RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 ACOT2P49753 483 aa23.06■■□□□ 1.28
HMGB3-205ENST00000455596 ALCAMQ13740 583 aa23.06■■□□□ 1.28
HMGB3-205ENST00000455596 PKP1Q13835 747 aa23.06■■□□□ 1.28
HMGB3-205ENST00000455596 POSTNQ15063 836 aa23.06■■□□□ 1.28
HMGB3-205ENST00000455596 E2F4Q16254 413 aa23.06■■□□□ 1.28
HMGB3-205ENST00000455596 UVSSAQ2YD98 709 aa23.06■■□□□ 1.28
HMGB3-205ENST00000455596 JADE1Q6IE81 842 aa23.06■■□□□ 1.28
HMGB3-205ENST00000455596 SLC8B1Q6J4K2 584 aa23.06■■□□□ 1.28
HMGB3-205ENST00000455596 SHC4Q6S5L8 630 aa23.06■■□□□ 1.28
HMGB3-205ENST00000455596 RTL10Q7L3V2 364 aa23.06■■□□□ 1.28
HMGB3-205ENST00000455596 CCDC65Q8IXS2 484 aa23.06■■□□□ 1.28
HMGB3-205ENST00000455596 APPL2Q8NEU8 664 aa23.06■■□□□ 1.28
HMGB3-205ENST00000455596 BEST2Q8NFU1 509 aa23.06■■□□□ 1.28
HMGB3-205ENST00000455596 SLC7A14Q8TBB6 771 aa23.06■■□□□ 1.28
HMGB3-205ENST00000455596 ASIC4Q96FT7 647 aa23.06■■□□□ 1.28
HMGB3-205ENST00000455596 CFAP45Q9UL16 551 aa23.06■■□□□ 1.28
HMGB3-205ENST00000455596 PCDHB8Q9UN66 801 aa23.06■■□□□ 1.28
HMGB3-205ENST00000455596 PCDHB13Q9Y5F0 798 aa23.06■■□□□ 1.28
HMGB3-205ENST00000455596 SCN1AP35498 2009 aa23.05■■□□□ 1.28
HMGB3-205ENST00000455596 NOTCH4Q99466 2003 aa23.05■■□□□ 1.28
HMGB3-205ENST00000455596 XYLBO75191 536 aa23.05■■□□□ 1.28
HMGB3-205ENST00000455596 ROR1Q01973 937 aa23.05■■□□□ 1.28
HMGB3-205ENST00000455596 KCNA1Q09470 495 aa23.05■■□□□ 1.28
HMGB3-205ENST00000455596 MRPL58Q14197 206 aaKnown RBP23.05■■□□□ 1.28
HMGB3-205ENST00000455596 SPATA1Q5VX52 437 aa23.05■■□□□ 1.28
HMGB3-205ENST00000455596 TMEM130Q8N3G9 435 aa23.05■■□□□ 1.28
HMGB3-205ENST00000455596 IQUBQ8NA54 791 aa23.05■■□□□ 1.28
HMGB3-205ENST00000455596 ZNF461Q8TAF7 563 aa23.05■■□□□ 1.28
HMGB3-205ENST00000455596 DHX58Q96C10 678 aa23.05■■□□□ 1.28
HMGB3-205ENST00000455596 IKZF4Q9H2S9 585 aa23.05■■□□□ 1.28
HMGB3-205ENST00000455596 ASB7Q9H672 318 aa23.05■■□□□ 1.28
HMGB3-205ENST00000455596 DERAQ9Y315 318 aa23.05■■□□□ 1.28
HMGB3-205ENST00000455596 TSC2P49815 1807 aa23.05■■□□□ 1.28
HMGB3-205ENST00000455596 CCL16O15467 120 aa23.04■■□□□ 1.28
HMGB3-205ENST00000455596 TBC1D4O60343 1298 aa23.04■■□□□ 1.28
HMGB3-205ENST00000455596 N4BP1O75113 896 aaKnown RBP23.04■■□□□ 1.28
HMGB3-205ENST00000455596 CASP5P51878 434 aa23.04■■□□□ 1.28
HMGB3-205ENST00000455596 AMPD3Q01432 767 aa23.04■■□□□ 1.28
HMGB3-205ENST00000455596 POU5F1Q01860 360 aaKnown RBP23.04■■□□□ 1.28
HMGB3-205ENST00000455596 TMEM132DQ14C87 1099 aa23.04■■□□□ 1.28
HMGB3-205ENST00000455596 CTXN3Q4LDR2 81 aa23.04■■□□□ 1.28
HMGB3-205ENST00000455596 ZNF280DQ6N043 979 aa23.04■■□□□ 1.28
HMGB3-205ENST00000455596 GET4Q7L5D6 327 aaPredicted RBP23.04■■□□□ 1.28
HMGB3-205ENST00000455596 GRASPQ7Z6J2 395 aaPredicted RBP23.04■■□□□ 1.28
HMGB3-205ENST00000455596 SYCP3Q8IZU3 236 aa23.04■■□□□ 1.28
HMGB3-205ENST00000455596 KBTBD4Q9NVX7 518 aa23.04■■□□□ 1.28
HMGB3-205ENST00000455596 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP23.04■■□□□ 1.28
HMGB3-205ENST00000455596 FBXL5Q9UKA1 691 aa23.04■■□□□ 1.28
HMGB3-205ENST00000455596 POLIQ9UNA4 740 aa23.04■■□□□ 1.28
HMGB3-205ENST00000455596 WDR27A2RRH5 827 aa23.03■■□□□ 1.28
HMGB3-205ENST00000455596 M0QZQ0 153 aa23.03■■□□□ 1.28
HMGB3-205ENST00000455596 ABLIM3O94929 683 aa23.03■■□□□ 1.28
HMGB3-205ENST00000455596 NFICP08651 508 aa23.03■■□□□ 1.28
HMGB3-205ENST00000455596 POU2F2P09086 479 aa23.03■■□□□ 1.28
HMGB3-205ENST00000455596 ELF1P32519 619 aa23.03■■□□□ 1.28
HMGB3-205ENST00000455596 ME1P48163 572 aa23.03■■□□□ 1.28
HMGB3-205ENST00000455596 GUCY2FP51841 1108 aa23.03■■□□□ 1.28
HMGB3-205ENST00000455596 ARPP19P56211 112 aa23.03■■□□□ 1.28
HMGB3-205ENST00000455596 SUGP1Q8IWZ8 645 aaKnown RBP23.03■■□□□ 1.28
HMGB3-205ENST00000455596 MYADMQ96S97 322 aa23.03■■□□□ 1.28
HMGB3-205ENST00000455596 SMOC2Q9H3U7 446 aa23.03■■□□□ 1.28
HMGB3-205ENST00000455596 KCNK12Q9HB15 430 aa23.03■■□□□ 1.28
HMGB3-205ENST00000455596 FAM13BQ9NYF5 915 aa23.03■■□□□ 1.28
HMGB3-205ENST00000455596 IGSF9Q9P2J2 1179 aa23.03■■□□□ 1.28
HMGB3-205ENST00000455596 EPS15L1Q9UBC2 864 aa23.03■■□□□ 1.28
HMGB3-205ENST00000455596 PCDHA7Q9UN72 937 aa23.03■■□□□ 1.28
HMGB3-205ENST00000455596 FSHRP23945 695 aa23.02■■□□□ 1.28
HMGB3-205ENST00000455596 ADSSP30520 456 aa23.02■■□□□ 1.28
HMGB3-205ENST00000455596 AARSP49588 968 aaKnown RBP eCLIP23.02■■□□□ 1.28
HMGB3-205ENST00000455596 DNM1Q05193 864 aaKnown RBP23.02■■□□□ 1.28
HMGB3-205ENST00000455596 TDGQ13569 410 aa23.02■■□□□ 1.28
HMGB3-205ENST00000455596 DSTYKQ6XUX3 929 aa23.02■■□□□ 1.28
HMGB3-205ENST00000455596 STXBP4Q6ZWJ1 553 aa23.02■■□□□ 1.28
HMGB3-205ENST00000455596 FBXL6Q8N531 539 aa23.02■■□□□ 1.28
HMGB3-205ENST00000455596 TRIM9Q9C026 710 aa23.02■■□□□ 1.28
HMGB3-205ENST00000455596 TMEM206Q9H813 350 aa23.02■■□□□ 1.28
HMGB3-205ENST00000455596 C2CD2Q9Y426 696 aa23.02■■□□□ 1.28
HMGB3-205ENST00000455596 ZNF318Q5VUA4 2279 aa23.02■■□□□ 1.28
HMGB3-205ENST00000455596 LDHAP00338 332 aaKnown RBP23.01■■□□□ 1.27
HMGB3-205ENST00000455596 ATF2P15336 505 aa23.01■■□□□ 1.27
HMGB3-205ENST00000455596 PAX3P23760 479 aa23.01■■□□□ 1.27
HMGB3-205ENST00000455596 YWHAHQ04917 246 aaPredicted RBP23.01■■□□□ 1.27
HMGB3-205ENST00000455596 CRELD2Q6UXH1 353 aaPredicted RBP23.01■■□□□ 1.27
HMGB3-205ENST00000455596 FGFBP2Q9BYJ0 223 aa23.01■■□□□ 1.27
HMGB3-205ENST00000455596 MAGEF1Q9HAY2 307 aa23.01■■□□□ 1.27
HMGB3-205ENST00000455596 PRRG1O14668 218 aa23■■□□□ 1.27
HMGB3-205ENST00000455596 POLR2DO15514 142 aaKnown RBP23■■□□□ 1.27
HMGB3-205ENST00000455596 PRPF6O94906 941 aaKnown RBP23■■□□□ 1.27
HMGB3-205ENST00000455596 IL18RAPO95256 599 aa23■■□□□ 1.27
HMGB3-205ENST00000455596 LAMP2P13473 410 aa23■■□□□ 1.27
HMGB3-205ENST00000455596 GARTP22102 1010 aa23■■□□□ 1.27
HMGB3-205ENST00000455596 ASIC1P78348 528 aa23■■□□□ 1.27
HMGB3-205ENST00000455596 NTHL1P78549 312 aa23■■□□□ 1.27
HMGB3-205ENST00000455596 C9orf57Q5W0N0 161 aa23■■□□□ 1.27
HMGB3-205ENST00000455596 TPGS2Q68CL5 300 aa23■■□□□ 1.27
HMGB3-205ENST00000455596 USP37Q86T82 979 aa23■■□□□ 1.27
HMGB3-205ENST00000455596 NXPE3Q969Y0 559 aa23■■□□□ 1.27
HMGB3-205ENST00000455596 FAM213AQ9BRX8 229 aa23■■□□□ 1.27
HMGB3-205ENST00000455596 OXCT2Q9BYC2 517 aaPredicted RBP23■■□□□ 1.27
HMGB3-205ENST00000455596 KCNH6Q9H252 994 aa23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms