RNA–Protein interactions for RNA: ENST00000470652.1

COL9A1-206, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 5

Gene COL9A1, Length 531 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-206ENST00000470652 CLIP3Q96DZ5 547 aa5.37□□□□□ -1.55
COL9A1-206ENST00000470652 SMAD5Q99717 465 aaKnown RBP5.37□□□□□ -1.55
COL9A1-206ENST00000470652 NRDE2Q9H7Z3 1164 aa5.37□□□□□ -1.55
COL9A1-206ENST00000470652 GPRC5BQ9NZH0 403 aa5.37□□□□□ -1.55
COL9A1-206ENST00000470652 CHST2Q9Y4C5 530 aa5.37□□□□□ -1.55
COL9A1-206ENST00000470652 ACTL7AQ9Y615 435 aa5.37□□□□□ -1.55
COL9A1-206ENST00000470652 MYBBP1AQ9BQG0 1328 aaKnown RBP5.37□□□□□ -1.55
COL9A1-206ENST00000470652 RAB3GAP2Q9H2M9 1393 aa5.37□□□□□ -1.55
COL9A1-206ENST00000470652 MLH3Q9UHC1 1453 aa5.37□□□□□ -1.55
COL9A1-206ENST00000470652 RNASET2O00584 256 aaKnown RBP5.36□□□□□ -1.55
COL9A1-206ENST00000470652 RPS6KA4O75676 772 aa5.36□□□□□ -1.55
COL9A1-206ENST00000470652 POMCP01189 267 aa5.36□□□□□ -1.55
COL9A1-206ENST00000470652 AMY1AP04745 511 aa5.36□□□□□ -1.55
COL9A1-206ENST00000470652 ITGB1P05556 798 aa5.36□□□□□ -1.55
COL9A1-206ENST00000470652 SPATA31D3P0C874 917 aa5.36□□□□□ -1.55
COL9A1-206ENST00000470652 ZSCAN20P17040 1043 aaPredicted RBP5.36□□□□□ -1.55
COL9A1-206ENST00000470652 LAG3P18627 525 aa5.36□□□□□ -1.55
COL9A1-206ENST00000470652 PCSK1P29120 753 aa5.36□□□□□ -1.55
COL9A1-206ENST00000470652 RECQLP46063 649 aaPredicted RBP5.36□□□□□ -1.55
COL9A1-206ENST00000470652 ADKP55263 362 aaKnown RBP5.36□□□□□ -1.55
COL9A1-206ENST00000470652 RNASE9P60153 205 aaKnown RBP5.36□□□□□ -1.55
COL9A1-206ENST00000470652 RAP2BP61225 183 aa5.36□□□□□ -1.55
COL9A1-206ENST00000470652 KIF23Q02241 960 aaPredicted RBP5.36□□□□□ -1.55
COL9A1-206ENST00000470652 MTM1Q13496 603 aa5.36□□□□□ -1.55
COL9A1-206ENST00000470652 UBXN2BQ14CS0 331 aa5.36□□□□□ -1.55
COL9A1-206ENST00000470652 FAM102AQ5T9C2 384 aaPredicted RBP5.36□□□□□ -1.55
COL9A1-206ENST00000470652 SPATA31D4Q6ZUB0 917 aa5.36□□□□□ -1.55
COL9A1-206ENST00000470652 SEM1Q6ZVN7 128 aa5.36□□□□□ -1.55
COL9A1-206ENST00000470652 PLXDC1Q8IUK5 500 aa5.36□□□□□ -1.55
COL9A1-206ENST00000470652 RPUSD2Q8IZ73 545 aaKnown RBP5.36□□□□□ -1.55
COL9A1-206ENST00000470652 COA7Q96BR5 231 aa5.36□□□□□ -1.55
COL9A1-206ENST00000470652 REXO4Q9GZR2 422 aaKnown RBP5.36□□□□□ -1.55
COL9A1-206ENST00000470652 TDP1Q9NUW8 608 aa5.36□□□□□ -1.55
COL9A1-206ENST00000470652 TYW1Q9NV66 732 aaKnown RBP5.36□□□□□ -1.55
COL9A1-206ENST00000470652 SLC23A1Q9UHI7 598 aa5.36□□□□□ -1.55
COL9A1-206ENST00000470652 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.36□□□□□ -1.55
COL9A1-206ENST00000470652 A2MP01023 1474 aa5.36□□□□□ -1.55
COL9A1-206ENST00000470652 CLTCQ00610 1675 aaKnown RBP5.36□□□□□ -1.55
COL9A1-206ENST00000470652 HFM1A2PYH4 1435 aa5.35□□□□□ -1.55
COL9A1-206ENST00000470652 HTRA2O43464 458 aaPredicted RBP5.35□□□□□ -1.55
COL9A1-206ENST00000470652 SGTAO43765 313 aa5.35□□□□□ -1.55
COL9A1-206ENST00000470652 SNUPNO95149 360 aaKnown RBP5.35□□□□□ -1.55
COL9A1-206ENST00000470652 RPLP2P05387 115 aaKnown RBP5.35□□□□□ -1.55
COL9A1-206ENST00000470652 TGM1P22735 817 aa5.35□□□□□ -1.55
COL9A1-206ENST00000470652 NR4A1P22736 598 aa5.35□□□□□ -1.55
COL9A1-206ENST00000470652 CHN2P52757 468 aa5.35□□□□□ -1.55
COL9A1-206ENST00000470652 PTTG1IPP53801 180 aa5.35□□□□□ -1.55
COL9A1-206ENST00000470652 IGBP1P78318 339 aa5.35□□□□□ -1.55
COL9A1-206ENST00000470652 ATP8B2P98198 1209 aa5.35□□□□□ -1.55
COL9A1-206ENST00000470652 CDC42EP1Q00587 391 aa5.35□□□□□ -1.55
COL9A1-206ENST00000470652 CREMQ03060 361 aa5.35□□□□□ -1.55
COL9A1-206ENST00000470652 ODF1Q14990 250 aa5.35□□□□□ -1.55
COL9A1-206ENST00000470652 SMN1Q16637 294 aaKnown RBP5.35□□□□□ -1.55
COL9A1-206ENST00000470652 METRNLQ641Q3 311 aa5.35□□□□□ -1.55
COL9A1-206ENST00000470652 PPP4R3AQ6IN85 833 aa5.35□□□□□ -1.55
COL9A1-206ENST00000470652 ZNF529Q6P280 563 aa5.35□□□□□ -1.55
COL9A1-206ENST00000470652 MED25Q71SY5 747 aa5.35□□□□□ -1.55
COL9A1-206ENST00000470652 RHOUQ7L0Q8 258 aa5.35□□□□□ -1.55
COL9A1-206ENST00000470652 MRGPREQ86SM8 312 aa5.35□□□□□ -1.55
COL9A1-206ENST00000470652 RSPH3Q86UC2 560 aa5.35□□□□□ -1.55
COL9A1-206ENST00000470652 RHOT2Q8IXI1 618 aa5.35□□□□□ -1.55
COL9A1-206ENST00000470652 ZGPATQ8N5A5 531 aaKnown RBP5.35□□□□□ -1.55
COL9A1-206ENST00000470652 AMER2Q8N7J2 671 aa5.35□□□□□ -1.55
COL9A1-206ENST00000470652 MYEOVQ96EZ4 313 aa5.35□□□□□ -1.55
COL9A1-206ENST00000470652 ZNF768Q9H5H4 540 aaKnown RBP5.35□□□□□ -1.55
COL9A1-206ENST00000470652 AKIP1Q9NQ31 210 aa5.35□□□□□ -1.55
COL9A1-206ENST00000470652 LIMCH1Q9UPQ0 1083 aa5.35□□□□□ -1.55
COL9A1-206ENST00000470652 ATP11BQ9Y2G3 1177 aa5.35□□□□□ -1.55
COL9A1-206ENST00000470652 USP15Q9Y4E8 981 aaPredicted RBP5.35□□□□□ -1.55
COL9A1-206ENST00000470652 IPPQ9Y573 584 aa5.35□□□□□ -1.55
COL9A1-206ENST00000470652 RIMS1Q86UR5 1692 aaKnown RBP5.34□□□□□ -1.55
COL9A1-206ENST00000470652 DEPDC5O75140 1603 aa5.34□□□□□ -1.55
COL9A1-206ENST00000470652 MADDQ8WXG6 1647 aa5.34□□□□□ -1.55
COL9A1-206ENST00000470652 UNC13BO14795 1591 aa5.34□□□□□ -1.55
COL9A1-206ENST00000470652 DUOX2Q9NRD8 1548 aa5.34□□□□□ -1.55
COL9A1-206ENST00000470652 ATP10AO60312 1499 aa5.34□□□□□ -1.55
COL9A1-206ENST00000470652 PZPP20742 1482 aa5.34□□□□□ -1.55
COL9A1-206ENST00000470652 SETD5Q9C0A6 1442 aa5.34□□□□□ -1.55
COL9A1-206ENST00000470652 ANKRD50Q9ULJ7 1429 aa5.34□□□□□ -1.55
COL9A1-206ENST00000470652 ANKRD30AQ9BXX3 1397 aa5.34□□□□□ -1.55
COL9A1-206ENST00000470652 KIF3BO15066 747 aa5.34□□□□□ -1.55
COL9A1-206ENST00000470652 ZNF185O15231 689 aa5.34□□□□□ -1.55
COL9A1-206ENST00000470652 HLA-DOAP06340 250 aa5.34□□□□□ -1.55
COL9A1-206ENST00000470652 TSPY4P0CV99 314 aa5.34□□□□□ -1.55
COL9A1-206ENST00000470652 TSPY10P0CW01 314 aa5.34□□□□□ -1.55
COL9A1-206ENST00000470652 ALAS1P13196 640 aa5.34□□□□□ -1.55
COL9A1-206ENST00000470652 CTXN1P60606 82 aa5.34□□□□□ -1.55
COL9A1-206ENST00000470652 FAM189BP81408 668 aa5.34□□□□□ -1.55
COL9A1-206ENST00000470652 TIGD2Q4W5G0 525 aa5.34□□□□□ -1.55
COL9A1-206ENST00000470652 LY6G5CQ5SRR4 150 aa5.34□□□□□ -1.55
COL9A1-206ENST00000470652 DACT2Q5SW24 774 aa5.34□□□□□ -1.55
COL9A1-206ENST00000470652 AGAP9Q5VTM2 703 aa5.34□□□□□ -1.55
COL9A1-206ENST00000470652 LRRC55Q6ZSA7 311 aa5.34□□□□□ -1.55
COL9A1-206ENST00000470652 ULK2Q8IYT8 1036 aa5.34□□□□□ -1.55
COL9A1-206ENST00000470652 MIER2Q8N344 545 aa5.34□□□□□ -1.55
COL9A1-206ENST00000470652 NLGN4YQ8NFZ3 816 aaPredicted RBP5.34□□□□□ -1.55
COL9A1-206ENST00000470652 NEU4Q8WWR8 484 aaPredicted RBP5.34□□□□□ -1.55
COL9A1-206ENST00000470652 CHMP4CQ96CF2 233 aa5.34□□□□□ -1.55
COL9A1-206ENST00000470652 CHFRQ96EP1 664 aa5.34□□□□□ -1.55
COL9A1-206ENST00000470652 PHACTR3Q96KR7 559 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms