 aa16.98■□□□□ 0.31
COL1A1-204ENST00000474644 LETM1O95202 739 aaPredicted RBP16.98■□□□□ 0.31
COL1A1-204ENST00000474644 KRT19P08727 400 aa16.98■□□□□ 0.31
COL1A1-204ENST00000474644 FGFR3P22607 806 aa16.98■□□□□ 0.31
COL1A1-204ENST00000474644 TKTP29401 623 aaKnown RBP16.98■□□□□ 0.31
COL1A1-204ENST00000474644 PNPLA4P41247 253 aa16.98■□□□□ 0.31
COL1A1-204ENST00000474644 LILRA4P59901 499 aa16.98■□□□□ 0.31
COL1A1-204ENST00000474644 RBP5P82980 135 aa16.98■□□□□ 0.31
COL1A1-204ENST00000474644 DSG1Q02413 1049 aa16.98■□□□□ 0.31
COL1A1-204ENST00000474644 PPP3CAQ08209 521 aa16.98■□□□□ 0.31
COL1A1-204ENST00000474644 CCDC40Q4G0X9 1142 aa16.98■□□□□ 0.31
COL1A1-204ENST00000474644 DCAF17Q5H9S7 520 aaPredicted RBP16.98■□□□□ 0.31
COL1A1-204ENST00000474644 TDRD10Q5VZ19 366 aaKnown RBP16.98■□□□□ 0.31
COL1A1-204ENST00000474644 PDE12Q6L8Q7 609 aaKnown RBP16.98■□□□□ 0.31
COL1A1-204ENST00000474644 FRMD5Q7Z6J6 570 aa16.98■□□□□ 0.31
COL1A1-204ENST00000474644 MICAL1Q8TDZ2 1067 aa16.98■□□□□ 0.31
COL1A1-204ENST00000474644 DNAJC25Q9H1X3 360 aa16.98■□□□□ 0.31
COL1A1-204ENST00000474644 NSUN3Q9H649 340 aaKnown RBP16.98■□□□□ 0.31
COL1A1-204ENST00000474644 METTL14Q9HCE5 456 aaKnown RBP16.98■□□□□ 0.31
COL1A1-204ENST00000474644 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.97■□□□□ 0.31
COL1A1-204ENST00000474644 M0QZQ0 153 aa16.97■□□□□ 0.31
COL1A1-204ENST00000474644 DLL1O00548 723 aa16.97■□□□□ 0.31
COL1A1-204ENST00000474644 FGFR1OPO95684 399 aaKnown RBP16.97■□□□□ 0.31
COL1A1-204ENST00000474644 GNA14O95837 355 aa16.97■□□□□ 0.31
COL1A1-204ENST00000474644 C4BPAP04003 597 aaKnown RBP16.97■□□□□ 0.31
COL1A1-204ENST00000474644 PAX3P23760 479 aa16.97■□□□□ 0.31
COL1A1-204ENST00000474644 CA8P35219 290 aa16.97■□□□□ 0.31
COL1A1-204ENST00000474644 GCLMP48507 274 aa16.97■□□□□ 0.31
COL1A1-204ENST00000474644 MARSP56192 900 aaKnown RBP16.97■□□□□ 0.31
COL1A1-204ENST00000474644 BIRC3Q13489 604 aa16.97■□□□□ 0.31
COL1A1-204ENST00000474644 ZSCAN23Q3MJ62 389 aa16.97■□□□□ 0.31
COL1A1-204ENST00000474644 ZACNQ401N2 412 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms