RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 ZCWPW2Q504Y3 356 aa24.7■■□□□ 1.54
CCDC28B-203ENST00000461819 RTP2Q5QGT7 225 aa24.7■■□□□ 1.54
CCDC28B-203ENST00000461819 KIAA0319Q5VV43 1072 aa24.7■■□□□ 1.54
CCDC28B-203ENST00000461819 WDR49Q8IV35 697 aa24.7■■□□□ 1.54
CCDC28B-203ENST00000461819 EFHBQ8N7U6 833 aa24.7■■□□□ 1.54
CCDC28B-203ENST00000461819 TRIML1Q8N9V2 468 aa24.7■■□□□ 1.54
CCDC28B-203ENST00000461819 GPT2Q8TD30 523 aa24.7■■□□□ 1.54
CCDC28B-203ENST00000461819 PABPC5Q96DU9 382 aaKnown RBP24.7■■□□□ 1.54
CCDC28B-203ENST00000461819 MTMR12Q9C0I1 747 aa24.7■■□□□ 1.54
CCDC28B-203ENST00000461819 THEGQ9P2T0 379 aa24.7■■□□□ 1.54
CCDC28B-203ENST00000461819 COG5Q9UP83 839 aa24.7■■□□□ 1.54
CCDC28B-203ENST00000461819 PLXNA3P51805 1871 aa24.7■■□□□ 1.54
CCDC28B-203ENST00000461819 LINC01565O15544 149 aa24.69■■□□□ 1.54
CCDC28B-203ENST00000461819 SRGAP2BP0DMP2 458 aa24.69■■□□□ 1.54
CCDC28B-203ENST00000461819 TKTP29401 623 aaKnown RBP24.69■■□□□ 1.54
CCDC28B-203ENST00000461819 CASP4P49662 377 aa24.69■■□□□ 1.54
CCDC28B-203ENST00000461819 EDRF1Q3B7T1 1238 aa24.69■■□□□ 1.54
CCDC28B-203ENST00000461819 LLGL2Q6P1M3 1020 aa24.69■■□□□ 1.54
CCDC28B-203ENST00000461819 PDXDC1Q6P996 788 aa24.69■■□□□ 1.54
CCDC28B-203ENST00000461819 FAM84AQ96KN4 292 aa24.69■■□□□ 1.54
CCDC28B-203ENST00000461819 MFSD14AQ96MC6 490 aa24.69■■□□□ 1.54
CCDC28B-203ENST00000461819 CGRRF1Q99675 332 aa24.69■■□□□ 1.54
CCDC28B-203ENST00000461819 UBE2ZQ9H832 354 aaPredicted RBP24.69■■□□□ 1.54
CCDC28B-203ENST00000461819 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP24.69■■□□□ 1.54
CCDC28B-203ENST00000461819 INTS13Q9NVM9 706 aa24.69■■□□□ 1.54
CCDC28B-203ENST00000461819 BRWD1Q9NSI6 2320 aa24.68■■□□□ 1.54
CCDC28B-203ENST00000461819 PTPRJQ12913 1337 aa24.68■■□□□ 1.54
CCDC28B-203ENST00000461819 ANO9A1A5B4 782 aa24.68■■□□□ 1.54
CCDC28B-203ENST00000461819 LILRB3O75022 631 aa24.68■■□□□ 1.54
CCDC28B-203ENST00000461819 CLASP2O75122 1294 aaKnown RBP24.68■■□□□ 1.54
CCDC28B-203ENST00000461819 MBD3O95983 291 aa24.68■■□□□ 1.54
CCDC28B-203ENST00000461819 ITGB3P05106 788 aa24.68■■□□□ 1.54
CCDC28B-203ENST00000461819 KRT19P08727 400 aa24.68■■□□□ 1.54
CCDC28B-203ENST00000461819 CNPP09543 421 aaKnown RBP24.68■■□□□ 1.54
CCDC28B-203ENST00000461819 BMP6P22004 513 aa24.68■■□□□ 1.54
CCDC28B-203ENST00000461819 FGFR3P22607 806 aa24.68■■□□□ 1.54
CCDC28B-203ENST00000461819 KLRC2P26717 231 aa24.68■■□□□ 1.54
CCDC28B-203ENST00000461819 NDUFV1P49821 464 aa24.68■■□□□ 1.54
CCDC28B-203ENST00000461819 ADAM9Q13443 819 aa24.68■■□□□ 1.54
CCDC28B-203ENST00000461819 PSMD5Q16401 504 aa24.68■■□□□ 1.54
CCDC28B-203ENST00000461819 DUOXA2Q1HG44 320 aa24.68■■□□□ 1.54
CCDC28B-203ENST00000461819 CENPPQ6IPU0 288 aa24.68■■□□□ 1.54
CCDC28B-203ENST00000461819 KLHL10Q6JEL2 608 aa24.68■■□□□ 1.54
CCDC28B-203ENST00000461819 PRSS55Q6UWB4 352 aaPredicted RBP24.68■■□□□ 1.54
CCDC28B-203ENST00000461819 DSTYKQ6XUX3 929 aa24.68■■□□□ 1.54
CCDC28B-203ENST00000461819 DHTKD1Q96HY7 919 aaPredicted RBP24.68■■□□□ 1.54
CCDC28B-203ENST00000461819 SUSD3Q96L08 255 aa24.68■■□□□ 1.54
CCDC28B-203ENST00000461819 ZNF560Q96MR9 790 aa24.68■■□□□ 1.54
CCDC28B-203ENST00000461819 KLHL5Q96PQ7 755 aa24.68■■□□□ 1.54
CCDC28B-203ENST00000461819 ITGA11Q9UKX5 1188 aa24.68■■□□□ 1.54
CCDC28B-203ENST00000461819 R3HCC1Q9Y3T6 440 aaKnown RBP24.68■■□□□ 1.54
CCDC28B-203ENST00000461819 TSC2P49815 1807 aa24.68■■□□□ 1.54
CCDC28B-203ENST00000461819 PIRO00625 290 aa24.67■■□□□ 1.54
CCDC28B-203ENST00000461819 ADH1AP07327 375 aa24.67■■□□□ 1.54
CCDC28B-203ENST00000461819 CD44P16070 742 aaKnown RBP24.67■■□□□ 1.54
CCDC28B-203ENST00000461819 POLR2BP30876 1174 aaKnown RBP24.67■■□□□ 1.54
CCDC28B-203ENST00000461819 LRRC63Q05C16 580 aa24.67■■□□□ 1.54
CCDC28B-203ENST00000461819 ADAM15Q13444 863 aa24.67■■□□□ 1.54
CCDC28B-203ENST00000461819 COL19A1Q14993 1142 aa24.67■■□□□ 1.54
CCDC28B-203ENST00000461819 GPR65Q8IYL9 337 aa24.67■■□□□ 1.54
CCDC28B-203ENST00000461819 CSGALNACT2Q8N6G5 542 aa24.67■■□□□ 1.54
CCDC28B-203ENST00000461819 C1orf127Q8N9H9 656 aa24.67■■□□□ 1.54
CCDC28B-203ENST00000461819 OR5B17Q8NGF7 314 aa24.67■■□□□ 1.54
CCDC28B-203ENST00000461819 PIK3R5Q8WYR1 880 aa24.67■■□□□ 1.54
CCDC28B-203ENST00000461819 TRIM49BA6NDI0 452 aa24.66■■□□□ 1.54
CCDC28B-203ENST00000461819 SYN3O14994 580 aa24.66■■□□□ 1.54
CCDC28B-203ENST00000461819 TEX28O15482 410 aa24.66■■□□□ 1.54
CCDC28B-203ENST00000461819 RPL17P18621 184 aaKnown RBP24.66■■□□□ 1.54
CCDC28B-203ENST00000461819 KCNA5P22460 613 aa24.66■■□□□ 1.54
CCDC28B-203ENST00000461819 CCNE1P24864 410 aa24.66■■□□□ 1.54
CCDC28B-203ENST00000461819 TAF6P49848 677 aa24.66■■□□□ 1.54
CCDC28B-203ENST00000461819 LILRA4P59901 499 aa24.66■■□□□ 1.54
CCDC28B-203ENST00000461819 CTC1Q2NKJ3 1217 aa24.66■■□□□ 1.54
CCDC28B-203ENST00000461819 SV2CQ496J9 727 aa24.66■■□□□ 1.54
CCDC28B-203ENST00000461819 ANKRD40Q6AI12 368 aa24.66■■□□□ 1.54
CCDC28B-203ENST00000461819 ANKS3Q6ZW76 656 aa24.66■■□□□ 1.54
CCDC28B-203ENST00000461819 PPFIBP1Q86W92 1011 aa24.66■■□□□ 1.54
CCDC28B-203ENST00000461819 GLYCTKQ8IVS8 523 aa24.66■■□□□ 1.54
CCDC28B-203ENST00000461819 FAM186BQ8IYM0 893 aa24.66■■□□□ 1.54
CCDC28B-203ENST00000461819 POP1Q99575 1024 aaKnown RBP24.66■■□□□ 1.54
CCDC28B-203ENST00000461819 RXFP1Q9HBX9 757 aa24.66■■□□□ 1.54
CCDC28B-203ENST00000461819 PCDHB8Q9UN66 801 aa24.66■■□□□ 1.54
CCDC28B-203ENST00000461819 AGAP1Q9UPQ3 857 aa24.66■■□□□ 1.54
CCDC28B-203ENST00000461819 CTNND2Q9UQB3 1225 aa24.66■■□□□ 1.54
CCDC28B-203ENST00000461819 HCFC2Q9Y5Z7 792 aa24.66■■□□□ 1.54
CCDC28B-203ENST00000461819 CETN3O15182 167 aa24.65■■□□□ 1.54
CCDC28B-203ENST00000461819 AKAP3O75969 853 aa24.65■■□□□ 1.54
CCDC28B-203ENST00000461819 GLP2RO95838 553 aa24.65■■□□□ 1.54
CCDC28B-203ENST00000461819 PAX3P23760 479 aa24.65■■□□□ 1.54
CCDC28B-203ENST00000461819 PSMC2P35998 433 aaKnown RBP24.65■■□□□ 1.54
CCDC28B-203ENST00000461819 PNPLA4P41247 253 aa24.65■■□□□ 1.54
CCDC28B-203ENST00000461819 PMS1P54277 932 aaKnown RBP24.65■■□□□ 1.54
CCDC28B-203ENST00000461819 RBM10P98175 930 aaKnown RBP24.65■■□□□ 1.54
CCDC28B-203ENST00000461819 USP37Q86T82 979 aa24.65■■□□□ 1.54
CCDC28B-203ENST00000461819 APPL2Q8NEU8 664 aa24.65■■□□□ 1.54
CCDC28B-203ENST00000461819 VN1R2Q8NFZ6 395 aa24.65■■□□□ 1.54
CCDC28B-203ENST00000461819 LNX1Q8TBB1 728 aaPredicted RBP24.65■■□□□ 1.54
CCDC28B-203ENST00000461819 NELFBQ8WX92 580 aa24.65■■□□□ 1.54
CCDC28B-203ENST00000461819 EEF2KMTQ96G04 330 aa24.65■■□□□ 1.54
CCDC28B-203ENST00000461819 FNIP2Q9P278 1114 aa24.65■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms