RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 ZNF233A6NK53 670 aa12.41□□□□□ -0.42
COL28A1-203ENST00000435823 MBTPS2O43462 519 aa12.41□□□□□ -0.42
COL28A1-203ENST00000435823 RHOBTB3O94955 611 aa12.41□□□□□ -0.42
COL28A1-203ENST00000435823 GLUD1P00367 558 aa12.41□□□□□ -0.42
COL28A1-203ENST00000435823 FGFR3P22607 806 aa12.41□□□□□ -0.42
COL28A1-203ENST00000435823 HOXD13P35453 343 aa12.41□□□□□ -0.42
COL28A1-203ENST00000435823 BRCC3P46736 316 aa12.41□□□□□ -0.42
COL28A1-203ENST00000435823 RBM10P98175 930 aaKnown RBP12.41□□□□□ -0.42
COL28A1-203ENST00000435823 STK4Q13043 487 aa12.41□□□□□ -0.42
COL28A1-203ENST00000435823 KCNB1Q14721 858 aa12.41□□□□□ -0.42
COL28A1-203ENST00000435823 SURF1Q15526 300 aa12.41□□□□□ -0.42
COL28A1-203ENST00000435823 RTP2Q5QGT7 225 aa12.41□□□□□ -0.42
COL28A1-203ENST00000435823 CD300LGQ6UXG3 332 aa12.41□□□□□ -0.42
COL28A1-203ENST00000435823 NT5DC4Q86YG4 428 aa12.41□□□□□ -0.42
COL28A1-203ENST00000435823 KIAA0895Q8NCT3 520 aa12.41□□□□□ -0.42
COL28A1-203ENST00000435823 ENGASEQ8NFI3 743 aa12.41□□□□□ -0.42
COL28A1-203ENST00000435823 LNX1Q8TBB1 728 aaPredicted RBP12.41□□□□□ -0.42
COL28A1-203ENST00000435823 SLC22A17Q8WUG5 538 aa12.41□□□□□ -0.42
COL28A1-203ENST00000435823 FBXL18Q96ME1 805 aa12.41□□□□□ -0.42
COL28A1-203ENST00000435823 TIGD1Q96MW7 591 aa12.41□□□□□ -0.42
COL28A1-203ENST00000435823 RMND1Q9NWS8 449 aa12.41□□□□□ -0.42
COL28A1-203ENST00000435823 HSPBP1Q9NZL4 362 aa12.41□□□□□ -0.42
COL28A1-203ENST00000435823 ANK1P16157 1881 aa12.4□□□□□ -0.42
COL28A1-203ENST00000435823 I3L4J1 428 aa12.4□□□□□ -0.42
COL28A1-203ENST00000435823 SYN3O14994 580 aa12.4□□□□□ -0.42
COL28A1-203ENST00000435823 TGFB1I1O43294 461 aa12.4□□□□□ -0.42
COL28A1-203ENST00000435823 KINO60870 393 aaKnown RBP12.4□□□□□ -0.42
COL28A1-203ENST00000435823 SMC2O95347 1197 aa12.4□□□□□ -0.42
COL28A1-203ENST00000435823 IL9P15248 144 aa12.4□□□□□ -0.42
COL28A1-203ENST00000435823 EPCAMP16422 314 aa12.4□□□□□ -0.42
COL28A1-203ENST00000435823 PAX3P23760 479 aa12.4□□□□□ -0.42
COL28A1-203ENST00000435823 TKTP29401 623 aaKnown RBP12.4□□□□□ -0.42
COL28A1-203ENST00000435823 CLCN4P51793 760 aa12.4□□□□□ -0.42
COL28A1-203ENST00000435823 GUCY2FP51841 1108 aa12.4□□□□□ -0.42
COL28A1-203ENST00000435823 SNW1Q13573 536 aaKnown RBP12.4□□□□□ -0.42
COL28A1-203ENST00000435823 CES5AQ6NT32 575 aa12.4□□□□□ -0.42
COL28A1-203ENST00000435823 PRSS55Q6UWB4 352 aaPredicted RBP12.4□□□□□ -0.42
COL28A1-203ENST00000435823 ANKS3Q6ZW76 656 aa12.4□□□□□ -0.42
COL28A1-203ENST00000435823 C12orf56Q8IXR9 622 aa12.4□□□□□ -0.42
COL28A1-203ENST00000435823 XXYLT1Q8NBI6 393 aa12.4□□□□□ -0.42
COL28A1-203ENST00000435823 SMRP1Q8NCR6 262 aa12.4□□□□□ -0.42
COL28A1-203ENST00000435823 APPL2Q8NEU8 664 aa12.4□□□□□ -0.42
COL28A1-203ENST00000435823 CACTINQ8WUQ7 758 aaKnown RBP12.4□□□□□ -0.42
COL28A1-203ENST00000435823 SUSD3Q96L08 255 aa12.4□□□□□ -0.42
COL28A1-203ENST00000435823 UHRF1Q96T88 793 aaPredicted RBP12.4□□□□□ -0.42
COL28A1-203ENST00000435823 DPP3Q9NY33 737 aa12.4□□□□□ -0.42
COL28A1-203ENST00000435823 ARHGEF37A1IGU5 675 aa12.39□□□□□ -0.43
COL28A1-203ENST00000435823 H7C4K7 107 aa12.39□□□□□ -0.43
COL28A1-203ENST00000435823 CLIC2O15247 247 aa12.39□□□□□ -0.43
COL28A1-203ENST00000435823 CALUO43852 315 aaPredicted RBP12.39□□□□□ -0.43
COL28A1-203ENST00000435823 EXOC3O60645 756 aa12.39□□□□□ -0.43
COL28A1-203ENST00000435823 C1RP00736 705 aa12.39□□□□□ -0.43
COL28A1-203ENST00000435823 RPL17P18621 184 aaKnown RBP12.39□□□□□ -0.43
COL28A1-203ENST00000435823 IGFBP6P24592 240 aaPredicted RBP12.39□□□□□ -0.43
COL28A1-203ENST00000435823 CYP2J2P51589 502 aa12.39□□□□□ -0.43
COL28A1-203ENST00000435823 TFAMQ00059 246 aaKnown RBP12.39□□□□□ -0.43
COL28A1-203ENST00000435823 ITIH3Q06033 890 aa12.39□□□□□ -0.43
COL28A1-203ENST00000435823 PNOCQ13519 176 aa12.39□□□□□ -0.43
COL28A1-203ENST00000435823 C9orf57Q5W0N0 161 aa12.39□□□□□ -0.43
COL28A1-203ENST00000435823 SYCE2Q6PIF2 218 aa12.39□□□□□ -0.43
COL28A1-203ENST00000435823 DSTYKQ6XUX3 929 aa12.39□□□□□ -0.43
COL28A1-203ENST00000435823 PALB2Q86YC2 1186 aa12.39□□□□□ -0.43
COL28A1-203ENST00000435823 CBWD2Q8IUF1 395 aa12.39□□□□□ -0.43
COL28A1-203ENST00000435823 GLYCTKQ8IVS8 523 aa12.39□□□□□ -0.43
COL28A1-203ENST00000435823 EFCAB13Q8IY85 973 aa12.39□□□□□ -0.43
COL28A1-203ENST00000435823 ZSWIM2Q8NEG5 633 aa12.39□□□□□ -0.43
COL28A1-203ENST00000435823 APOL5Q9BWW9 433 aa12.39□□□□□ -0.43
COL28A1-203ENST00000435823 COL25A1Q9BXS0 654 aaPredicted RBP12.39□□□□□ -0.43
COL28A1-203ENST00000435823 SFXN1Q9H9B4 322 aa12.39□□□□□ -0.43
COL28A1-203ENST00000435823 MTRRQ9UBK8 725 aa12.39□□□□□ -0.43
COL28A1-203ENST00000435823 PCDHB8Q9UN66 801 aa12.39□□□□□ -0.43
COL28A1-203ENST00000435823 R3HCC1Q9Y3T6 440 aaKnown RBP12.39□□□□□ -0.43
COL28A1-203ENST00000435823 BACE2Q9Y5Z0 518 aa12.39□□□□□ -0.43
COL28A1-203ENST00000435823 TCF20Q9UGU0 1960 aaKnown RBP12.39□□□□□ -0.43
COL28A1-203ENST00000435823 VWA8A3KMH1 1905 aa12.39□□□□□ -0.43
COL28A1-203ENST00000435823 DLL1O00548 723 aa12.38□□□□□ -0.43
COL28A1-203ENST00000435823 PIRO00625 290 aa12.38□□□□□ -0.43
COL28A1-203ENST00000435823 PDXKO00764 312 aa12.38□□□□□ -0.43
COL28A1-203ENST00000435823 MAP3K13O43283 966 aa12.38□□□□□ -0.43
COL28A1-203ENST00000435823 GADD45BO75293 160 aaPredicted RBP12.38□□□□□ -0.43
COL28A1-203ENST00000435823 TMEM191BP0C7N4 346 aa12.38□□□□□ -0.43
COL28A1-203ENST00000435823 UBE2HP62256 183 aa12.38□□□□□ -0.43
COL28A1-203ENST00000435823 SMAD2Q15796 467 aaKnown RBP12.38□□□□□ -0.43
COL28A1-203ENST00000435823 SNRNP35Q16560 246 aaKnown RBP12.38□□□□□ -0.43
COL28A1-203ENST00000435823 VARS2Q5ST30 1063 aaKnown RBP12.38□□□□□ -0.43
COL28A1-203ENST00000435823 RARS2Q5T160 578 aaKnown RBP12.38□□□□□ -0.43
COL28A1-203ENST00000435823 IER5LQ5T953 404 aa12.38□□□□□ -0.43
COL28A1-203ENST00000435823 ELOA2Q8IYF1 753 aaPredicted RBP12.38□□□□□ -0.43
COL28A1-203ENST00000435823 RDH13Q8NBN7 331 aa12.38□□□□□ -0.43
COL28A1-203ENST00000435823 HDAC7Q8WUI4 952 aa12.38□□□□□ -0.43
COL28A1-203ENST00000435823 SMARCE1Q969G3 411 aa12.38□□□□□ -0.43
COL28A1-203ENST00000435823 ANKRD36BP1Q96IX9 119 aa12.38□□□□□ -0.43
COL28A1-203ENST00000435823 ZNF560Q96MR9 790 aa12.38□□□□□ -0.43
COL28A1-203ENST00000435823 GSDMAQ96QA5 445 aa12.38□□□□□ -0.43
COL28A1-203ENST00000435823 FNBP1Q96RU3 617 aa12.38□□□□□ -0.43
COL28A1-203ENST00000435823 POP1Q99575 1024 aaKnown RBP12.38□□□□□ -0.43
COL28A1-203ENST00000435823 CLSTN3Q9BQT9 956 aa12.38□□□□□ -0.43
COL28A1-203ENST00000435823 GTPBP4Q9BZE4 634 aaKnown RBP12.38□□□□□ -0.43
COL28A1-203ENST00000435823 ADAM7Q9H2U9 754 aa12.38□□□□□ -0.43
COL28A1-203ENST00000435823 PLEKHA4Q9H4M7 779 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms