RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 FRMD5Q7Z6J6 570 aa14.07□□□□□ -0.16
VPS33A-202ENST00000451053 GDPD5Q8WTR4 605 aa14.07□□□□□ -0.16
VPS33A-202ENST00000451053 DDX27Q96GQ7 796 aaKnown RBP14.07□□□□□ -0.16
VPS33A-202ENST00000451053 CNOT6LQ96LI5 555 aaKnown RBP14.07□□□□□ -0.16
VPS33A-202ENST00000451053 C11orf84Q9BUA3 381 aaPredicted RBP14.07□□□□□ -0.16
VPS33A-202ENST00000451053 COLEC11Q9BWP8 271 aa14.07□□□□□ -0.16
VPS33A-202ENST00000451053 VN1R3Q9BXE9 311 aa14.07□□□□□ -0.16
VPS33A-202ENST00000451053 METTL14Q9HCE5 456 aaKnown RBP14.07□□□□□ -0.16
VPS33A-202ENST00000451053 ALG13Q9NP73 1137 aaKnown RBP14.07□□□□□ -0.16
VPS33A-202ENST00000451053 FANCLQ9NW38 375 aa14.07□□□□□ -0.16
VPS33A-202ENST00000451053 SIX4Q9UIU6 781 aa14.07□□□□□ -0.16
VPS33A-202ENST00000451053 ADAM28Q9UKQ2 775 aa14.07□□□□□ -0.16
VPS33A-202ENST00000451053 ITGA11Q9UKX5 1188 aa14.07□□□□□ -0.16
VPS33A-202ENST00000451053 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.07□□□□□ -0.16
VPS33A-202ENST00000451053 PLXNA4Q9HCM2 1894 aa14.06□□□□□ -0.16
VPS33A-202ENST00000451053 CARNS1A5YM72 827 aa14.06□□□□□ -0.16
VPS33A-202ENST00000451053 H3BNC9 293 aa14.06□□□□□ -0.16
VPS33A-202ENST00000451053 TMEM189-UBE2V1I3L0A0 370 aa14.06□□□□□ -0.16
VPS33A-202ENST00000451053 PIRO00625 290 aa14.06□□□□□ -0.16
VPS33A-202ENST00000451053 GRM6O15303 877 aa14.06□□□□□ -0.16
VPS33A-202ENST00000451053 B3GAT3O94766 335 aa14.06□□□□□ -0.16
VPS33A-202ENST00000451053 GNA14O95837 355 aa14.06□□□□□ -0.16
VPS33A-202ENST00000451053 C4BPAP04003 597 aaKnown RBP14.06□□□□□ -0.16
VPS33A-202ENST00000451053 CDK11BP21127 795 aaKnown RBP14.06□□□□□ -0.16
VPS33A-202ENST00000451053 EEF1GP26641 437 aaKnown RBP14.06□□□□□ -0.16
VPS33A-202ENST00000451053 POLR2BP30876 1174 aaKnown RBP14.06□□□□□ -0.16
VPS33A-202ENST00000451053 BRCC3P46736 316 aa14.06□□□□□ -0.16
VPS33A-202ENST00000451053 GCLMP48507 274 aa14.06□□□□□ -0.16
VPS33A-202ENST00000451053 FXR1P51114 621 aaKnown RBP eCLIP14.06□□□□□ -0.16
VPS33A-202ENST00000451053 PLCB3Q01970 1234 aa14.06□□□□□ -0.16
VPS33A-202ENST00000451053 GPM6BQ13491 265 aa14.06□□□□□ -0.16
VPS33A-202ENST00000451053 GRIN2CQ14957 1233 aa14.06□□□□□ -0.16
VPS33A-202ENST00000451053 CDKAL1Q5VV42 579 aa14.06□□□□□ -0.16
VPS33A-202ENST00000451053 TCERG1LQ5VWI1 586 aa14.06□□□□□ -0.16
VPS33A-202ENST00000451053 DCLRE1AQ6PJP8 1040 aa14.06□□□□□ -0.16
VPS33A-202ENST00000451053 USP37Q86T82 979 aa14.06□□□□□ -0.16
VPS33A-202ENST00000451053 TRIM59Q8IWR1 403 aa14.06□□□□□ -0.16
VPS33A-202ENST00000451053 SPPL3Q8TCT6 385 aa14.06□□□□□ -0.16
VPS33A-202ENST00000451053 SLC35C1Q96A29 364 aa14.06□□□□□ -0.16
VPS33A-202ENST00000451053 TMEM169Q96HH4 297 aa14.06□□□□□ -0.16
VPS33A-202ENST00000451053 FAM161BQ96MY7 647 aa14.06□□□□□ -0.16
VPS33A-202ENST00000451053 MMRN2Q9H8L6 949 aa14.06□□□□□ -0.16
VPS33A-202ENST00000451053 AGAP1Q9UPQ3 857 aa14.06□□□□□ -0.16
VPS33A-202ENST00000451053 I3L4J1 428 aa14.05□□□□□ -0.16
VPS33A-202ENST00000451053 SPTLC1O15269 473 aa14.05□□□□□ -0.16
VPS33A-202ENST00000451053 TADA2AO75478 443 aa14.05□□□□□ -0.16
VPS33A-202ENST00000451053 CSPG5O95196 566 aa14.05□□□□□ -0.16
VPS33A-202ENST00000451053 VNN1O95497 513 aa14.05□□□□□ -0.16
VPS33A-202ENST00000451053 EFEMP2O95967 443 aa14.05□□□□□ -0.16
VPS33A-202ENST00000451053 TPM2P07951 284 aa14.05□□□□□ -0.16
VPS33A-202ENST00000451053 KRT19P08727 400 aa14.05□□□□□ -0.16
VPS33A-202ENST00000451053 DNAJB1P25685 340 aa14.05□□□□□ -0.16
VPS33A-202ENST00000451053 AP3M2P53677 418 aa14.05□□□□□ -0.16
VPS33A-202ENST00000451053 RBP5P82980 135 aa14.05□□□□□ -0.16
VPS33A-202ENST00000451053 BIRC3Q13489 604 aa14.05□□□□□ -0.16
VPS33A-202ENST00000451053 ZACNQ401N2 412 aa14.05□□□□□ -0.16
VPS33A-202ENST00000451053 FUT10Q6P4F1 479 aa14.05□□□□□ -0.16
VPS33A-202ENST00000451053 SARM1Q6SZW1 724 aa14.05□□□□□ -0.16
VPS33A-202ENST00000451053 C15orf39Q6ZRI6 1047 aa14.05□□□□□ -0.16
VPS33A-202ENST00000451053 SV2AQ7L0J3 742 aa14.05□□□□□ -0.16
VPS33A-202ENST00000451053 Q7L0L9 218 aa14.05□□□□□ -0.16
VPS33A-202ENST00000451053 TAS1R1Q7RTX1 841 aa14.05□□□□□ -0.16
VPS33A-202ENST00000451053 DDX53Q86TM3 631 aaKnown RBP14.05□□□□□ -0.16
VPS33A-202ENST00000451053 CREBRFQ8IUR6 639 aa14.05□□□□□ -0.16
VPS33A-202ENST00000451053 GPR62Q9BZJ7 368 aa14.05□□□□□ -0.16
VPS33A-202ENST00000451053 HSD3B7Q9H2F3 369 aa14.05□□□□□ -0.16
VPS33A-202ENST00000451053 PRDM12Q9H4Q4 367 aa14.05□□□□□ -0.16
VPS33A-202ENST00000451053 KCNJ18B7U540 433 aa14.04□□□□□ -0.16
VPS33A-202ENST00000451053 STX10O60499 249 aa14.04□□□□□ -0.16
VPS33A-202ENST00000451053 LPXNO60711 386 aa14.04□□□□□ -0.16
VPS33A-202ENST00000451053 PHACTR2O75167 634 aa14.04□□□□□ -0.16
VPS33A-202ENST00000451053 CST3P01034 146 aaPredicted RBP14.04□□□□□ -0.16
VPS33A-202ENST00000451053 TPM3P06753 285 aa14.04□□□□□ -0.16
VPS33A-202ENST00000451053 ZNF18P17022 549 aa14.04□□□□□ -0.16
VPS33A-202ENST00000451053 PLCB2Q00722 1185 aa14.04□□□□□ -0.16
VPS33A-202ENST00000451053 KRT17Q04695 432 aa14.04□□□□□ -0.16
VPS33A-202ENST00000451053 CAMK1Q14012 370 aa14.04□□□□□ -0.16
VPS33A-202ENST00000451053 KCNJ12Q14500 433 aa14.04□□□□□ -0.16
VPS33A-202ENST00000451053 CBWD6Q4V339 395 aa14.04□□□□□ -0.16
VPS33A-202ENST00000451053 TIGD5Q53EQ6 642 aa14.04□□□□□ -0.16
VPS33A-202ENST00000451053 CBWD3Q5JTY5 395 aa14.04□□□□□ -0.16
VPS33A-202ENST00000451053 CBWD5Q5RIA9 395 aa14.04□□□□□ -0.16
VPS33A-202ENST00000451053 GPR153Q6NV75 609 aa14.04□□□□□ -0.16
VPS33A-202ENST00000451053 RNF168Q8IYW5 571 aaPredicted RBP14.04□□□□□ -0.16
VPS33A-202ENST00000451053 POF1BQ8WVV4 589 aa14.04□□□□□ -0.16
VPS33A-202ENST00000451053 ELMO3Q96BJ8 720 aa14.04□□□□□ -0.16
VPS33A-202ENST00000451053 B3GALT6Q96L58 329 aa14.04□□□□□ -0.16
VPS33A-202ENST00000451053 TMEM8AQ9HCN3 771 aa14.04□□□□□ -0.16
VPS33A-202ENST00000451053 NUB1Q9Y5A7 615 aa14.04□□□□□ -0.16
VPS33A-202ENST00000451053 SF3B1O75533 1304 aaKnown RBP eCLIP14.04□□□□□ -0.16
VPS33A-202ENST00000451053 CBFA2T2O43439 604 aa14.03□□□□□ -0.16
VPS33A-202ENST00000451053 SERPINC1P01008 464 aa14.03□□□□□ -0.16
VPS33A-202ENST00000451053 HLA-DRAP01903 254 aa14.03□□□□□ -0.16
VPS33A-202ENST00000451053 GTF2H1P32780 548 aa14.03□□□□□ -0.16
VPS33A-202ENST00000451053 MTIF2P46199 727 aaKnown RBP14.03□□□□□ -0.16
VPS33A-202ENST00000451053 AARSP49588 968 aaKnown RBP eCLIP14.03□□□□□ -0.16
VPS33A-202ENST00000451053 TAF6P49848 677 aa14.03□□□□□ -0.16
VPS33A-202ENST00000451053 MXI1P50539 228 aa14.03□□□□□ -0.16
VPS33A-202ENST00000451053 LILRA4P59901 499 aa14.03□□□□□ -0.16
VPS33A-202ENST00000451053 MYL6P60660 151 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms