RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 ROR1Q01973 937 aa20.74■□□□□ 0.91
COL7A1-207ENST00000467985 TPGS2Q68CL5 300 aa20.74■□□□□ 0.91
COL7A1-207ENST00000467985 ADALQ6DHV7 355 aa20.74■□□□□ 0.91
COL7A1-207ENST00000467985 ZNF280DQ6N043 979 aa20.74■□□□□ 0.91
COL7A1-207ENST00000467985 SLC39A4Q6P5W5 647 aa20.74■□□□□ 0.91
COL7A1-207ENST00000467985 DNAJC19Q96DA6 116 aa20.74■□□□□ 0.91
COL7A1-207ENST00000467985 OXCT2Q9BYC2 517 aaPredicted RBP20.74■□□□□ 0.91
COL7A1-207ENST00000467985 POLIQ9UNA4 740 aa20.74■□□□□ 0.91
COL7A1-207ENST00000467985 EXOC7Q9UPT5 735 aa20.74■□□□□ 0.91
COL7A1-207ENST00000467985 STYXL1Q9Y6J8 313 aa20.74■□□□□ 0.91
COL7A1-207ENST00000467985 DOCK8Q8NF50 2099 aa20.74■□□□□ 0.91
COL7A1-207ENST00000467985 MYH15Q9Y2K3 1946 aa20.74■□□□□ 0.91
COL7A1-207ENST00000467985 M0QZQ0 153 aa20.73■□□□□ 0.91
COL7A1-207ENST00000467985 PPP6R2O75170 966 aa20.73■□□□□ 0.91
COL7A1-207ENST00000467985 YEATS4O95619 227 aa20.73■□□□□ 0.91
COL7A1-207ENST00000467985 ATF2P15336 505 aa20.73■□□□□ 0.91
COL7A1-207ENST00000467985 SPAG1Q07617 926 aa20.73■□□□□ 0.91
COL7A1-207ENST00000467985 ALCAMQ13740 583 aa20.73■□□□□ 0.91
COL7A1-207ENST00000467985 POSTNQ15063 836 aa20.73■□□□□ 0.91
COL7A1-207ENST00000467985 CTXN3Q4LDR2 81 aa20.73■□□□□ 0.91
COL7A1-207ENST00000467985 ZBTB41Q5SVQ8 909 aa20.73■□□□□ 0.91
COL7A1-207ENST00000467985 BEST2Q8NFU1 509 aa20.73■□□□□ 0.91
COL7A1-207ENST00000467985 LRRC27Q9C0I9 530 aa20.73■□□□□ 0.91
COL7A1-207ENST00000467985 MFSD1Q9H3U5 465 aa20.73■□□□□ 0.91
COL7A1-207ENST00000467985 SMOC2Q9H3U7 446 aa20.73■□□□□ 0.91
COL7A1-207ENST00000467985 ASB7Q9H672 318 aa20.73■□□□□ 0.91
COL7A1-207ENST00000467985 OLFML3Q9NRN5 406 aa20.73■□□□□ 0.91
COL7A1-207ENST00000467985 FBXL5Q9UKA1 691 aa20.73■□□□□ 0.91
COL7A1-207ENST00000467985 AGO2Q9UKV8 859 aaKnown RBP20.73■□□□□ 0.91
COL7A1-207ENST00000467985 PCDHB13Q9Y5F0 798 aa20.73■□□□□ 0.91
COL7A1-207ENST00000467985 KMT2EQ8IZD2 1858 aa20.73■□□□□ 0.91
COL7A1-207ENST00000467985 ARHGEF37A1IGU5 675 aa20.72■□□□□ 0.91
COL7A1-207ENST00000467985 ANKRD63C9JTQ0 380 aa20.72■□□□□ 0.91
COL7A1-207ENST00000467985 PRRG1O14668 218 aa20.72■□□□□ 0.91
COL7A1-207ENST00000467985 PPP1R37O75864 691 aa20.72■□□□□ 0.91
COL7A1-207ENST00000467985 PDGFBP01127 241 aaPredicted RBP20.72■□□□□ 0.91
COL7A1-207ENST00000467985 AVPR2P30518 371 aa20.72■□□□□ 0.91
COL7A1-207ENST00000467985 AARSP49588 968 aaKnown RBP eCLIP20.72■□□□□ 0.91
COL7A1-207ENST00000467985 BECN1Q14457 450 aa20.72■□□□□ 0.91
COL7A1-207ENST00000467985 SPATA1Q5VX52 437 aa20.72■□□□□ 0.91
COL7A1-207ENST00000467985 TCEAL8Q8IYN2 117 aa20.72■□□□□ 0.91
COL7A1-207ENST00000467985 FAM212AQ96EL1 285 aa20.72■□□□□ 0.91
COL7A1-207ENST00000467985 ACCSQ96QU6 501 aa20.72■□□□□ 0.91
COL7A1-207ENST00000467985 STRA6Q9BX79 667 aa20.72■□□□□ 0.91
COL7A1-207ENST00000467985 PANK2Q9BZ23 570 aa20.72■□□□□ 0.91
COL7A1-207ENST00000467985 CDH7Q9ULB5 785 aa20.72■□□□□ 0.91
COL7A1-207ENST00000467985 KCNH3Q9ULD8 1083 aa20.72■□□□□ 0.91
COL7A1-207ENST00000467985 WDR27A2RRH5 827 aa20.71■□□□□ 0.91
COL7A1-207ENST00000467985 ANHXE9PGG2 379 aa20.71■□□□□ 0.91
COL7A1-207ENST00000467985 OAZ2O95190 189 aa20.71■□□□□ 0.91
COL7A1-207ENST00000467985 LRG1P02750 347 aa20.71■□□□□ 0.91
COL7A1-207ENST00000467985 IDEP14735 1019 aa20.71■□□□□ 0.91
COL7A1-207ENST00000467985 PTPN5P54829 565 aa20.71■□□□□ 0.91
COL7A1-207ENST00000467985 VCPP55072 806 aaKnown RBP20.71■□□□□ 0.91
COL7A1-207ENST00000467985 NHLH1Q02575 133 aa20.71■□□□□ 0.91
COL7A1-207ENST00000467985 YWHAHQ04917 246 aaPredicted RBP20.71■□□□□ 0.91
COL7A1-207ENST00000467985 TMEM132DQ14C87 1099 aa20.71■□□□□ 0.91
COL7A1-207ENST00000467985 PABPC1LQ4VXU2 614 aaKnown RBP20.71■□□□□ 0.91
COL7A1-207ENST00000467985 JADE1Q6IE81 842 aa20.71■□□□□ 0.91
COL7A1-207ENST00000467985 SLC44A3Q8N4M1 653 aa20.71■□□□□ 0.91
COL7A1-207ENST00000467985 POMGNT1Q8WZA1 660 aa20.71■□□□□ 0.91
COL7A1-207ENST00000467985 CUEDC2Q9H467 287 aa20.71■□□□□ 0.91
COL7A1-207ENST00000467985 FBXL21Q9UKT6 434 aa20.71■□□□□ 0.91
COL7A1-207ENST00000467985 C2CD2Q9Y426 696 aa20.71■□□□□ 0.91
COL7A1-207ENST00000467985 A0A087X0B3 334 aa20.7■□□□□ 0.9
COL7A1-207ENST00000467985 FRMD3A2A2Y4 597 aa20.7■□□□□ 0.9
COL7A1-207ENST00000467985 GCNT3O95395 438 aa20.7■□□□□ 0.9
COL7A1-207ENST00000467985 ZSCAN22P10073 491 aaPredicted RBP20.7■□□□□ 0.9
COL7A1-207ENST00000467985 ACOT2P49753 483 aa20.7■□□□□ 0.9
COL7A1-207ENST00000467985 ARPP19P56211 112 aa20.7■□□□□ 0.9
COL7A1-207ENST00000467985 HTR4Q13639 388 aa20.7■□□□□ 0.9
COL7A1-207ENST00000467985 L1TD1Q5T7N2 865 aaKnown RBP20.7■□□□□ 0.9
COL7A1-207ENST00000467985 IER5LQ5T953 404 aa20.7■□□□□ 0.9
COL7A1-207ENST00000467985 ASTLQ6HA08 431 aaPredicted RBP20.7■□□□□ 0.9
COL7A1-207ENST00000467985 DSTYKQ6XUX3 929 aa20.7■□□□□ 0.9
COL7A1-207ENST00000467985 MTSS1LQ765P7 747 aa20.7■□□□□ 0.9
COL7A1-207ENST00000467985 USP37Q86T82 979 aa20.7■□□□□ 0.9
COL7A1-207ENST00000467985 PDILTQ8N807 584 aa20.7■□□□□ 0.9
COL7A1-207ENST00000467985 RSAD2Q8WXG1 361 aa20.7■□□□□ 0.9
COL7A1-207ENST00000467985 IRF2BPLQ9H1B7 796 aa20.7■□□□□ 0.9
COL7A1-207ENST00000467985 TNMDQ9H2S6 317 aa20.7■□□□□ 0.9
COL7A1-207ENST00000467985 AVENQ9NQS1 362 aaPredicted RBP20.7■□□□□ 0.9
COL7A1-207ENST00000467985 PANK4Q9NVE7 773 aa20.7■□□□□ 0.9
COL7A1-207ENST00000467985 TFIP11Q9UBB9 837 aaKnown RBP20.7■□□□□ 0.9
COL7A1-207ENST00000467985 WNT16Q9UBV4 365 aa20.7■□□□□ 0.9
COL7A1-207ENST00000467985 CACNA1HO95180 2353 aa20.7■□□□□ 0.9
COL7A1-207ENST00000467985 CUTAO60888 179 aa20.69■□□□□ 0.9
COL7A1-207ENST00000467985 IL18RAPO95256 599 aa20.69■□□□□ 0.9
COL7A1-207ENST00000467985 SRFP11831 508 aa20.69■□□□□ 0.9
COL7A1-207ENST00000467985 HOXD11P31277 338 aaPredicted RBP20.69■□□□□ 0.9
COL7A1-207ENST00000467985 CLCN5P51795 746 aa20.69■□□□□ 0.9
COL7A1-207ENST00000467985 LILRA4P59901 499 aa20.69■□□□□ 0.9
COL7A1-207ENST00000467985 NTHL1P78549 312 aa20.69■□□□□ 0.9
COL7A1-207ENST00000467985 AMPD3Q01432 767 aa20.69■□□□□ 0.9
COL7A1-207ENST00000467985 ATL3Q6DD88 541 aa20.69■□□□□ 0.9
COL7A1-207ENST00000467985 CCDC65Q8IXS2 484 aa20.69■□□□□ 0.9
COL7A1-207ENST00000467985 PRSS33Q8NF86 280 aa20.69■□□□□ 0.9
COL7A1-207ENST00000467985 FGF13Q92913 245 aa20.69■□□□□ 0.9
COL7A1-207ENST00000467985 CYP4F11Q9HBI6 524 aa20.69■□□□□ 0.9
COL7A1-207ENST00000467985 TBC1D7Q9P0N9 293 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms