RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 EPM2AIP1Q7L775 607 aaPredicted RBP14.16□□□□□ -0.14
COL28A1-206ENST00000465339 LNX1Q8TBB1 728 aaPredicted RBP14.16□□□□□ -0.14
COL28A1-206ENST00000465339 HDAC7Q8WUI4 952 aa14.16□□□□□ -0.14
COL28A1-206ENST00000465339 HPS3Q969F9 1004 aa14.16□□□□□ -0.14
COL28A1-206ENST00000465339 CCDC34Q96HJ3 373 aa14.16□□□□□ -0.14
COL28A1-206ENST00000465339 FBXL18Q96ME1 805 aa14.16□□□□□ -0.14
COL28A1-206ENST00000465339 GDPD2Q9HCC8 539 aa14.16□□□□□ -0.14
COL28A1-206ENST00000465339 USP15Q9Y4E8 981 aaPredicted RBP14.16□□□□□ -0.14
COL28A1-206ENST00000465339 NUB1Q9Y5A7 615 aa14.16□□□□□ -0.14
COL28A1-206ENST00000465339 PLXNA3P51805 1871 aa14.16□□□□□ -0.14
COL28A1-206ENST00000465339 UBE4BO95155 1302 aa14.15□□□□□ -0.14
COL28A1-206ENST00000465339 IL18RAPO95256 599 aa14.15□□□□□ -0.14
COL28A1-206ENST00000465339 SNRPFP62306 86 aaKnown RBP14.15□□□□□ -0.14
COL28A1-206ENST00000465339 PSMD5Q16401 504 aa14.15□□□□□ -0.14
COL28A1-206ENST00000465339 SPATA1Q5VX52 437 aa14.15□□□□□ -0.14
COL28A1-206ENST00000465339 KANK3Q6NY19 840 aa14.15□□□□□ -0.14
COL28A1-206ENST00000465339 CRELD2Q6UXH1 353 aaPredicted RBP14.15□□□□□ -0.14
COL28A1-206ENST00000465339 KRBA2Q6ZNG9 492 aa14.15□□□□□ -0.14
COL28A1-206ENST00000465339 NT5DC4Q86YG4 428 aa14.15□□□□□ -0.14
COL28A1-206ENST00000465339 HOMEZQ8IX15 550 aa14.15□□□□□ -0.14
COL28A1-206ENST00000465339 GRAMD1CQ8IYS0 662 aa14.15□□□□□ -0.14
COL28A1-206ENST00000465339 C3orf58Q8NDZ4 430 aa14.15□□□□□ -0.14
COL28A1-206ENST00000465339 GLIS3Q8NEA6 775 aa14.15□□□□□ -0.14
COL28A1-206ENST00000465339 BEST2Q8NFU1 509 aa14.15□□□□□ -0.14
COL28A1-206ENST00000465339 NECAB3Q96P71 396 aaPredicted RBP14.15□□□□□ -0.14
COL28A1-206ENST00000465339 POP1Q99575 1024 aaKnown RBP14.15□□□□□ -0.14
COL28A1-206ENST00000465339 FAM213AQ9BRX8 229 aa14.15□□□□□ -0.14
COL28A1-206ENST00000465339 ADAM7Q9H2U9 754 aa14.15□□□□□ -0.14
COL28A1-206ENST00000465339 TUBGCP4Q9UGJ1 667 aa14.15□□□□□ -0.14
COL28A1-206ENST00000465339 C2CD2Q9Y426 696 aa14.15□□□□□ -0.14
COL28A1-206ENST00000465339 SYN3O14994 580 aa14.14□□□□□ -0.15
COL28A1-206ENST00000465339 KLRC4O43908 158 aa14.14□□□□□ -0.15
COL28A1-206ENST00000465339 EXTL3O43909 919 aa14.14□□□□□ -0.15
COL28A1-206ENST00000465339 ZNF202O95125 648 aa14.14□□□□□ -0.15
COL28A1-206ENST00000465339 GLUD1P00367 558 aa14.14□□□□□ -0.15
COL28A1-206ENST00000465339 IGFBP6P24592 240 aaPredicted RBP14.14□□□□□ -0.15
COL28A1-206ENST00000465339 HOXD13P35453 343 aa14.14□□□□□ -0.15
COL28A1-206ENST00000465339 ANP32AP39687 249 aaKnown RBP14.14□□□□□ -0.15
COL28A1-206ENST00000465339 BRCC3P46736 316 aa14.14□□□□□ -0.15
COL28A1-206ENST00000465339 TMEM132DQ14C87 1099 aa14.14□□□□□ -0.15
COL28A1-206ENST00000465339 JADE1Q6IE81 842 aa14.14□□□□□ -0.15
COL28A1-206ENST00000465339 ARMCX5Q6P1M9 558 aa14.14□□□□□ -0.15
COL28A1-206ENST00000465339 PRSS55Q6UWB4 352 aaPredicted RBP14.14□□□□□ -0.15
COL28A1-206ENST00000465339 ANKS3Q6ZW76 656 aa14.14□□□□□ -0.15
COL28A1-206ENST00000465339 ADHFE1Q8IWW8 467 aa14.14□□□□□ -0.15
COL28A1-206ENST00000465339 GPD1LQ8N335 351 aa14.14□□□□□ -0.15
COL28A1-206ENST00000465339 SCFD1Q8WVM8 642 aa14.14□□□□□ -0.15
COL28A1-206ENST00000465339 SUSD6Q92537 303 aa14.14□□□□□ -0.15
COL28A1-206ENST00000465339 CCDC47Q96A33 483 aaKnown RBP14.14□□□□□ -0.15
COL28A1-206ENST00000465339 SUSD3Q96L08 255 aa14.14□□□□□ -0.15
COL28A1-206ENST00000465339 GOLPH3LQ9H4A5 285 aa14.14□□□□□ -0.15
COL28A1-206ENST00000465339 PLEKHA4Q9H4M7 779 aa14.14□□□□□ -0.15
COL28A1-206ENST00000465339 KIAA1586Q9HCI6 787 aa14.14□□□□□ -0.15
COL28A1-206ENST00000465339 SLC39A2Q9NP94 309 aa14.14□□□□□ -0.15
COL28A1-206ENST00000465339 EXOC1Q9NV70 894 aa14.14□□□□□ -0.15
COL28A1-206ENST00000465339 CGNQ9P2M7 1197 aaKnown RBP14.14□□□□□ -0.15
COL28A1-206ENST00000465339 BACE2Q9Y5Z0 518 aa14.14□□□□□ -0.15
COL28A1-206ENST00000465339 I3L4J1 428 aa14.13□□□□□ -0.15
COL28A1-206ENST00000465339 MCM4P33991 863 aa14.13□□□□□ -0.15
COL28A1-206ENST00000465339 MTHFRP42898 656 aa14.13□□□□□ -0.15
COL28A1-206ENST00000465339 CBX2Q14781 532 aaPredicted RBP14.13□□□□□ -0.15
COL28A1-206ENST00000465339 BMT2Q1RMZ1 405 aa14.13□□□□□ -0.15
COL28A1-206ENST00000465339 ATAT1Q5SQI0 421 aa14.13□□□□□ -0.15
COL28A1-206ENST00000465339 LILRA6Q6PI73 481 aa14.13□□□□□ -0.15
COL28A1-206ENST00000465339 CYP26C1Q6V0L0 522 aa14.13□□□□□ -0.15
COL28A1-206ENST00000465339 HS2ST1Q7LGA3 356 aa14.13□□□□□ -0.15
COL28A1-206ENST00000465339 PALB2Q86YC2 1186 aa14.13□□□□□ -0.15
COL28A1-206ENST00000465339 GJD3Q8N144 294 aa14.13□□□□□ -0.15
COL28A1-206ENST00000465339 SAAL1Q96ER3 474 aa14.13□□□□□ -0.15
COL28A1-206ENST00000465339 RIPOR3Q96MK2 946 aa14.13□□□□□ -0.15
COL28A1-206ENST00000465339 NECTIN4Q96NY8 510 aa14.13□□□□□ -0.15
COL28A1-206ENST00000465339 CLSTN3Q9BQT9 956 aa14.13□□□□□ -0.15
COL28A1-206ENST00000465339 CBWD1Q9BRT8 395 aa14.13□□□□□ -0.15
COL28A1-206ENST00000465339 APOL5Q9BWW9 433 aa14.13□□□□□ -0.15
COL28A1-206ENST00000465339 PHF7Q9BWX1 381 aaPredicted RBP14.13□□□□□ -0.15
COL28A1-206ENST00000465339 PCIF1Q9H4Z3 704 aa14.13□□□□□ -0.15
COL28A1-206ENST00000465339 SFXN1Q9H9B4 322 aa14.13□□□□□ -0.15
COL28A1-206ENST00000465339 MTRRQ9UBK8 725 aa14.13□□□□□ -0.15
COL28A1-206ENST00000465339 SPTBN5Q9NRC6 3674 aaKnown RBP14.12□□□□□ -0.15
COL28A1-206ENST00000465339 ZNF233A6NK53 670 aa14.12□□□□□ -0.15
COL28A1-206ENST00000465339 H7C4K7 107 aa14.12□□□□□ -0.15
COL28A1-206ENST00000465339 TGFB1I1O43294 461 aa14.12□□□□□ -0.15
COL28A1-206ENST00000465339 TGM5O43548 720 aa14.12□□□□□ -0.15
COL28A1-206ENST00000465339 RPN1P04843 607 aaKnown RBP14.12□□□□□ -0.15
COL28A1-206ENST00000465339 NFICP08651 508 aa14.12□□□□□ -0.15
COL28A1-206ENST00000465339 RPL17P18621 184 aaKnown RBP14.12□□□□□ -0.15
COL28A1-206ENST00000465339 TKTP29401 623 aaKnown RBP14.12□□□□□ -0.15
COL28A1-206ENST00000465339 SSTR3P32745 418 aaPredicted RBP14.12□□□□□ -0.15
COL28A1-206ENST00000465339 ZP2Q05996 745 aa14.12□□□□□ -0.15
COL28A1-206ENST00000465339 RAB33AQ14088 237 aa14.12□□□□□ -0.15
COL28A1-206ENST00000465339 KNOP1Q1ED39 458 aaKnown RBP14.12□□□□□ -0.15
COL28A1-206ENST00000465339 KMT5BQ4FZB7 885 aa14.12□□□□□ -0.15
COL28A1-206ENST00000465339 RARS2Q5T160 578 aaKnown RBP14.12□□□□□ -0.15
COL28A1-206ENST00000465339 C9orf57Q5W0N0 161 aa14.12□□□□□ -0.15
COL28A1-206ENST00000465339 C15orf39Q6ZRI6 1047 aa14.12□□□□□ -0.15
COL28A1-206ENST00000465339 GLYCTKQ8IVS8 523 aa14.12□□□□□ -0.15
COL28A1-206ENST00000465339 BRSK2Q8IWQ3 736 aa14.12□□□□□ -0.15
COL28A1-206ENST00000465339 C12orf76Q8N812 135 aaPredicted RBP14.12□□□□□ -0.15
COL28A1-206ENST00000465339 APPL2Q8NEU8 664 aa14.12□□□□□ -0.15
COL28A1-206ENST00000465339 CMASQ8NFW8 434 aaPredicted RBP14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms