RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	METRNL	Q641Q3	311 aa		4.79	□□□□□ -1.64
PTCD3-209	ENST00000472044	SGMS1	Q86VZ5	419 aa		4.79	□□□□□ -1.64
PTCD3-209	ENST00000472044	GSPT2	Q8IYD1	628 aa	Known RBP	4.79	□□□□□ -1.64
PTCD3-209	ENST00000472044	FITM2	Q8N6M3	262 aa		4.79	□□□□□ -1.64
PTCD3-209	ENST00000472044	AOPEP	Q8N6M6	819 aa		4.79	□□□□□ -1.64
PTCD3-209	ENST00000472044	TTC9B	Q8N6N2	239 aa		4.79	□□□□□ -1.64
PTCD3-209	ENST00000472044	CXorf38	Q8TB03	319 aa		4.79	□□□□□ -1.64
PTCD3-209	ENST00000472044	KBTBD7	Q8WVZ9	684 aa		4.79	□□□□□ -1.64
PTCD3-209	ENST00000472044	ATXN2L	Q8WWM7	1075 aa	Known RBP	4.79	□□□□□ -1.64
PTCD3-209	ENST00000472044	C20orf173	Q96LM9	149 aa		4.79	□□□□□ -1.64
PTCD3-209	ENST00000472044	WWC2-AS2	Q96NR7	200 aa		4.79	□□□□□ -1.64
PTCD3-209	ENST00000472044	DPH1	Q9BZG8	443 aa		4.79	□□□□□ -1.64
PTCD3-209	ENST00000472044	GSTO2	Q9H4Y5	243 aa		4.79	□□□□□ -1.64
PTCD3-209	ENST00000472044	BRD9	Q9H8M2	597 aa		4.79	□□□□□ -1.64
PTCD3-209	ENST00000472044	RSAD1	Q9HA92	442 aa		4.79	□□□□□ -1.64
PTCD3-209	ENST00000472044	GPR35	Q9HC97	309 aa		4.79	□□□□□ -1.64
PTCD3-209	ENST00000472044	SPON1	Q9HCB6	807 aa		4.79	□□□□□ -1.64
PTCD3-209	ENST00000472044	STAP2	Q9UGK3	403 aa		4.79	□□□□□ -1.64
PTCD3-209	ENST00000472044	PCDHA6	Q9UN73	950 aa		4.79	□□□□□ -1.64
PTCD3-209	ENST00000472044	KRTAP23-1	A1A580	65 aa		4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	KLRG2	A4D1S0	409 aa	Predicted RBP	4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	CAPN14	A8MX76	684 aa		4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	GOLGA6L6	A8MZA4	724 aa		4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	FOXN3	O00409	490 aa	Predicted RBP	4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	PQBP1	O60828	265 aa	Known RBP	4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	AHSG	P02765	367 aa		4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	TH	P07101	528 aa		4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	HDC	P19113	662 aa		4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	EN2	P19622	333 aa	Predicted RBP	4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	TM4SF4	P48230	202 aa		4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	SOX8	P57073	446 aa		4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	ICAM4	Q14773	271 aa		4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	HS1BP3	Q53T59	392 aa		4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	UTP14C	Q5TAP6	766 aa	Known RBP	4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	IL31	Q6EBC2	164 aa		4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	SYT12	Q8IV01	421 aa		4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	ZFPM1	Q8IX07	1006 aa		4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	ZNF808	Q8N4W9	903 aa	Predicted RBP	4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	OR10H5	Q8NGA6	315 aa		4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	NUP133	Q8WUM0	1156 aa		4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	DDX17	Q92841	729 aa	Known RBP	4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	TNPO1	Q92973	898 aa	Known RBP	4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	PHKB	Q93100	1093 aa		4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	SCAMP4	Q969E2	229 aa		4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	STRBP	Q96SI9	672 aa	Known RBP	4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	MNT	Q99583	582 aa		4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	TRIM54	Q9BYV2	358 aa		4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	KLHL11	Q9NVR0	708 aa		4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	POGK	Q9P215	609 aa		4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	CPA4	Q9UI42	421 aa		4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	PCDHGB6	Q9Y5F9	930 aa		4.78	□□□□□ -1.64
PTCD3-209	ENST00000472044	USP19	O94966	1318 aa		4.77	□□□□□ -1.65
PTCD3-209	ENST00000472044	XDH	P47989	1333 aa		4.77	□□□□□ -1.65
PTCD3-209	ENST00000472044	DIRC3	C9JPN6	131 aa		4.77	□□□□□ -1.65
PTCD3-209	ENST00000472044	GJB1	P08034	283 aa		4.77	□□□□□ -1.65
PTCD3-209	ENST00000472044	KIT	P10721	976 aa		4.77	□□□□□ -1.65
PTCD3-209	ENST00000472044	RARB	P10826	455 aa		4.77	□□□□□ -1.65
PTCD3-209	ENST00000472044	HK1	P19367	917 aa		4.77	□□□□□ -1.65
PTCD3-209	ENST00000472044	ACO1	P21399	889 aa	Known RBP	4.77	□□□□□ -1.65
PTCD3-209	ENST00000472044	GCSH	P23434	173 aa		4.77	□□□□□ -1.65
PTCD3-209	ENST00000472044	NEK3	P51956	506 aa		4.77	□□□□□ -1.65
PTCD3-209	ENST00000472044	AK2	P54819	239 aa		4.77	□□□□□ -1.65
PTCD3-209	ENST00000472044	EXOSC9	Q06265	439 aa	Known RBP	4.77	□□□□□ -1.65
PTCD3-209	ENST00000472044	TCF15	Q12870	199 aa		4.77	□□□□□ -1.65
PTCD3-209	ENST00000472044	NFIX	Q14938	502 aa		4.77	□□□□□ -1.65
PTCD3-209	ENST00000472044	CNGA2	Q16280	664 aa		4.77	□□□□□ -1.65
PTCD3-209	ENST00000472044	MED25	Q71SY5	747 aa		4.77	□□□□□ -1.65
PTCD3-209	ENST00000472044	MB21D1	Q8N884	522 aa		4.77	□□□□□ -1.65
PTCD3-209	ENST00000472044	RNF169	Q8NCN4	708 aa		4.77	□□□□□ -1.65
PTCD3-209	ENST00000472044	MSLNL	Q96KJ4	702 aa		4.77	□□□□□ -1.65
PTCD3-209	ENST00000472044	KIAA1586	Q9HCI6	787 aa		4.77	□□□□□ -1.65
PTCD3-209	ENST00000472044	ST6GALNAC1	Q9NSC7	600 aa	Predicted RBP	4.77	□□□□□ -1.65
PTCD3-209	ENST00000472044	RGS17	Q9UGC6	210 aa	Predicted RBP	4.77	□□□□□ -1.65
PTCD3-209	ENST00000472044	PHTF1	Q9UMS5	762 aa		4.77	□□□□□ -1.65
PTCD3-209	ENST00000472044	CDHR4	A6H8M9	788 aa		4.76	□□□□□ -1.65
PTCD3-209	ENST00000472044	TBX3	O15119	743 aa		4.76	□□□□□ -1.65
PTCD3-209	ENST00000472044	AGFG2	O95081	481 aa		4.76	□□□□□ -1.65
PTCD3-209	ENST00000472044	CHEK2	O96017	543 aa		4.76	□□□□□ -1.65
PTCD3-209	ENST00000472044	CKB	P12277	381 aa		4.76	□□□□□ -1.65
PTCD3-209	ENST00000472044	SLC6A2	P23975	617 aa		4.76	□□□□□ -1.65
PTCD3-209	ENST00000472044	SLC7A1	P30825	629 aa		4.76	□□□□□ -1.65
PTCD3-209	ENST00000472044	HIBADH	P31937	336 aa	Known RBP	4.76	□□□□□ -1.65
PTCD3-209	ENST00000472044	HTR3A	P46098	478 aa		4.76	□□□□□ -1.65
PTCD3-209	ENST00000472044	MAN2A2	P49641	1150 aa		4.76	□□□□□ -1.65
PTCD3-209	ENST00000472044	ALDH5A1	P51649	535 aa	Predicted RBP	4.76	□□□□□ -1.65
PTCD3-209	ENST00000472044	CHN2	P52757	468 aa		4.76	□□□□□ -1.65
PTCD3-209	ENST00000472044	NOMO3	P69849	1222 aa		4.76	□□□□□ -1.65
PTCD3-209	ENST00000472044	FMO1	Q01740	532 aa		4.76	□□□□□ -1.65
PTCD3-209	ENST00000472044	HABP2	Q14520	560 aa	Predicted RBP	4.76	□□□□□ -1.65
PTCD3-209	ENST00000472044	FBLN7	Q53RD9	439 aa		4.76	□□□□□ -1.65
PTCD3-209	ENST00000472044	FAM102A	Q5T9C2	384 aa	Predicted RBP	4.76	□□□□□ -1.65
PTCD3-209	ENST00000472044	AGAP9	Q5VTM2	703 aa		4.76	□□□□□ -1.65
PTCD3-209	ENST00000472044		Q6ZRM9	215 aa		4.76	□□□□□ -1.65
PTCD3-209	ENST00000472044	RHOT2	Q8IXI1	618 aa		4.76	□□□□□ -1.65
PTCD3-209	ENST00000472044	CELF5	Q8N6W0	485 aa	Known RBP	4.76	□□□□□ -1.65
PTCD3-209	ENST00000472044	GJA10	Q969M2	543 aa		4.76	□□□□□ -1.65
PTCD3-209	ENST00000472044	NMD3	Q96D46	503 aa	Known RBP	4.76	□□□□□ -1.65
PTCD3-209	ENST00000472044	ZC3H10	Q96K80	434 aa	Known RBP	4.76	□□□□□ -1.65
PTCD3-209	ENST00000472044	DCLRE1C	Q96SD1	692 aa	Known RBP	4.76	□□□□□ -1.65

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