RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 PTK6Q13882 451 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 SVOPQ8N4V2 548 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 DIS3LQ8TF46 1054 aaKnown RBP13.93□□□□□ -0.18
COL6A3-209ENST00000472056 TLR7Q9NYK1 1049 aaKnown RBP13.93□□□□□ -0.18
COL6A3-209ENST00000472056 TMEM120BA0PK00 339 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 DUOXA2Q1HG44 320 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 PIGOQ8TEQ8 1089 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 SYNJ2BP-COX16A0A087WUM0 186 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 NNMTP40261 264 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 RAD51Q06609 339 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 RWDD4Q6NW29 188 aaKnown RBP13.93□□□□□ -0.18
COL6A3-209ENST00000472056 SFR1Q86XK3 245 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 PABPC3Q9H361 631 aaKnown RBP13.93□□□□□ -0.18
COL6A3-209ENST00000472056 L2HGDHQ9H9P8 463 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 COX16Q9P0S2 106 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 ZC3H7BQ9UGR2 993 aaKnown RBP13.93□□□□□ -0.18
COL6A3-209ENST00000472056 THRAP10827 490 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 SERPINB8P50452 374 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 LRRC49Q8IUZ0 686 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 TUFT1Q9NNX1 390 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 M0R2C6 588 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 PSTPIP1O43586 416 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 GUCA1CO95843 209 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 SCTRP47872 440 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 C16orf72Q14CZ0 275 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 EIF1ADQ8N9N8 165 aaKnown RBP13.93□□□□□ -0.18
COL6A3-209ENST00000472056 MED14O60244 1454 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 IL6STP40189 918 aaPredicted RBP13.93□□□□□ -0.18
COL6A3-209ENST00000472056 IL12RB1P42701 662 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 DRAP1Q14919 205 aaPredicted RBP13.93□□□□□ -0.18
COL6A3-209ENST00000472056 R3HDM1Q15032 1099 aaKnown RBP13.93□□□□□ -0.18
COL6A3-209ENST00000472056 SRGAP2O75044 1071 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 NR1I3Q14994 352 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 NAB2Q15742 525 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 SPANXN2Q5MJ10 180 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 CCDC28BQ9BUN5 200 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 BDH2Q9BUT1 245 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 DDX47Q9H0S4 455 aaKnown RBP13.93□□□□□ -0.18
COL6A3-209ENST00000472056 NEU2Q9Y3R4 380 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 PCDHB6Q9Y5E3 794 aa13.93□□□□□ -0.18
COL6A3-209ENST00000472056 PDE4DIPQ5VU43 2346 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 NBPF26B4DH59 902 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 CBFA2T3O75081 653 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 BTDP43251 543 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 GEMIN4P57678 1058 aaKnown RBP13.92□□□□□ -0.18
COL6A3-209ENST00000472056 TUBA4AP68366 448 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 ZNF544Q6NX49 715 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 YTHDF3Q7Z739 585 aaKnown RBP13.92□□□□□ -0.18
COL6A3-209ENST00000472056 NBPF15Q8N660 670 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 ILKAPQ9H0C8 392 aaPredicted RBP13.92□□□□□ -0.18
COL6A3-209ENST00000472056 PNMA3Q9UL41 463 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 POU5F1BQ06416 359 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 KIF22Q14807 665 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 PPP2R3CQ969Q6 453 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 RSAD1Q9HA92 442 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 CLIC2O15247 247 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 HUS1O60921 280 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 RAD23AP54725 363 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 PDAP1Q13442 181 aaKnown RBP13.92□□□□□ -0.18
COL6A3-209ENST00000472056 FAM83EQ2M2I3 478 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 KRT27Q7Z3Y8 459 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 SGMS1Q86VZ5 419 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 SCUBE1Q8IWY4 988 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 NXF1Q9UBU9 619 aaKnown RBP13.92□□□□□ -0.18
COL6A3-209ENST00000472056 C3orf70A6NLC5 250 aaPredicted RBP13.92□□□□□ -0.18
COL6A3-209ENST00000472056 PRELPP51888 382 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 COASYQ13057 564 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 PDXDC2PQ6P474 469 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 KCNV1Q6PIU1 500 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 TMEM270Q6UE05 265 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 CRELD2Q6UXH1 353 aaPredicted RBP13.92□□□□□ -0.18
COL6A3-209ENST00000472056 FAM45AQ8TCE6 357 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 KLHL25Q9H0H3 589 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 ARHGEF3Q9NR81 526 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 RABGEF1Q9UJ41 708 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 BCORL1Q5H9F3 1711 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 CES2O00748 559 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 TSC22D1Q15714 1073 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 CDC26Q8NHZ8 85 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 HDAC6Q9UBN7 1215 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 KCNA2P16389 499 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 TGFBR2P37173 567 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 EFNA5P52803 228 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 KCNK10P57789 538 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 TCP10Q12799 353 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 ATAD3BQ5T9A4 648 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 BBS2Q9BXC9 721 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 PIGUQ9H490 435 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 ERAP1Q9NZ08 941 aa13.92□□□□□ -0.18
COL6A3-209ENST00000472056 ZBTB5O15062 677 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 MTRF1O75570 445 aaKnown RBP13.91□□□□□ -0.18
COL6A3-209ENST00000472056 BCL10O95999 233 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 MRPL4Q9BYD3 311 aaKnown RBP13.91□□□□□ -0.18
COL6A3-209ENST00000472056 AP5M1Q9H0R1 490 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 THRAP3Q9Y2W1 955 aaKnown RBP13.91□□□□□ -0.18
COL6A3-209ENST00000472056 MUTP22033 750 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 GNL1P36915 607 aaPredicted RBP13.91□□□□□ -0.18
COL6A3-209ENST00000472056 C11orf88Q6PI97 169 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 SCFD2Q8WU76 684 aa13.91□□□□□ -0.18
COL6A3-209ENST00000472056 EGFL8Q99944 293 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms