RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 CDT1Q9H211 546 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 RPF1Q9H9Y2 349 aaKnown RBP8.14□□□□□ -1.11
COL6A3-208ENST00000468792 PLEKHA5Q9HAU0 1116 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 CYP3A43Q9HB55 503 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 PSD3Q9NYI0 1048 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 PCDHGC3Q9UN70 934 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 PACSIN2Q9UNF0 486 aaPredicted RBP8.14□□□□□ -1.11
COL6A3-208ENST00000468792 DERAQ9Y315 318 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 NOC2LQ9Y3T9 749 aaKnown RBP8.14□□□□□ -1.11
COL6A3-208ENST00000468792 C2CD2Q9Y426 696 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 NUB1Q9Y5A7 615 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 SCINQ9Y6U3 715 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 NRCAMQ92823 1304 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 A0A1B0GUA9 196 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 MBLAC1A4D2B0 266 aaPredicted RBP8.13□□□□□ -1.11
COL6A3-208ENST00000468792 TTLL13PA6NNM8 815 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 INO80B-WBP1J3KQ70 363 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 KRIT1O00522 736 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 MAP3K13O43283 966 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 HEXIM1O94992 359 aaKnown RBP8.13□□□□□ -1.11
COL6A3-208ENST00000468792 CELF2O95319 508 aaKnown RBP8.13□□□□□ -1.11
COL6A3-208ENST00000468792 F2P00734 622 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 CST3P01034 146 aaPredicted RBP8.13□□□□□ -1.11
COL6A3-208ENST00000468792 TNNC2P02585 160 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 GLI1P08151 1106 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 MMP3P08254 477 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 PAEPP09466 180 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 SMPD1P17405 629 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 COMTP21964 271 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 MMP8P22894 467 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 GNA15P30679 374 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 CHRNA3P32297 505 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 ADCYAP1R1P41586 468 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 NSFP46459 744 aaKnown RBP8.13□□□□□ -1.11
COL6A3-208ENST00000468792 GSCP56915 257 aaPredicted RBP8.13□□□□□ -1.11
COL6A3-208ENST00000468792 NOMO3P69849 1222 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 TAP1Q03518 808 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 MAP2K5Q13163 448 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 TRPC3Q13507 836 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 TERF2Q15554 542 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 DCAF4L1Q3SXM0 396 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 ZNF568Q3ZCX4 644 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 HSP90B2PQ58FF3 399 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 LIN9Q5TKA1 542 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 DCAF12L1Q5VU92 463 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 TAF3Q5VWG9 929 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 PLEKHA7Q6IQ23 1121 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 IFNL1Q8IU54 200 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 PIP4P2Q8N4L2 257 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 C12orf50Q8NA57 414 aaPredicted RBP8.13□□□□□ -1.11
COL6A3-208ENST00000468792 RBBP8NLQ8NC74 664 aaPredicted RBP8.13□□□□□ -1.11
COL6A3-208ENST00000468792 MAIP1Q8WWC4 291 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 SLCO2A1Q92959 643 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 ZNF653Q96CK0 615 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 RNPC3Q96LT9 517 aaKnown RBP8.13□□□□□ -1.11
COL6A3-208ENST00000468792 KRT12Q99456 494 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 BCO2Q9BYV7 579 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 INO80BQ9C086 356 aaPredicted RBP8.13□□□□□ -1.11
COL6A3-208ENST00000468792 LHX5Q9H2C1 402 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 EHD2Q9NZN4 543 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 CNOT8Q9UFF9 292 aaKnown RBP8.13□□□□□ -1.11
COL6A3-208ENST00000468792 PCYOX1Q9UHG3 505 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 HPCAL4Q9UM19 191 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 GNEQ9Y223 722 aaKnown RBP8.13□□□□□ -1.11
COL6A3-208ENST00000468792 PCDHB4Q9Y5E5 795 aa8.13□□□□□ -1.11
COL6A3-208ENST00000468792 SMIM35A0A1B0GVV1 85 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 GPR25O00155 361 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 MYO1FO00160 1098 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 PODXLO00592 558 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 RAD51CO43502 376 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 PROSCO94903 275 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 ITGBL1O95965 494 aaPredicted RBP8.12□□□□□ -1.11
COL6A3-208ENST00000468792 FGGP02679 453 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 CALB1P05937 261 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 IQCF3P0C7M6 154 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 TMEM191BP0C7N4 346 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 MYBL2P10244 700 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 P4HA1P13674 534 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 AXLP30530 894 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 TNFSF9P41273 254 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 FNTAP49354 379 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 CLCN3P51790 818 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 RWDD2BP57060 319 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 PPFIA1Q13136 1202 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 GRIK4Q16099 956 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 MARCH8Q5T0T0 291 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 TMEM63BQ5T3F8 832 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 LRRC38Q5VT99 294 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 CST9Q5W186 159 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 TMEM270Q6UE05 265 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 C17orf99Q6UX52 265 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 DNAAF5Q86Y56 855 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 KIAA0319LQ8IZA0 1049 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 IQCKQ8N0W5 287 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 OR6J1Q8NGC5 347 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 CXorf38Q8TB03 319 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 ZNF606Q8WXB4 792 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 ALG3Q92685 438 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 EXOC4Q96A65 974 aa8.12□□□□□ -1.11
COL6A3-208ENST00000468792 KIF12Q96FN5 646 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms