RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 EIF3DO15371 548 aaKnown RBP eCLIP19.28■□□□□ 0.68
COL7A1-205ENST00000465238 GALR2O43603 387 aaPredicted RBP19.28■□□□□ 0.68
COL7A1-205ENST00000465238 RECQL4O94761 1208 aa19.28■□□□□ 0.68
COL7A1-205ENST00000465238 SPATA31D3P0C874 917 aa19.28■□□□□ 0.68
COL7A1-205ENST00000465238 MCL1Q07820 350 aa19.28■□□□□ 0.68
COL7A1-205ENST00000465238 ASTLQ6HA08 431 aaPredicted RBP19.28■□□□□ 0.68
COL7A1-205ENST00000465238 SLFN12LQ6IEE8 588 aa19.28■□□□□ 0.68
COL7A1-205ENST00000465238 LILRA6Q6PI73 481 aa19.28■□□□□ 0.68
COL7A1-205ENST00000465238 SPATA31D4Q6ZUB0 917 aa19.28■□□□□ 0.68
COL7A1-205ENST00000465238 ZNF707Q96C28 371 aaPredicted RBP19.28■□□□□ 0.68
COL7A1-205ENST00000465238 PAAF1Q9BRP4 392 aa19.28■□□□□ 0.68
COL7A1-205ENST00000465238 DUSP12Q9UNI6 340 aa19.28■□□□□ 0.68
COL7A1-205ENST00000465238 USP34Q70CQ2 3546 aa19.28■□□□□ 0.68
COL7A1-205ENST00000465238 ZFHX2Q9C0A1 2572 aaPredicted RBP19.28■□□□□ 0.68
COL7A1-205ENST00000465238 DOCK8Q8NF50 2099 aa19.28■□□□□ 0.68
COL7A1-205ENST00000465238 CASTOR2A6NHX0 329 aa19.27■□□□□ 0.68
COL7A1-205ENST00000465238 ANKRD63C9JTQ0 380 aa19.27■□□□□ 0.68
COL7A1-205ENST00000465238 ABLIM1O14639 778 aa19.27■□□□□ 0.68
COL7A1-205ENST00000465238 N4BP1O75113 896 aaKnown RBP19.27■□□□□ 0.68
COL7A1-205ENST00000465238 SMC2O95347 1197 aa19.27■□□□□ 0.68
COL7A1-205ENST00000465238 GBP2P32456 591 aaPredicted RBP19.27■□□□□ 0.68
COL7A1-205ENST00000465238 GRM5P41594 1212 aa19.27■□□□□ 0.68
COL7A1-205ENST00000465238 CLCN5P51795 746 aa19.27■□□□□ 0.68
COL7A1-205ENST00000465238 YARSP54577 528 aaKnown RBP19.27■□□□□ 0.68
COL7A1-205ENST00000465238 OSTNP61366 133 aa19.27■□□□□ 0.68
COL7A1-205ENST00000465238 KCNA1Q09470 495 aa19.27■□□□□ 0.68
COL7A1-205ENST00000465238 ELAVL2Q12926 359 aaKnown RBP19.27■□□□□ 0.68
COL7A1-205ENST00000465238 PNOCQ13519 176 aa19.27■□□□□ 0.68
COL7A1-205ENST00000465238 RTP2Q5QGT7 225 aa19.27■□□□□ 0.68
COL7A1-205ENST00000465238 GLYCTKQ8IVS8 523 aa19.27■□□□□ 0.68
COL7A1-205ENST00000465238 ELOA2Q8IYF1 753 aaPredicted RBP19.27■□□□□ 0.68
COL7A1-205ENST00000465238 TMEM105Q8N8V8 129 aa19.27■□□□□ 0.68
COL7A1-205ENST00000465238 GLIS3Q8NEA6 775 aa19.27■□□□□ 0.68
COL7A1-205ENST00000465238 ZNF507Q8TCN5 953 aa19.27■□□□□ 0.68
COL7A1-205ENST00000465238 TTPALQ9BTX7 342 aa19.27■□□□□ 0.68
COL7A1-205ENST00000465238 PIDD1Q9HB75 910 aa19.27■□□□□ 0.68
COL7A1-205ENST00000465238 CACNG4Q9UBN1 327 aa19.27■□□□□ 0.68
COL7A1-205ENST00000465238 KIF4AO95239 1232 aa19.26■□□□□ 0.67
COL7A1-205ENST00000465238 RPL17P18621 184 aaKnown RBP19.26■□□□□ 0.67
COL7A1-205ENST00000465238 NAB2Q15742 525 aa19.26■□□□□ 0.67
COL7A1-205ENST00000465238 KYAT1Q16773 422 aa19.26■□□□□ 0.67
COL7A1-205ENST00000465238 FAM171A1Q5VUB5 890 aa19.26■□□□□ 0.67
COL7A1-205ENST00000465238 SLC39A4Q6P5W5 647 aa19.26■□□□□ 0.67
COL7A1-205ENST00000465238 PDXDC1Q6P996 788 aa19.26■□□□□ 0.67
COL7A1-205ENST00000465238 PRSS55Q6UWB4 352 aaPredicted RBP19.26■□□□□ 0.67
COL7A1-205ENST00000465238 EPM2AIP1Q7L775 607 aaPredicted RBP19.26■□□□□ 0.67
COL7A1-205ENST00000465238 CEP120Q8N960 986 aa19.26■□□□□ 0.67
COL7A1-205ENST00000465238 HASPINQ8TF76 798 aa19.26■□□□□ 0.67
COL7A1-205ENST00000465238 PIK3R5Q8WYR1 880 aa19.26■□□□□ 0.67
COL7A1-205ENST00000465238 ATOH1Q92858 354 aaPredicted RBP19.26■□□□□ 0.67
COL7A1-205ENST00000465238 ACAP3Q96P50 834 aa19.26■□□□□ 0.67
COL7A1-205ENST00000465238 MSTO1Q9BUK6 570 aa19.26■□□□□ 0.67
COL7A1-205ENST00000465238 PRKD2Q9BZL6 878 aa19.26■□□□□ 0.67
COL7A1-205ENST00000465238 TOPORSQ9NS56 1045 aaPredicted RBP19.26■□□□□ 0.67
COL7A1-205ENST00000465238 EPS15L1Q9UBC2 864 aa19.26■□□□□ 0.67
COL7A1-205ENST00000465238 TRIP11Q15643 1979 aa19.26■□□□□ 0.67
COL7A1-205ENST00000465238 UBE4BO95155 1302 aa19.25■□□□□ 0.67
COL7A1-205ENST00000465238 CITO14578 2027 aa19.25■□□□□ 0.67
COL7A1-205ENST00000465238 A0A0B4J269 797 aa19.25■□□□□ 0.67
COL7A1-205ENST00000465238 OGTO15294 1046 aa19.25■□□□□ 0.67
COL7A1-205ENST00000465238 ZMYND10O75800 440 aa19.25■□□□□ 0.67
COL7A1-205ENST00000465238 RHOBTB3O94955 611 aa19.25■□□□□ 0.67
COL7A1-205ENST00000465238 STK4Q13043 487 aa19.25■□□□□ 0.67
COL7A1-205ENST00000465238 KCNB1Q14721 858 aa19.25■□□□□ 0.67
COL7A1-205ENST00000465238 POMGNT1Q8WZA1 660 aa19.25■□□□□ 0.67
COL7A1-205ENST00000465238 NXPE3Q969Y0 559 aa19.25■□□□□ 0.67
COL7A1-205ENST00000465238 HAPLN2Q9GZV7 340 aa19.25■□□□□ 0.67
COL7A1-205ENST00000465238 IKZF4Q9H2S9 585 aa19.25■□□□□ 0.67
COL7A1-205ENST00000465238 LMBRD1Q9NUN5 540 aa19.25■□□□□ 0.67
COL7A1-205ENST00000465238 FAM86C1Q9NVL1 165 aa19.25■□□□□ 0.67
COL7A1-205ENST00000465238 RMND1Q9NWS8 449 aa19.25■□□□□ 0.67
COL7A1-205ENST00000465238 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.25■□□□□ 0.67
COL7A1-205ENST00000465238 STYXL1Q9Y6J8 313 aa19.25■□□□□ 0.67
COL7A1-205ENST00000465238 TISP43B9A030 160 aa19.24■□□□□ 0.67
COL7A1-205ENST00000465238 H0Y858 1186 aa19.24■□□□□ 0.67
COL7A1-205ENST00000465238 CLTAP09496 248 aa19.24■□□□□ 0.67
COL7A1-205ENST00000465238 PSMD5Q16401 504 aa19.24■□□□□ 0.67
COL7A1-205ENST00000465238 SEZ6Q53EL9 994 aa19.24■□□□□ 0.67
COL7A1-205ENST00000465238 CEP57Q86XR8 500 aa19.24■□□□□ 0.67
COL7A1-205ENST00000465238 NELFCDQ8IXH7 590 aa19.24■□□□□ 0.67
COL7A1-205ENST00000465238 LNX1Q8TBB1 728 aaPredicted RBP19.24■□□□□ 0.67
COL7A1-205ENST00000465238 SCFD1Q8WVM8 642 aa19.24■□□□□ 0.67
COL7A1-205ENST00000465238 SMARCE1Q969G3 411 aa19.24■□□□□ 0.67
COL7A1-205ENST00000465238 GSDMAQ96QA5 445 aa19.24■□□□□ 0.67
COL7A1-205ENST00000465238 MYADMQ96S97 322 aa19.24■□□□□ 0.67
COL7A1-205ENST00000465238 CLSTN3Q9BQT9 956 aa19.24■□□□□ 0.67
COL7A1-205ENST00000465238 CXCL16Q9H2A7 254 aa19.24■□□□□ 0.67
COL7A1-205ENST00000465238 FBXW11Q9UKB1 542 aa19.24■□□□□ 0.67
COL7A1-205ENST00000465238 FBXL21Q9UKT6 434 aa19.24■□□□□ 0.67
COL7A1-205ENST00000465238 AGO2Q9UKV8 859 aaKnown RBP19.24■□□□□ 0.67
COL7A1-205ENST00000465238 VWA8A3KMH1 1905 aa19.23■□□□□ 0.67
COL7A1-205ENST00000465238 TMEM189-UBE2V1I3L0A0 370 aa19.23■□□□□ 0.67
COL7A1-205ENST00000465238 KIF20AO95235 890 aa19.23■□□□□ 0.67
COL7A1-205ENST00000465238 GARTP22102 1010 aa19.23■□□□□ 0.67
COL7A1-205ENST00000465238 LIN9Q5TKA1 542 aa19.23■□□□□ 0.67
COL7A1-205ENST00000465238 KIAA0895Q8NCT3 520 aa19.23■□□□□ 0.67
COL7A1-205ENST00000465238 FLCNQ8NFG4 579 aa19.23■□□□□ 0.67
COL7A1-205ENST00000465238 PCDHA5Q9Y5H7 936 aa19.23■□□□□ 0.67
COL7A1-205ENST00000465238 HNRNPA1P09651 372 aaKnown RBP eCLIP19.22■□□□□ 0.67
COL7A1-205ENST00000465238 LAMP2P13473 410 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms