RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 CGRRF1Q99675 332 aa6.43□□□□□ -1.38
USP39-213ENST00000467885 HTATIP2Q9BUP3 242 aa6.43□□□□□ -1.38
USP39-213ENST00000467885 APOL6Q9BWW8 343 aa6.43□□□□□ -1.38
USP39-213ENST00000467885 NAA15Q9BXJ9 866 aaKnown RBP6.43□□□□□ -1.38
USP39-213ENST00000467885 TRIM6Q9C030 488 aaPredicted RBP6.43□□□□□ -1.38
USP39-213ENST00000467885 XYLT2Q9H1B5 865 aa6.43□□□□□ -1.38
USP39-213ENST00000467885 MMRN2Q9H8L6 949 aa6.43□□□□□ -1.38
USP39-213ENST00000467885 PLCB1Q9NQ66 1216 aa6.43□□□□□ -1.38
USP39-213ENST00000467885 PRDM5Q9NQX1 630 aaPredicted RBP6.43□□□□□ -1.38
USP39-213ENST00000467885 DPP3Q9NY33 737 aa6.43□□□□□ -1.38
USP39-213ENST00000467885 C2CD2Q9Y426 696 aa6.43□□□□□ -1.38
USP39-213ENST00000467885 PCDHB7Q9Y5E2 793 aa6.43□□□□□ -1.38
USP39-213ENST00000467885 KIAA0100Q14667 2235 aaKnown RBP6.43□□□□□ -1.38
USP39-213ENST00000467885 B4GALT3O60512 393 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 DGKIO75912 1065 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 POMCP01189 267 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 HLA-DRAP01903 254 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 THP07101 528 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 PFKMP08237 780 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 FGFR1P11362 822 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 CDC25BP30305 580 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 LRPAP1P30533 357 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 GATMP50440 423 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 GUCY2FP51841 1108 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 PRSS12P56730 875 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 MYL6P60660 151 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 RBP5P82980 135 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 TFAMQ00059 246 aaKnown RBP6.42□□□□□ -1.38
USP39-213ENST00000467885 DCAF17Q5H9S7 520 aaPredicted RBP6.42□□□□□ -1.38
USP39-213ENST00000467885 FIGNQ5HY92 759 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 NOMO2Q5JPE7 1267 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 FKBP15Q5T1M5 1219 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 RASIP1Q5U651 963 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 SPECC1LQ69YQ0 1117 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 GJB7Q6PEY0 223 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 OTOP2Q7RTS6 562 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 LIMS2Q7Z4I7 341 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 USP37Q86T82 979 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 FBXL13Q8NEE6 735 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 HELQQ8TDG4 1101 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 HERVK_113Q902F9 699 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.42□□□□□ -1.384e-6■□□□□ 8
USP39-213ENST00000467885 PI4K2AQ9BTU6 479 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 EDEM3Q9BZQ6 932 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 TTYH3Q9C0H2 523 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 INTS2Q9H0H0 1204 aaKnown RBP6.42□□□□□ -1.38
USP39-213ENST00000467885 RSAD1Q9HA92 442 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 APOBEC3GQ9HC16 384 aaKnown RBP6.42□□□□□ -1.38
USP39-213ENST00000467885 UBE2TQ9NPD8 197 aaPredicted RBP6.42□□□□□ -1.38
USP39-213ENST00000467885 CXXC1Q9P0U4 656 aaPredicted RBP6.42□□□□□ -1.38
USP39-213ENST00000467885 KANSL3Q9P2N6 904 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 ZMYND8Q9ULU4 1186 aaPredicted RBP6.42□□□□□ -1.38
USP39-213ENST00000467885 CAPN11Q9UMQ6 739 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 AGAP1Q9UPQ3 857 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 NUB1Q9Y5A7 615 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 KAT6AQ92794 2004 aa6.42□□□□□ -1.38
USP39-213ENST00000467885 ARID2Q68CP9 1835 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 FOXN3O00409 490 aaPredicted RBP6.41□□□□□ -1.38
USP39-213ENST00000467885 PES1O00541 588 aaKnown RBP6.41□□□□□ -1.38
USP39-213ENST00000467885 PPEF2O14830 753 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 SPTLC1O15269 473 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 UPP2O95045 317 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 STAU1O95793 577 aaKnown RBP6.41□□□□□ -1.38
USP39-213ENST00000467885 EFEMP2O95967 443 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 ASS1P00966 412 aaKnown RBP6.41□□□□□ -1.38
USP39-213ENST00000467885 ALDH2P05091 517 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 TPM2P07951 284 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 FAM163BP0C2L3 166 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 UCHL3P15374 230 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 ATICP31939 592 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 RPL9P32969 192 aaKnown RBP6.41□□□□□ -1.38
USP39-213ENST00000467885 MLH1P40692 756 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 FXR1P51114 621 aaKnown RBP eCLIP6.41□□□□□ -1.38
USP39-213ENST00000467885 SCNN1GP51170 649 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 WDR5P61964 334 aaKnown RBP6.41□□□□□ -1.38
USP39-213ENST00000467885 DEFB103AP81534 67 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 FPGSQ05932 587 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 DSC1Q08554 894 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 LRMPQ12912 555 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 PPIGQ13427 754 aaKnown RBP eCLIP6.41□□□□□ -1.386e-8■□□□□ 9.7
USP39-213ENST00000467885 NCOA4Q13772 614 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 ARID5BQ14865 1188 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 TMEM132DQ14C87 1099 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 UPP1Q16831 310 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 GLRA4Q5JXX5 417 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 C9orf57Q5W0N0 161 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 SPOPLQ6IQ16 392 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 TRIM65Q6PJ69 517 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 DCLRE1AQ6PJP8 1040 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 IRF2BP2Q7Z5L9 587 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.41□□□□□ -1.38
USP39-213ENST00000467885 TMCO2Q7Z6W1 182 aaPredicted RBP6.41□□□□□ -1.38
USP39-213ENST00000467885 NPAS4Q8IUM7 802 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 ARHGEF19Q8IW93 802 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 COLGALT2Q8IYK4 626 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 HACE1Q8IYU2 909 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 TC2NQ8N9U0 490 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 RNF169Q8NCN4 708 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 CPLX3Q8WVH0 158 aa6.41□□□□□ -1.38
USP39-213ENST00000467885 BAP1Q92560 729 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms