RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 IL12RB1P42701 662 aa5.66□□□□□ -1.5
CCDC88A-210ENST00000468534 PPM1FP49593 454 aaPredicted RBP5.66□□□□□ -1.5
CCDC88A-210ENST00000468534 CCDC142Q17RM4 750 aa5.66□□□□□ -1.5
CCDC88A-210ENST00000468534 BEAN1Q3B7T3 259 aa5.66□□□□□ -1.5
CCDC88A-210ENST00000468534 PDCD4Q53EL6 469 aaKnown RBP5.66□□□□□ -1.5
CCDC88A-210ENST00000468534 CT83Q5H943 113 aa5.66□□□□□ -1.5
CCDC88A-210ENST00000468534 PITRM1Q5JRX3 1037 aa5.66□□□□□ -1.5
CCDC88A-210ENST00000468534 SPECC1Q5M775 1068 aa5.66□□□□□ -1.5
CCDC88A-210ENST00000468534 WDR45BQ5MNZ6 344 aa5.66□□□□□ -1.5
CCDC88A-210ENST00000468534 PPP4R3AQ6IN85 833 aa5.66□□□□□ -1.5
CCDC88A-210ENST00000468534 CFAP161Q6P656 301 aa5.66□□□□□ -1.5
CCDC88A-210ENST00000468534 BTNL9Q6UXG8 535 aa5.66□□□□□ -1.5
CCDC88A-210ENST00000468534 UBE2Q1Q7Z7E8 422 aa5.66□□□□□ -1.5
CCDC88A-210ENST00000468534 DGKHQ86XP1 1220 aa5.66□□□□□ -1.5
CCDC88A-210ENST00000468534 ARHGEF19Q8IW93 802 aa5.66□□□□□ -1.5
CCDC88A-210ENST00000468534 AHI1Q8N157 1196 aa5.66□□□□□ -1.5
CCDC88A-210ENST00000468534 ENAHQ8N8S7 591 aaPredicted RBP5.66□□□□□ -1.5
CCDC88A-210ENST00000468534 TFAP2CQ92754 450 aa5.66□□□□□ -1.5
CCDC88A-210ENST00000468534 CEP95Q96GE4 821 aa5.66□□□□□ -1.5
CCDC88A-210ENST00000468534 PHACTR3Q96KR7 559 aa5.66□□□□□ -1.5
CCDC88A-210ENST00000468534 HERPUD2Q9BSE4 406 aa5.66□□□□□ -1.5
CCDC88A-210ENST00000468534 EMC7Q9NPA0 242 aa5.66□□□□□ -1.5
CCDC88A-210ENST00000468534 TMCC3Q9ULS5 477 aa5.66□□□□□ -1.5
CCDC88A-210ENST00000468534 NOC2LQ9Y3T9 749 aaKnown RBP5.66□□□□□ -1.5
CCDC88A-210ENST00000468534 USP15Q9Y4E8 981 aaPredicted RBP5.66□□□□□ -1.5
CCDC88A-210ENST00000468534 GAGE12BA1L429 117 aa5.65□□□□□ -1.5
CCDC88A-210ENST00000468534 GAGE12HA6NDE8 117 aa5.65□□□□□ -1.5
CCDC88A-210ENST00000468534 B5MCH6 92 aa5.65□□□□□ -1.5
CCDC88A-210ENST00000468534 MASP2O00187 686 aa5.65□□□□□ -1.5
CCDC88A-210ENST00000468534 PIP5K1CO60331 668 aa5.65□□□□□ -1.5
CCDC88A-210ENST00000468534 LMO1P25800 156 aa5.65□□□□□ -1.5
CCDC88A-210ENST00000468534 HOXC13P31276 330 aa5.65□□□□□ -1.5
CCDC88A-210ENST00000468534 SSR1P43307 286 aaKnown RBP5.65□□□□□ -1.5
CCDC88A-210ENST00000468534 LGALS4P56470 323 aa5.65□□□□□ -1.5
CCDC88A-210ENST00000468534 GUCY1B3Q02153 619 aa5.65□□□□□ -1.5
CCDC88A-210ENST00000468534 TP53BP2Q13625 1128 aa5.65□□□□□ -1.5
CCDC88A-210ENST00000468534 NXNQ6DKJ4 435 aa5.65□□□□□ -1.5
CCDC88A-210ENST00000468534 MMS22LQ6ZRQ5 1243 aa5.65□□□□□ -1.5
CCDC88A-210ENST00000468534 ADGRG3Q86Y34 549 aa5.65□□□□□ -1.5
CCDC88A-210ENST00000468534 TCEAL8Q8IYN2 117 aa5.65□□□□□ -1.5
CCDC88A-210ENST00000468534 SNX33Q8WV41 574 aa5.65□□□□□ -1.5
CCDC88A-210ENST00000468534 LEO1Q8WVC0 666 aaPredicted RBP5.65□□□□□ -1.5
CCDC88A-210ENST00000468534 ATRIPQ8WXE1 791 aa5.65□□□□□ -1.5
CCDC88A-210ENST00000468534 SLC5A5Q92911 643 aa5.65□□□□□ -1.5
CCDC88A-210ENST00000468534 ZNF764Q96H86 408 aaPredicted RBP5.65□□□□□ -1.5
CCDC88A-210ENST00000468534 KCTD10Q9H3F6 313 aa5.65□□□□□ -1.5
CCDC88A-210ENST00000468534 SYNPO2LQ9H987 977 aa5.65□□□□□ -1.5
CCDC88A-210ENST00000468534 GPRC5DQ9NZD1 345 aa5.65□□□□□ -1.5
CCDC88A-210ENST00000468534 CDY2AQ9Y6F7 541 aa5.65□□□□□ -1.5
CCDC88A-210ENST00000468534 TBKBP1A7MCY6 615 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 SPATA31D3P0C874 917 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 TRIM27P14373 513 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 PSMA3P25788 255 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 DDX6P26196 483 aaKnown RBP eCLIP5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 MGAT1P26572 445 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 DDIT3P35638 169 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 PLA2G5P39877 138 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 PIK3CAP42336 1068 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 AVPR1BP47901 424 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 NEK2P51955 445 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 TAP1Q03518 808 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 DCTN1Q14203 1278 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 MLC1Q15049 377 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 PRAMEF14Q5SWL7 426 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 SPATA31D4Q6ZUB0 917 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 CATIPQ7Z7H3 387 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 MORC1Q86VD1 984 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 LCA5Q86VQ0 697 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 THNSL2Q86YJ6 484 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 SLC41A1Q8IVJ1 513 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 NKAIN3Q8N8D7 197 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 CHAC2Q8WUX2 184 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 RSAD2Q8WXG1 361 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 TBC1D20Q96BZ9 403 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 BBC3Q96PG8 261 aaPredicted RBP5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 ASPSCR1Q9BZE9 553 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 CDH19Q9H159 772 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 WNT8AQ9H1J5 351 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 IP6K2Q9UHH9 426 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 MCM8Q9UJA3 840 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 PLAAQ9Y263 795 aa5.64□□□□□ -1.51
CCDC88A-210ENST00000468534 TRIM64CA6NLI5 447 aa5.63□□□□□ -1.51
CCDC88A-210ENST00000468534 DIRC3C9JPN6 131 aa5.63□□□□□ -1.51
CCDC88A-210ENST00000468534 CHL1O00533 1208 aa5.63□□□□□ -1.51
CCDC88A-210ENST00000468534 ADCY6O43306 1168 aa5.63□□□□□ -1.51
CCDC88A-210ENST00000468534 KCNA2P16389 499 aa5.63□□□□□ -1.51
CCDC88A-210ENST00000468534 CTSSP25774 331 aa5.63□□□□□ -1.51
CCDC88A-210ENST00000468534 NEK3P51956 506 aa5.63□□□□□ -1.51
CCDC88A-210ENST00000468534 EIF5P55010 431 aaKnown RBP5.63□□□□□ -1.51
CCDC88A-210ENST00000468534 MEF2AQ02078 507 aaPredicted RBP5.63□□□□□ -1.51
CCDC88A-210ENST00000468534 NUCB1Q02818 461 aa5.63□□□□□ -1.51
CCDC88A-210ENST00000468534 ZKSCAN8Q15776 578 aaPredicted RBP5.63□□□□□ -1.51
CCDC88A-210ENST00000468534 ATP13A4Q4VNC1 1196 aa5.63□□□□□ -1.51
CCDC88A-210ENST00000468534 DACT2Q5SW24 774 aa5.63□□□□□ -1.51
CCDC88A-210ENST00000468534 FAM102BQ5T8I3 360 aa5.63□□□□□ -1.51
CCDC88A-210ENST00000468534 IL31Q6EBC2 164 aa5.63□□□□□ -1.51
CCDC88A-210ENST00000468534 DRICH1Q6PGQ1 229 aaPredicted RBP5.63□□□□□ -1.51
CCDC88A-210ENST00000468534 LVRNQ6Q4G3 990 aa5.63□□□□□ -1.51
CCDC88A-210ENST00000468534 PRIMA1Q86XR5 153 aa5.63□□□□□ -1.51
CCDC88A-210ENST00000468534 ZNF354CQ86Y25 554 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms