RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 KCNE1P15382 129 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 RAB27AP51159 221 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 DEFB103AP81534 67 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 SURF1Q15526 300 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 IQCEQ6IPM2 695 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 RRAGAQ7L523 313 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 APBB1IPQ7Z5R6 666 aaPredicted RBP11.84□□□□□ -0.51
SCN9A-205ENST00000454569 PARP9Q8IXQ6 854 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 TC2NQ8N9U0 490 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 FBXL13Q8NEE6 735 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 BAP1Q92560 729 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 NAA15Q9BXJ9 866 aaKnown RBP11.84□□□□□ -0.51
SCN9A-205ENST00000454569 FTHL17Q9BXU8 183 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 XYLT2Q9H1B5 865 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 RSAD1Q9HA92 442 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 DPP3Q9NY33 737 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 INPP5FQ9Y2H2 1132 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 NUB1Q9Y5A7 615 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 P4HA2O15460 535 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 STX10O60499 249 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 TPM3P06753 285 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 PIK3CAP42336 1068 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 POLR2FP61218 127 aaKnown RBP11.84□□□□□ -0.51
SCN9A-205ENST00000454569 NCOA4Q13772 614 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 CNKSR3Q6P9H4 555 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 ZNF280BQ86YH2 543 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 CD302Q8IX05 232 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 NEK11Q8NG66 645 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 APBB2Q92870 758 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 ANKRD36BP1Q96IX9 119 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 KREMEN1Q96MU8 473 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 ARID3AQ99856 593 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 FAM117AQ9C073 453 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 GPR88Q9GZN0 384 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 POLIQ9UNA4 740 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 AGAP1Q9UPQ3 857 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 GIT1Q9Y2X7 761 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 C2CD2Q9Y426 696 aa11.84□□□□□ -0.51
SCN9A-205ENST00000454569 VWA8A3KMH1 1905 aa11.83□□□□□ -0.52
SCN9A-205ENST00000454569 RANBP2P49792 3224 aaKnown RBP11.83□□□□□ -0.52
SCN9A-205ENST00000454569 F8W810 466 aa11.83□□□□□ -0.52
SCN9A-205ENST00000454569 SPTLC1O15269 473 aa11.83□□□□□ -0.52
SCN9A-205ENST00000454569 N4BP1O75113 896 aaKnown RBP11.83□□□□□ -0.52
SCN9A-205ENST00000454569 PHACTR2O75167 634 aa11.83□□□□□ -0.52
SCN9A-205ENST00000454569 DDHD2O94830 711 aa11.83□□□□□ -0.52
SCN9A-205ENST00000454569 UPP2O95045 317 aa11.83□□□□□ -0.52
SCN9A-205ENST00000454569 PARNO95453 639 aaKnown RBP11.83□□□□□ -0.52
SCN9A-205ENST00000454569 EOMESO95936 686 aa11.83□□□□□ -0.52
SCN9A-205ENST00000454569 CALCAP01258 141 aa11.83□□□□□ -0.52
SCN9A-205ENST00000454569 TNNC2P02585 160 aa11.83□□□□□ -0.52
SCN9A-205ENST00000454569 PTMAP06454 111 aaKnown RBP11.83□□□□□ -0.52
SCN9A-205ENST00000454569 KRT19P08727 400 aa11.83□□□□□ -0.52
SCN9A-205ENST00000454569 UCHL3P15374 230 aa11.83□□□□□ -0.52
SCN9A-205ENST00000454569 POLR2BP30876 1174 aaKnown RBP11.83□□□□□ -0.52
SCN9A-205ENST00000454569 RFC2P35250 354 aa11.83□□□□□ -0.52
SCN9A-205ENST00000454569 ZNF365Q70YC5 407 aa11.83□□□□□ -0.52
SCN9A-205ENST00000454569 OTOP2Q7RTS6 562 aa11.83□□□□□ -0.52
SCN9A-205ENST00000454569 TMEM199Q8N511 208 aa11.83□□□□□ -0.52
SCN9A-205ENST00000454569 CACTINQ8WUQ7 758 aaKnown RBP11.83□□□□□ -0.52
SCN9A-205ENST00000454569 KCNF1Q9H3M0 494 aa11.83□□□□□ -0.52
SCN9A-205ENST00000454569 UBE2TQ9NPD8 197 aaPredicted RBP11.83□□□□□ -0.52
SCN9A-205ENST00000454569 IL23AQ9NPF7 189 aa11.83□□□□□ -0.52
SCN9A-205ENST00000454569 PLCB1Q9NQ66 1216 aa11.83□□□□□ -0.52
SCN9A-205ENST00000454569 C1orf112Q9NSG2 853 aa11.83□□□□□ -0.52
SCN9A-205ENST00000454569 TMEM161AQ9NX61 479 aa11.83□□□□□ -0.52
SCN9A-205ENST00000454569 DNAJC12Q9UKB3 198 aa11.83□□□□□ -0.52
SCN9A-205ENST00000454569 CAPN11Q9UMQ6 739 aa11.83□□□□□ -0.52
SCN9A-205ENST00000454569 ANO9A1A5B4 782 aa11.82□□□□□ -0.52
SCN9A-205ENST00000454569 MFAP3LO75121 409 aa11.82□□□□□ -0.52
SCN9A-205ENST00000454569 ASS1P00966 412 aaKnown RBP11.82□□□□□ -0.52
SCN9A-205ENST00000454569 TRIM21P19474 475 aaKnown RBP11.82□□□□□ -0.52
SCN9A-205ENST00000454569 IKBKEQ14164 716 aa11.82□□□□□ -0.52
SCN9A-205ENST00000454569 ARHGAP44Q17R89 818 aa11.82□□□□□ -0.52
SCN9A-205ENST00000454569 FIGNQ5HY92 759 aa11.82□□□□□ -0.52
SCN9A-205ENST00000454569 C9orf57Q5W0N0 161 aa11.82□□□□□ -0.52
SCN9A-205ENST00000454569 CD300LGQ6UXG3 332 aa11.82□□□□□ -0.52
SCN9A-205ENST00000454569 USP37Q86T82 979 aa11.82□□□□□ -0.52
SCN9A-205ENST00000454569 TNS4Q8IZW8 715 aa11.82□□□□□ -0.52
SCN9A-205ENST00000454569 C3orf58Q8NDZ4 430 aa11.82□□□□□ -0.52
SCN9A-205ENST00000454569 DPF3Q92784 378 aa11.82□□□□□ -0.52
SCN9A-205ENST00000454569 PGBD4Q96DM1 585 aa11.82□□□□□ -0.52
SCN9A-205ENST00000454569 CASD1Q96PB1 797 aa11.82□□□□□ -0.52
SCN9A-205ENST00000454569 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.82□□□□□ -0.526e-9■□□□□ 10.8
SCN9A-205ENST00000454569 SDCBP2Q9H190 292 aa11.82□□□□□ -0.52
SCN9A-205ENST00000454569 CXXC1Q9P0U4 656 aaPredicted RBP11.82□□□□□ -0.52
SCN9A-205ENST00000454569 APEX2Q9UBZ4 518 aa11.82□□□□□ -0.52
SCN9A-205ENST00000454569 UBQLN1Q9UMX0 589 aaKnown RBP11.82□□□□□ -0.52
SCN9A-205ENST00000454569 DERAQ9Y315 318 aa11.82□□□□□ -0.52
SCN9A-205ENST00000454569 TSC2P49815 1807 aa11.81□□□□□ -0.52
SCN9A-205ENST00000454569 CASTOR2A6NHX0 329 aa11.81□□□□□ -0.52
SCN9A-205ENST00000454569 LRRC53A6NM62 1247 aa11.81□□□□□ -0.52
SCN9A-205ENST00000454569 GOLGA6L6A8MZA4 724 aa11.81□□□□□ -0.52
SCN9A-205ENST00000454569 FOXN3O00409 490 aaPredicted RBP11.81□□□□□ -0.52
SCN9A-205ENST00000454569 PIRO00625 290 aa11.81□□□□□ -0.52
SCN9A-205ENST00000454569 INPPL1O15357 1258 aa11.81□□□□□ -0.52
SCN9A-205ENST00000454569 THP07101 528 aa11.81□□□□□ -0.52
SCN9A-205ENST00000454569 SKIP12755 728 aa11.81□□□□□ -0.52
SCN9A-205ENST00000454569 KRT9P35527 623 aa11.81□□□□□ -0.52
SCN9A-205ENST00000454569 CLCNKBP51801 687 aa11.81□□□□□ -0.52
SCN9A-205ENST00000454569 AP3M2P53677 418 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms