RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 TRIP11Q15643 1979 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 MYO9BQ13459 2157 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 LAMA3Q16787 3333 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 SMIM28A0A1B0GU29 152 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 LCHNA4D1U4 455 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 MEIS3P2A8K0S8 358 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 TISP43B9A030 160 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 TMEM189-UBE2V1I3L0A0 370 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 PTGESO14684 152 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 SLC16A3O15427 465 aaKnown RBP9.44□□□□□ -0.9
COL28A1-205ENST00000453441 SIAH2O43255 324 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 POMCP01189 267 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 ALDH2P05091 517 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 CXCL8P10145 99 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 NR2F2P24468 414 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 VARSP26640 1264 aaKnown RBP9.44□□□□□ -0.9
COL28A1-205ENST00000453441 ERCC5P28715 1186 aaPredicted RBP9.44□□□□□ -0.9
COL28A1-205ENST00000453441 CTNNB1P35222 781 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 PSMC2P35998 433 aaKnown RBP9.44□□□□□ -0.9
COL28A1-205ENST00000453441 ACOT2P49753 483 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 GATMP50440 423 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 CYP2J2P51589 502 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 NLRP12P59046 1061 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 PLCB3Q01970 1234 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 KRT17Q04695 432 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 ELAVL2Q12926 359 aaKnown RBP9.44□□□□□ -0.9
COL28A1-205ENST00000453441 BMS1Q14692 1282 aaKnown RBP9.44□□□□□ -0.9
COL28A1-205ENST00000453441 LINC01559Q495D7 138 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 TMEM259Q4ZIN3 620 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 PDE12Q6L8Q7 609 aaKnown RBP9.44□□□□□ -0.9
COL28A1-205ENST00000453441 KCNT2Q6UVM3 1135 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 CRELD2Q6UXH1 353 aaPredicted RBP9.44□□□□□ -0.9
COL28A1-205ENST00000453441 INTS8Q75QN2 995 aaKnown RBP9.44□□□□□ -0.9
COL28A1-205ENST00000453441 COLGALT2Q8IYK4 626 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 COLGALT1Q8NBJ5 622 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 BEST2Q8NFU1 509 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 ERCC4Q92889 916 aaPredicted RBP9.44□□□□□ -0.9
COL28A1-205ENST00000453441 ZFP42Q96MM3 310 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 CEP63Q96MT8 703 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 COLEC11Q9BWP8 271 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 SPG21Q9NZD8 308 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 LMCD1Q9NZU5 365 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 KLK14Q9P0G3 267 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 PUF60Q9UHX1 559 aaKnown RBP9.44□□□□□ -0.9
COL28A1-205ENST00000453441 MAPK8IP1Q9UQF2 711 aa9.44□□□□□ -0.9
COL28A1-205ENST00000453441 ANK1P16157 1881 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 KIAA1671Q9BY89 1806 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 ARHGEF37A1IGU5 675 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 LACTBL1A8MY62 500 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 H3BNC9 293 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 BIN1O00499 593 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 SOX1O00570 391 aaPredicted RBP9.43□□□□□ -0.9
COL28A1-205ENST00000453441 CLIC2O15247 247 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 STX10O60499 249 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 ZC3H11AO75152 810 aaKnown RBP eCLIP9.43□□□□□ -0.9
COL28A1-205ENST00000453441 AP1G2O75843 785 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 GNA14O95837 355 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 AVPP01185 164 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 GALTP07902 379 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 LINC00271P0C7V0 271 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 EPB41P11171 864 aaKnown RBP9.43□□□□□ -0.9
COL28A1-205ENST00000453441 MYOGP15173 224 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 LRPAP1P30533 357 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 TNFSF9P41273 254 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 BCAR1P56945 870 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 ADAM9Q13443 819 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 TMEM132DQ14C87 1099 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 PSMD6Q15008 389 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 ZBTB6Q15916 424 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 STX1AQ16623 288 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 PTPROQ16827 1216 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 EPC2Q52LR7 807 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 DCLRE1AQ6PJP8 1040 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 LRRC55Q6ZSA7 311 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 WDR49Q8IV35 697 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 ZC3H3Q8IXZ2 948 aaKnown RBP9.43□□□□□ -0.9
COL28A1-205ENST00000453441 GPR65Q8IYL9 337 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 SMYD4Q8IYR2 804 aaPredicted RBP9.43□□□□□ -0.9
COL28A1-205ENST00000453441 SLC39A11Q8N1S5 342 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 NOC3LQ8WTT2 800 aaKnown RBP9.43□□□□□ -0.9
COL28A1-205ENST00000453441 NELFBQ8WX92 580 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 SAAL1Q96ER3 474 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 TMEM169Q96HH4 297 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 MFSD14AQ96MC6 490 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 FNBP1Q96RU3 617 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 SEMA6BQ9H3T3 888 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 PCIF1Q9H4Z3 704 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 NRDE2Q9H7Z3 1164 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 METTL14Q9HCE5 456 aaKnown RBP9.43□□□□□ -0.9
COL28A1-205ENST00000453441 ANO10Q9NW15 660 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 RWDD2AQ9UIY3 292 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 SSX2IPQ9Y2D8 614 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 FAN1Q9Y2M0 1017 aa9.43□□□□□ -0.9
COL28A1-205ENST00000453441 FSD2A1L4K1 749 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 LCE2BO14633 110 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 IKBKBO14920 756 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 TRAPPC3O43617 180 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 DDHD2O94830 711 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 CAVIN2O95810 425 aa9.42□□□□□ -0.9
COL28A1-205ENST00000453441 TNNC2P02585 160 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms