RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 DCAF4Q8WV16 495 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 P2RX7Q99572 595 aaKnown RBP11.33□□□□□ -0.6
CHD3-208ENST00000470531 SLC4A7Q9Y6M7 1214 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 ATXN2Q99700 1313 aaKnown RBP11.33□□□□□ -0.6
CHD3-208ENST00000470531 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.33□□□□□ -0.6
CHD3-208ENST00000470531 CFLARO15519 480 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 ENO1P06733 434 aaKnown RBP11.33□□□□□ -0.6
CHD3-208ENST00000470531 EPHB2P29323 1055 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 ARL1P40616 181 aaPredicted RBP11.33□□□□□ -0.6
CHD3-208ENST00000470531 RGS7P49802 495 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 TMPRSS15P98073 1019 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 SPARCL1Q14515 664 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 Q3C1V9 767 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 AGBL2Q5U5Z8 902 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 SV2AQ7L0J3 742 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 OTOP1Q7RTM1 612 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 QTRT2Q9H974 415 aaKnown RBP11.33□□□□□ -0.6
CHD3-208ENST00000470531 PACSIN3Q9UKS6 424 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 ENTPD5O75356 428 aa11.32□□□□□ -0.6
CHD3-208ENST00000470531 NCF2P19878 526 aaPredicted RBP11.32□□□□□ -0.6
CHD3-208ENST00000470531 PKN2Q16513 984 aaKnown RBP11.32□□□□□ -0.6
CHD3-208ENST00000470531 ZCWPW2Q504Y3 356 aa11.32□□□□□ -0.6
CHD3-208ENST00000470531 C3orf62Q6ZUJ4 267 aa11.32□□□□□ -0.6
CHD3-208ENST00000470531 WRAP73Q9P2S5 460 aaPredicted RBP11.32□□□□□ -0.6
CHD3-208ENST00000470531 ARL2BPQ9Y2Y0 163 aa11.32□□□□□ -0.6
CHD3-208ENST00000470531 USP54Q70EL1 1684 aa11.32□□□□□ -0.6
CHD3-208ENST00000470531 PFASO15067 1338 aa11.32□□□□□ -0.6
CHD3-208ENST00000470531 MAPK13O15264 365 aa11.32□□□□□ -0.6
CHD3-208ENST00000470531 NQO1P15559 274 aaKnown RBP11.32□□□□□ -0.6
CHD3-208ENST00000470531 RPS6P62753 249 aaKnown RBP11.32□□□□□ -0.6
CHD3-208ENST00000470531 AUHQ13825 339 aaKnown RBP11.32□□□□□ -0.6
CHD3-208ENST00000470531 SLC10A5Q5PT55 438 aa11.32□□□□□ -0.6
CHD3-208ENST00000470531 DCAF12L1Q5VU92 463 aa11.32□□□□□ -0.6
CHD3-208ENST00000470531 NXNQ6DKJ4 435 aa11.32□□□□□ -0.6
CHD3-208ENST00000470531 MTDHQ86UE4 582 aaKnown RBP11.32□□□□□ -0.6
CHD3-208ENST00000470531 MIS12Q9H081 205 aa11.32□□□□□ -0.6
CHD3-208ENST00000470531 RBAKQ9NYW8 714 aaPredicted RBP11.32□□□□□ -0.6
CHD3-208ENST00000470531 MYH7BA7E2Y1 1941 aa11.32□□□□□ -0.6
CHD3-208ENST00000470531 I3L4J1 428 aa11.32□□□□□ -0.6
CHD3-208ENST00000470531 ALDH18A1P54886 795 aaKnown RBP11.32□□□□□ -0.6
CHD3-208ENST00000470531 NLRP11P59045 1033 aaKnown RBP11.32□□□□□ -0.6
CHD3-208ENST00000470531 COPS2P61201 443 aa11.32□□□□□ -0.6
CHD3-208ENST00000470531 OR6B2Q6IFH4 312 aa11.32□□□□□ -0.6
CHD3-208ENST00000470531 NCAPG2Q86XI2 1143 aa11.32□□□□□ -0.6
CHD3-208ENST00000470531 LRRC71Q8N4P6 559 aa11.32□□□□□ -0.6
CHD3-208ENST00000470531 C1orf131Q8NDD1 294 aaKnown RBP11.32□□□□□ -0.6
CHD3-208ENST00000470531 SLC7A3Q8WY07 619 aa11.32□□□□□ -0.6
CHD3-208ENST00000470531 FAM149B1Q96BN6 582 aa11.32□□□□□ -0.6
CHD3-208ENST00000470531 CFAP57Q96MR6 1250 aa11.32□□□□□ -0.6
CHD3-208ENST00000470531 WNT8AQ9H1J5 351 aa11.32□□□□□ -0.6
CHD3-208ENST00000470531 ADAMTS7Q9UKP4 1686 aa11.32□□□□□ -0.6
CHD3-208ENST00000470531 PITPNM2Q9BZ72 1349 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 GLI3P10071 1580 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 MKRN3Q13064 507 aaKnown RBP11.31□□□□□ -0.6
CHD3-208ENST00000470531 FASTKD3Q14CZ7 662 aaKnown RBP11.31□□□□□ -0.6
CHD3-208ENST00000470531 C11orf63Q6NUN7 778 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 EFCAB3Q8N7B9 438 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 SPDYE1Q8NFV5 336 aaPredicted RBP11.31□□□□□ -0.6
CHD3-208ENST00000470531 RAB3IPQ96QF0 476 aaPredicted RBP11.31□□□□□ -0.6
CHD3-208ENST00000470531 POLR3FQ9H1D9 316 aaPredicted RBP11.31□□□□□ -0.6
CHD3-208ENST00000470531 DLGAP2Q9P1A6 1054 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 TRAF3IP3Q9Y228 551 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 WDR64B1ANS9 1081 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 TRPA1O75762 1119 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 RNF8O76064 485 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 ADRB2P07550 413 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 PAX3P23760 479 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 HOXD13P35453 343 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 XRCC4Q13426 336 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 LRRC23Q53EV4 343 aaPredicted RBP11.31□□□□□ -0.6
CHD3-208ENST00000470531 SNRNP48Q6IEG0 339 aaKnown RBP11.31□□□□□ -0.6
CHD3-208ENST00000470531 LRRC57Q8N9N7 239 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 FAM71DQ8N9W8 422 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 CCNYQ8ND76 341 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 ATL2Q8NHH9 583 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 SEMA4DQ92854 862 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 FHDC1Q9C0D6 1143 aaPredicted RBP11.31□□□□□ -0.6
CHD3-208ENST00000470531 ZNF408Q9H9D4 720 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 PHTF1Q9UMS5 762 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 ATP9AO75110 1047 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 HLA-DRAP01903 254 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 CYP3A4P08684 503 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 YARSP54577 528 aaKnown RBP11.31□□□□□ -0.6
CHD3-208ENST00000470531 CDR2Q01850 454 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 CRYMQ14894 314 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 PDCD2Q16342 344 aaPredicted RBP11.31□□□□□ -0.6
CHD3-208ENST00000470531 ERMARDQ5T6L9 678 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 CYP4X1Q8N118 509 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 NME8Q8N427 588 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 RMDN2Q96LZ7 410 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 FAM111AQ96PZ2 611 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 DDX50Q9BQ39 737 aaKnown RBP11.31□□□□□ -0.6
CHD3-208ENST00000470531 ATP6V0A4Q9HBG4 840 aa11.31□□□□□ -0.6
CHD3-208ENST00000470531 DUOX1Q9NRD9 1551 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 MGRN1O60291 552 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 CIB2O75838 187 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 APRTP07741 180 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 GTF2H1P32780 548 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 BMPR2Q13873 1038 aa11.3□□□□□ -0.6
CHD3-208ENST00000470531 PCNX4Q63HM2 1172 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms