RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 LRRIQ3A6PVS8 624 aaPredicted RBP18.62■□□□□ 0.57
LIME1-202ENST00000444951 PTGESO14684 152 aa18.62■□□□□ 0.57
LIME1-202ENST00000444951 MAPK13O15264 365 aa18.62■□□□□ 0.57
LIME1-202ENST00000444951 PLA2G5P39877 138 aa18.62■□□□□ 0.57
LIME1-202ENST00000444951 RNASELQ05823 741 aaKnown RBP18.62■□□□□ 0.57
LIME1-202ENST00000444951 BFSP1Q12934 665 aa18.62■□□□□ 0.57
LIME1-202ENST00000444951 TMEM132DQ14C87 1099 aa18.62■□□□□ 0.57
LIME1-202ENST00000444951 PUS10Q3MIT2 529 aaKnown RBP18.62■□□□□ 0.57
LIME1-202ENST00000444951 CDKAL1Q5VV42 579 aa18.62■□□□□ 0.57
LIME1-202ENST00000444951 ALKAL1Q6UXT8 129 aa18.62■□□□□ 0.57
LIME1-202ENST00000444951 FRMD5Q7Z6J6 570 aa18.62■□□□□ 0.57
LIME1-202ENST00000444951 C18orf25Q96B23 403 aaPredicted RBP18.62■□□□□ 0.57
LIME1-202ENST00000444951 TMEM117Q9H0C3 514 aa18.62■□□□□ 0.57
LIME1-202ENST00000444951 RBSNQ9H1K0 784 aa18.62■□□□□ 0.57
LIME1-202ENST00000444951 METTL14Q9HCE5 456 aaKnown RBP18.62■□□□□ 0.57
LIME1-202ENST00000444951 CNTN3Q9P232 1028 aa18.62■□□□□ 0.57
LIME1-202ENST00000444951 CITO14578 2027 aa18.61■□□□□ 0.57
LIME1-202ENST00000444951 PTPRJQ12913 1337 aa18.61■□□□□ 0.57
LIME1-202ENST00000444951 PES1O00541 588 aaKnown RBP18.61■□□□□ 0.57
LIME1-202ENST00000444951 THP07101 528 aa18.61■□□□□ 0.57
LIME1-202ENST00000444951 ATP1A3P13637 1013 aa18.61■□□□□ 0.57
LIME1-202ENST00000444951 GUCY2FP51841 1108 aa18.61■□□□□ 0.57
LIME1-202ENST00000444951 SURF1Q15526 300 aa18.61■□□□□ 0.57
LIME1-202ENST00000444951 TCP11X2Q5H9J9 407 aa18.61■□□□□ 0.57
LIME1-202ENST00000444951 CD302Q8IX05 232 aa18.61■□□□□ 0.57
LIME1-202ENST00000444951 EFCAB13Q8IY85 973 aa18.61■□□□□ 0.57
LIME1-202ENST00000444951 GSTCDQ8NEC7 633 aa18.61■□□□□ 0.57
LIME1-202ENST00000444951 TMC2Q8TDI7 906 aa18.61■□□□□ 0.57
LIME1-202ENST00000444951 PARD3BQ8TEW8 1205 aa18.61■□□□□ 0.57
LIME1-202ENST00000444951 POF1BQ8WVV4 589 aa18.61■□□□□ 0.57
LIME1-202ENST00000444951 BORCS6Q96GS4 357 aa18.61■□□□□ 0.57
LIME1-202ENST00000444951 CGRRF1Q99675 332 aa18.61■□□□□ 0.57
LIME1-202ENST00000444951 ASB7Q9H672 318 aa18.61■□□□□ 0.57
LIME1-202ENST00000444951 TBC1D13Q9NVG8 400 aa18.61■□□□□ 0.57
LIME1-202ENST00000444951 TAB2Q9NYJ8 693 aa18.61■□□□□ 0.57
LIME1-202ENST00000444951 C19orf67A6NJJ6 358 aa18.6■□□□□ 0.57
LIME1-202ENST00000444951 MBTPS2O43462 519 aa18.6■□□□□ 0.57
LIME1-202ENST00000444951 TMEM191BP0C7N4 346 aa18.6■□□□□ 0.57
LIME1-202ENST00000444951 PRKCSHP14314 528 aaPredicted RBP18.6■□□□□ 0.57
LIME1-202ENST00000444951 KCNE1P15382 129 aa18.6■□□□□ 0.57
LIME1-202ENST00000444951 GCLMP48507 274 aa18.6■□□□□ 0.57
LIME1-202ENST00000444951 POU5F1Q01860 360 aaKnown RBP18.6■□□□□ 0.57
LIME1-202ENST00000444951 ADAM15Q13444 863 aa18.6■□□□□ 0.57
LIME1-202ENST00000444951 USP37Q86T82 979 aa18.6■□□□□ 0.57
LIME1-202ENST00000444951 OR5B17Q8NGF7 314 aa18.6■□□□□ 0.57
LIME1-202ENST00000444951 RABGGTAQ92696 567 aa18.6■□□□□ 0.57
LIME1-202ENST00000444951 FAM193BQ96PV7 902 aaPredicted RBP18.6■□□□□ 0.57
LIME1-202ENST00000444951 MTMR12Q9C0I1 747 aa18.6■□□□□ 0.57
LIME1-202ENST00000444951 HSD3B7Q9H2F3 369 aa18.6■□□□□ 0.57
LIME1-202ENST00000444951 GOLGA2P5Q9HBQ8 144 aa18.6■□□□□ 0.57
LIME1-202ENST00000444951 CACNG4Q9UBN1 327 aa18.6■□□□□ 0.57
LIME1-202ENST00000444951 TUBGCP4Q9UGJ1 667 aa18.6■□□□□ 0.57
LIME1-202ENST00000444951 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.6■□□□□ 0.57
LIME1-202ENST00000444951 ANK1P16157 1881 aa18.6■□□□□ 0.57
LIME1-202ENST00000444951 NCK2O43639 380 aa18.59■□□□□ 0.57
LIME1-202ENST00000444951 TNNC2P02585 160 aa18.59■□□□□ 0.57
LIME1-202ENST00000444951 GRIK3Q13003 919 aa18.59■□□□□ 0.57
LIME1-202ENST00000444951 BIRC3Q13489 604 aa18.59■□□□□ 0.57
LIME1-202ENST00000444951 XKR4Q5GH76 650 aa18.59■□□□□ 0.57
LIME1-202ENST00000444951 C1orf220Q5T0J3 134 aa18.59■□□□□ 0.57
LIME1-202ENST00000444951 SPOUT1Q5T280 376 aaKnown RBP18.59■□□□□ 0.57
LIME1-202ENST00000444951 ZNF280BQ86YH2 543 aa18.59■□□□□ 0.57
LIME1-202ENST00000444951 WDR49Q8IV35 697 aa18.59■□□□□ 0.57
LIME1-202ENST00000444951 TRIM59Q8IWR1 403 aa18.59■□□□□ 0.57
LIME1-202ENST00000444951 ADHFE1Q8IWW8 467 aa18.59■□□□□ 0.57
LIME1-202ENST00000444951 ANKRD20A12PQ8NF67 263 aa18.59■□□□□ 0.57
LIME1-202ENST00000444951 BEST2Q8NFU1 509 aa18.59■□□□□ 0.57
LIME1-202ENST00000444951 CACTINQ8WUQ7 758 aaKnown RBP18.59■□□□□ 0.57
LIME1-202ENST00000444951 ZNF516Q92618 1163 aa18.59■□□□□ 0.57
LIME1-202ENST00000444951 ANKRD36BP1Q96IX9 119 aa18.59■□□□□ 0.57
LIME1-202ENST00000444951 PPP1R10Q96QC0 940 aaKnown RBP18.59■□□□□ 0.57
LIME1-202ENST00000444951 TUBGCP2Q9BSJ2 902 aa18.59■□□□□ 0.57
LIME1-202ENST00000444951 VPS16Q9H269 839 aa18.59■□□□□ 0.57
LIME1-202ENST00000444951 INTS13Q9NVM9 706 aa18.59■□□□□ 0.57
LIME1-202ENST00000444951 KANSL3Q9P2N6 904 aa18.59■□□□□ 0.57
LIME1-202ENST00000444951 TRIP11Q15643 1979 aa18.59■□□□□ 0.57
LIME1-202ENST00000444951 CASTOR2A6NHX0 329 aa18.58■□□□□ 0.56
LIME1-202ENST00000444951 PHACTR2O75167 634 aa18.58■□□□□ 0.56
LIME1-202ENST00000444951 DDHD2O94830 711 aa18.58■□□□□ 0.56
LIME1-202ENST00000444951 CLSTN1O94985 981 aa18.58■□□□□ 0.56
LIME1-202ENST00000444951 GLP2RO95838 553 aa18.58■□□□□ 0.56
LIME1-202ENST00000444951 ZNF18P17022 549 aa18.58■□□□□ 0.56
LIME1-202ENST00000444951 EEF1GP26641 437 aaKnown RBP18.58■□□□□ 0.56
LIME1-202ENST00000444951 MARSP56192 900 aaKnown RBP18.58■□□□□ 0.56
LIME1-202ENST00000444951 SOX4Q06945 474 aaPredicted RBP18.58■□□□□ 0.56
LIME1-202ENST00000444951 PPP3CAQ08209 521 aa18.58■□□□□ 0.56
LIME1-202ENST00000444951 KRT31Q15323 416 aa18.58■□□□□ 0.56
LIME1-202ENST00000444951 SMAD2Q15796 467 aaKnown RBP18.58■□□□□ 0.56
LIME1-202ENST00000444951 DUOXA2Q1HG44 320 aa18.58■□□□□ 0.56
LIME1-202ENST00000444951 RBM23Q86U06 439 aaKnown RBP18.58■□□□□ 0.56
LIME1-202ENST00000444951 LRRC43Q8N309 656 aa18.58■□□□□ 0.56
LIME1-202ENST00000444951 SLC35C1Q96A29 364 aa18.58■□□□□ 0.56
LIME1-202ENST00000444951 FAM122AQ96E09 287 aa18.58■□□□□ 0.56
LIME1-202ENST00000444951 MSLNLQ96KJ4 702 aa18.58■□□□□ 0.56
LIME1-202ENST00000444951 MRPL9Q9BYD2 267 aaKnown RBP18.58■□□□□ 0.56
LIME1-202ENST00000444951 SLC38A7Q9NVC3 462 aa18.58■□□□□ 0.56
LIME1-202ENST00000444951 DPP3Q9NY33 737 aa18.58■□□□□ 0.56
LIME1-202ENST00000444951 CLEC1BQ9P126 229 aa18.58■□□□□ 0.56
LIME1-202ENST00000444951 UBQLN1Q9UMX0 589 aaKnown RBP18.58■□□□□ 0.56
LIME1-202ENST00000444951 DERAQ9Y315 318 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms