RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 CCDC105Q8IYK2 499 aa20.48■□□□□ 0.87
CCDC88B-206ENST00000473405 LARP4BQ92615 738 aaKnown RBP20.48■□□□□ 0.87
CCDC88B-206ENST00000473405 CCSER1Q9C0I3 900 aa20.48■□□□□ 0.87
CCDC88B-206ENST00000473405 KCNH3Q9ULD8 1083 aa20.48■□□□□ 0.87
CCDC88B-206ENST00000473405 FAM186AA6NE01 2351 aa20.48■□□□□ 0.87
CCDC88B-206ENST00000473405 A0A0B4J269 797 aa20.47■□□□□ 0.87
CCDC88B-206ENST00000473405 H7C4K7 107 aa20.47■□□□□ 0.87
CCDC88B-206ENST00000473405 TRAK2O60296 914 aa20.47■□□□□ 0.87
CCDC88B-206ENST00000473405 SEC24AO95486 1093 aa20.47■□□□□ 0.87
CCDC88B-206ENST00000473405 PDCP20941 246 aa20.47■□□□□ 0.87
CCDC88B-206ENST00000473405 RESTQ13127 1097 aa20.47■□□□□ 0.87
CCDC88B-206ENST00000473405 CTXN3Q4LDR2 81 aa20.47■□□□□ 0.87
CCDC88B-206ENST00000473405 TCEAL8Q8IYN2 117 aa20.47■□□□□ 0.87
CCDC88B-206ENST00000473405 RASSF8Q8NHQ8 419 aa20.47■□□□□ 0.87
CCDC88B-206ENST00000473405 ING5Q8WYH8 240 aa20.47■□□□□ 0.87
CCDC88B-206ENST00000473405 DDX12PQ92771 950 aa20.47■□□□□ 0.87
CCDC88B-206ENST00000473405 KIF12Q96FN5 646 aa20.47■□□□□ 0.87
CCDC88B-206ENST00000473405 EPSTI1Q96J88 318 aa20.47■□□□□ 0.87
CCDC88B-206ENST00000473405 RTP3Q9BQQ7 232 aa20.47■□□□□ 0.87
CCDC88B-206ENST00000473405 TBC1D17Q9HA65 648 aa20.47■□□□□ 0.87
CCDC88B-206ENST00000473405 ARHGEF3Q9NR81 526 aa20.47■□□□□ 0.87
CCDC88B-206ENST00000473405 FBXO2Q9UK22 296 aaPredicted RBP20.47■□□□□ 0.87
CCDC88B-206ENST00000473405 LACTBL1A8MY62 500 aa20.46■□□□□ 0.87
CCDC88B-206ENST00000473405 PROB1E7EW31 1015 aa20.46■□□□□ 0.87
CCDC88B-206ENST00000473405 M0QZQ0 153 aa20.46■□□□□ 0.87
CCDC88B-206ENST00000473405 OGTO15294 1046 aa20.46■□□□□ 0.87
CCDC88B-206ENST00000473405 TBCAO75347 108 aaKnown RBP20.46■□□□□ 0.87
CCDC88B-206ENST00000473405 KRT18P05783 430 aaKnown RBP20.46■□□□□ 0.87
CCDC88B-206ENST00000473405 ADRB2P07550 413 aa20.46■□□□□ 0.87
CCDC88B-206ENST00000473405 RHOP08100 348 aa20.46■□□□□ 0.87
CCDC88B-206ENST00000473405 NMT1P30419 496 aaKnown RBP20.46■□□□□ 0.87
CCDC88B-206ENST00000473405 AARSP49588 968 aaKnown RBP eCLIP20.46■□□□□ 0.87
CCDC88B-206ENST00000473405 ARPP19P56211 112 aa20.46■□□□□ 0.87
CCDC88B-206ENST00000473405 PPP2R3AQ06190 1150 aa20.46■□□□□ 0.87
CCDC88B-206ENST00000473405 SPECC1Q5M775 1068 aa20.46■□□□□ 0.87
CCDC88B-206ENST00000473405 POTEHQ6S545 545 aa20.46■□□□□ 0.87
CCDC88B-206ENST00000473405 MTSS1LQ765P7 747 aa20.46■□□□□ 0.87
CCDC88B-206ENST00000473405 MAP4K3Q8IVH8 894 aa20.46■□□□□ 0.87
CCDC88B-206ENST00000473405 AVENQ9NQS1 362 aaPredicted RBP20.46■□□□□ 0.87
CCDC88B-206ENST00000473405 PCDHB8Q9UN66 801 aa20.46■□□□□ 0.87
CCDC88B-206ENST00000473405 INSL5Q9Y5Q6 135 aa20.46■□□□□ 0.87
CCDC88B-206ENST00000473405 COL4A2P08572 1712 aa20.45■□□□□ 0.86
CCDC88B-206ENST00000473405 DCHS1Q96JQ0 3298 aa20.45■□□□□ 0.86
CCDC88B-206ENST00000473405 SCN1AP35498 2009 aa20.45■□□□□ 0.86
CCDC88B-206ENST00000473405 PRRG1O14668 218 aa20.45■□□□□ 0.86
CCDC88B-206ENST00000473405 CYP3A5P20815 502 aa20.45■□□□□ 0.86
CCDC88B-206ENST00000473405 SYT1P21579 422 aa20.45■□□□□ 0.86
CCDC88B-206ENST00000473405 MARCKSP29966 332 aaPredicted RBP20.45■□□□□ 0.86
CCDC88B-206ENST00000473405 NBL1P41271 181 aa20.45■□□□□ 0.86
CCDC88B-206ENST00000473405 GUCY2FP51841 1108 aa20.45■□□□□ 0.86
CCDC88B-206ENST00000473405 GPC5P78333 572 aa20.45■□□□□ 0.86
CCDC88B-206ENST00000473405 GTF2BQ00403 316 aa20.45■□□□□ 0.86
CCDC88B-206ENST00000473405 KYAT1Q16773 422 aa20.45■□□□□ 0.86
CCDC88B-206ENST00000473405 TPGS2Q68CL5 300 aa20.45■□□□□ 0.86
CCDC88B-206ENST00000473405 ZNF280DQ6N043 979 aa20.45■□□□□ 0.86
CCDC88B-206ENST00000473405 FAM173BQ6P4H8 233 aa20.45■□□□□ 0.86
CCDC88B-206ENST00000473405 DTWD2Q8NBA8 298 aa20.45■□□□□ 0.86
CCDC88B-206ENST00000473405 APPL2Q8NEU8 664 aa20.45■□□□□ 0.86
CCDC88B-206ENST00000473405 KXD1Q9BQD3 176 aa20.45■□□□□ 0.86
CCDC88B-206ENST00000473405 ZHX3Q9H4I2 956 aa20.45■□□□□ 0.86
CCDC88B-206ENST00000473405 CYP4F11Q9HBI6 524 aa20.45■□□□□ 0.86
CCDC88B-206ENST00000473405 UBQLN1Q9UMX0 589 aaKnown RBP20.45■□□□□ 0.86
CCDC88B-206ENST00000473405 MRPS23Q9Y3D9 190 aaKnown RBP20.45■□□□□ 0.86
CCDC88B-206ENST00000473405 PATJQ8NI35 1801 aa20.45■□□□□ 0.86
CCDC88B-206ENST00000473405 TISP43B9A030 160 aa20.44■□□□□ 0.86
CCDC88B-206ENST00000473405 NRG2O14511 850 aaPredicted RBP20.44■□□□□ 0.86
CCDC88B-206ENST00000473405 PPEF2O14830 753 aa20.44■□□□□ 0.86
CCDC88B-206ENST00000473405 GFRA3O60609 400 aa20.44■□□□□ 0.86
CCDC88B-206ENST00000473405 LRG1P02750 347 aa20.44■□□□□ 0.86
CCDC88B-206ENST00000473405 CEBPBP17676 345 aa20.44■□□□□ 0.86
CCDC88B-206ENST00000473405 DDIT3P35638 169 aa20.44■□□□□ 0.86
CCDC88B-206ENST00000473405 ZC2HC1CQ53FD0 456 aaPredicted RBP20.44■□□□□ 0.86
CCDC88B-206ENST00000473405 PRSS36Q5K4E3 855 aa20.44■□□□□ 0.86
CCDC88B-206ENST00000473405 PHLDB3Q6NSJ2 640 aa20.44■□□□□ 0.86
CCDC88B-206ENST00000473405 MSTO1Q9BUK6 570 aa20.44■□□□□ 0.86
CCDC88B-206ENST00000473405 ST6GALNAC4Q9H4F1 302 aa20.44■□□□□ 0.86
CCDC88B-206ENST00000473405 CPSF3Q9UKF6 684 aaKnown RBP20.44■□□□□ 0.86
CCDC88B-206ENST00000473405 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.44■□□□□ 0.86
CCDC88B-206ENST00000473405 TCHHQ07283 1943 aa20.44■□□□□ 0.86
CCDC88B-206ENST00000473405 ANKRD63C9JTQ0 380 aa20.43■□□□□ 0.86
CCDC88B-206ENST00000473405 VNN2O95498 520 aa20.43■□□□□ 0.86
CCDC88B-206ENST00000473405 ELF1P32519 619 aa20.43■□□□□ 0.86
CCDC88B-206ENST00000473405 ADCY1Q08828 1119 aa20.43■□□□□ 0.86
CCDC88B-206ENST00000473405 BEST2Q8NFU1 509 aa20.43■□□□□ 0.86
CCDC88B-206ENST00000473405 CLIC6Q96NY7 704 aa20.43■□□□□ 0.86
CCDC88B-206ENST00000473405 CORO1BQ9BR76 489 aa20.43■□□□□ 0.86
CCDC88B-206ENST00000473405 IKZF4Q9H2S9 585 aa20.43■□□□□ 0.86
CCDC88B-206ENST00000473405 RPF1Q9H9Y2 349 aaKnown RBP20.43■□□□□ 0.86
CCDC88B-206ENST00000473405 GDE1Q9NZC3 331 aa20.43■□□□□ 0.86
CCDC88B-206ENST00000473405 DLGAP2Q9P1A6 1054 aa20.43■□□□□ 0.86
CCDC88B-206ENST00000473405 STK17AQ9UEE5 414 aa20.43■□□□□ 0.86
CCDC88B-206ENST00000473405 AFF4Q9UHB7 1163 aaKnown RBP20.43■□□□□ 0.86
CCDC88B-206ENST00000473405 TIMM13Q9Y5L4 95 aaPredicted RBP20.43■□□□□ 0.86
CCDC88B-206ENST00000473405 SRPRBQ9Y5M8 271 aaKnown RBP20.43■□□□□ 0.86
CCDC88B-206ENST00000473405 STK25O00506 426 aa20.42■□□□□ 0.86
CCDC88B-206ENST00000473405 OAZ2O95190 189 aa20.42■□□□□ 0.86
CCDC88B-206ENST00000473405 NFICP08651 508 aa20.42■□□□□ 0.86
CCDC88B-206ENST00000473405 PTPN2P17706 415 aa20.42■□□□□ 0.86
CCDC88B-206ENST00000473405 RFX1P22670 979 aa20.42■□□□□ 0.86
CCDC88B-206ENST00000473405 CCR2P41597 374 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms