RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 ANKS1BQ7Z6G8 1248 aa12.56□□□□□ -0.4
CD44-209ENST00000433892 ANKRD42Q8N9B4 389 aa12.56□□□□□ -0.4
CD44-209ENST00000433892 NSUN6Q8TEA1 469 aaKnown RBP12.56□□□□□ -0.4
CD44-209ENST00000433892 KCNK9Q9NPC2 374 aa12.56□□□□□ -0.4
CD44-209ENST00000433892 PCDHB4Q9Y5E5 795 aa12.56□□□□□ -0.4
CD44-209ENST00000433892 TCP11X1B4DZS4 312 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 DKC1O60832 514 aaKnown RBP eCLIP12.55□□□□□ -0.4
CD44-209ENST00000433892 GNA15P30679 374 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 POLGP54098 1239 aaPredicted RBP12.55□□□□□ -0.4
CD44-209ENST00000433892 STRN3Q13033 797 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 MAMLD1Q13495 774 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 CUL2Q13617 745 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 CIAPIN1Q6FI81 312 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 VSTM1Q6UX27 236 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 CRELD2Q6UXH1 353 aaPredicted RBP12.55□□□□□ -0.4
CD44-209ENST00000433892 ABHD15Q6UXT9 468 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 RHOT1Q8IXI2 618 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 PARP9Q8IXQ6 854 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 KLHL11Q9NVR0 708 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 STK32BQ9NY57 414 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 NINJ2Q9NZG7 142 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 ANKFY1Q9P2R3 1169 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 TBK1Q9UHD2 729 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 DOCK5Q9H7D0 1870 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 WDR81Q562E7 1941 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 ZNF541Q9H0D2 1346 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 GH1P01241 217 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 FDX1P10109 184 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 NOMO3P69849 1222 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 EN1Q05925 392 aaPredicted RBP12.55□□□□□ -0.4
CD44-209ENST00000433892 ENPEPQ07075 957 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 XRCC4Q13426 336 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 TNFAIP1Q13829 316 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 EMC2Q15006 297 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 FAM133BQ5BKY9 247 aaKnown RBP12.55□□□□□ -0.4
CD44-209ENST00000433892 NBPF12Q5TAG4 269 aaPredicted RBP12.55□□□□□ -0.4
CD44-209ENST00000433892 LIN9Q5TKA1 542 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 SCARA3Q6AZY7 606 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 ZNF365Q70YC5 407 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 ABRAQ8N0Z2 381 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 CYP4X1Q8N118 509 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.55□□□□□ -0.4
CD44-209ENST00000433892 ZKSCAN4Q969J2 545 aaPredicted RBP12.55□□□□□ -0.4
CD44-209ENST00000433892 SGSM3Q96HU1 749 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 OSBPL8Q9BZF1 889 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 NSRP1Q9H0G5 558 aaKnown RBP12.55□□□□□ -0.4
CD44-209ENST00000433892 KIAA1586Q9HCI6 787 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 FGFR1OP2Q9NVK5 253 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 RBAKQ9NYW8 714 aaPredicted RBP12.55□□□□□ -0.4
CD44-209ENST00000433892 GGT7Q9UJ14 662 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 FZD1Q9UP38 647 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 NEU2Q9Y3R4 380 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 KIAA1217Q5T5P2 1943 aa12.55□□□□□ -0.4
CD44-209ENST00000433892 LRRIQ4A6NIV6 560 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 TLR3O15455 904 aaKnown RBP12.54□□□□□ -0.4
CD44-209ENST00000433892 PSTPIP1O43586 416 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 SNX3O60493 162 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 CETPP11597 493 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 NF2P35240 595 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 BACE1P56817 501 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 SP2Q02086 613 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 CAV1Q03135 178 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 ADCY1Q08828 1119 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 PTP4A2Q12974 167 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 MPP2Q14168 576 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 CCNG2Q16589 344 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 SEZ6Q53EL9 994 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 SEPT14Q6ZU15 432 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.54□□□□□ -0.4
CD44-209ENST00000433892 GSTA5Q7RTV2 222 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 TRPM8Q7Z2W7 1104 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 GDAP1Q8TB36 358 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 ASAP3Q8TDY4 903 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 ZNF526Q8TF50 670 aaPredicted RBP12.54□□□□□ -0.4
CD44-209ENST00000433892 C9orf72Q96LT7 481 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 ABCF3Q9NUQ8 709 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.54□□□□□ -0.4
CD44-209ENST00000433892 PI4K2BG5E9Z4 385 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 H0YCG3 227 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 CHUKO15111 745 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 DNAJC8O75937 253 aaPredicted RBP12.54□□□□□ -0.4
CD44-209ENST00000433892 BRAFP15056 766 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 ATP5DP30049 168 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 HMGCS2P54868 508 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 PDE4CQ08493 712 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 ATP13A4Q4VNC1 1196 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 XKR3Q5GH77 459 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 IZUMO3Q5VZ72 239 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 KAZNQ674X7 775 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 MIS18BP1Q6P0N0 1132 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 KATNAL2Q8IYT4 538 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 CCDC89Q8N998 374 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 RBBP8NLQ8NC74 664 aaPredicted RBP12.54□□□□□ -0.4
CD44-209ENST00000433892 REPS2Q8NFH8 660 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 OR5B17Q8NGF7 314 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 TARS2Q9BW92 718 aaKnown RBP12.54□□□□□ -0.4
CD44-209ENST00000433892 MRPL47Q9HD33 250 aaKnown RBP12.54□□□□□ -0.4
CD44-209ENST00000433892 ZNF214Q9UL59 606 aaPredicted RBP12.54□□□□□ -0.4
CD44-209ENST00000433892 SLC12A4Q9UP95 1085 aa12.54□□□□□ -0.4
CD44-209ENST00000433892 NUB1Q9Y5A7 615 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms