RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 EIF3BP55884 814 aaKnown RBP9.17□□□□□ -0.94
USP40-203ENST00000427112 WDR4P57081 412 aaKnown RBP9.17□□□□□ -0.94
USP40-203ENST00000427112 DHX34Q14147 1143 aaKnown RBP9.17□□□□□ -0.94
USP40-203ENST00000427112 SLC1A5Q15758 541 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 TKFCQ3LXA3 575 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 PREPLQ4J6C6 727 aaPredicted RBP9.17□□□□□ -0.94
USP40-203ENST00000427112 KRT39Q6A163 491 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 HACE1Q8IYU2 909 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 OR5B17Q8NGF7 314 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 AGR3Q8TD06 166 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 MASTLQ96GX5 879 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 RSRC1Q96IZ7 334 aaKnown RBP9.17□□□□□ -0.94
USP40-203ENST00000427112 GJD4Q96KN9 370 aaPredicted RBP9.17□□□□□ -0.94
USP40-203ENST00000427112 PPP1R36Q96LQ0 422 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 DDX50Q9BQ39 737 aaKnown RBP9.17□□□□□ -0.94
USP40-203ENST00000427112 OSBPL8Q9BZF1 889 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 SLC13A1Q9BZW2 595 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 QTRT2Q9H974 415 aaKnown RBP9.17□□□□□ -0.94
USP40-203ENST00000427112 CNOT10Q9H9A5 744 aaKnown RBP9.17□□□□□ -0.94
USP40-203ENST00000427112 FAM187AA6NFU0 413 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 H0YIN7 160 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 AGTP01019 485 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 RARGP13631 454 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 ADRA1DP25100 572 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 MAGEA4P43358 317 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 ATXN3P54252 364 aaPredicted RBP9.17□□□□□ -0.94
USP40-203ENST00000427112 CDH8P55286 799 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 TFAMQ00059 246 aaKnown RBP9.17□□□□□ -0.94
USP40-203ENST00000427112 RFWD3Q6PCD5 774 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 SPNS2Q8IVW8 549 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 SCYL3Q8IZE3 742 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 PARD3BQ8TEW8 1205 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 ZNF516Q92618 1163 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 ZDHHC15Q96MV8 337 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 KIAA1683Q9H0B3 1180 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 TRABDQ9H4I3 376 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 SYNCQ9H7C4 482 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 CHMP2BQ9UQN3 213 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 MRPL11Q9Y3B7 192 aaKnown RBP9.17□□□□□ -0.94
USP40-203ENST00000427112 AHDC1Q5TGY3 1603 aaPredicted RBP9.17□□□□□ -0.94
USP40-203ENST00000427112 MYO18AQ92614 2054 aaKnown RBP9.17□□□□□ -0.94
USP40-203ENST00000427112 SYNJ2BP-COX16A0A087WUM0 186 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 CCDC78A2IDD5 438 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 HLA-DRAP01903 254 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 P4HBP07237 508 aaKnown RBP9.17□□□□□ -0.94
USP40-203ENST00000427112 KRT4P19013 534 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 TNFSF9P41273 254 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 COPS2P61201 443 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 IGBP1P78318 339 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 TFDP1Q14186 410 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 KIF22Q14807 665 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 CGB2Q6NT52 195 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 C11orf63Q6NUN7 778 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 SCYL2Q6P3W7 929 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 HHIPL2Q6UWX4 724 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 ANO5Q75V66 913 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 MTDHQ86UE4 582 aaKnown RBP9.17□□□□□ -0.94
USP40-203ENST00000427112 CRYGNQ8WXF5 182 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 ATG4CQ96DT6 458 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 SNF8Q96H20 258 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 GPATCH2LQ9NWQ4 482 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 COX16Q9P0S2 106 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 GRID1Q9ULK0 1009 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 TBX20Q9UMR3 447 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 NEU2Q9Y3R4 380 aa9.17□□□□□ -0.94
USP40-203ENST00000427112 FRMPD4Q14CM0 1322 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 MROH7Q68CQ1 1323 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.16□□□□□ -0.94
USP40-203ENST00000427112 TTC4O95801 387 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 CD48P09326 243 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 GNA15P30679 374 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 ORC2Q13416 577 aaPredicted RBP9.16□□□□□ -0.94
USP40-203ENST00000427112 PPP2R5DQ14738 602 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 SIX1Q15475 284 aaPredicted RBP9.16□□□□□ -0.94
USP40-203ENST00000427112 CCDC6Q16204 474 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 WDR44Q5JSH3 913 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 LVRNQ6Q4G3 990 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 NPNTQ6UXI9 565 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 SAMD7Q7Z3H4 446 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 TTC7BQ86TV6 843 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 LRRC6Q86X45 466 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 TRIM50Q86XT4 487 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 RHPN2Q8IUC4 686 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 LRRC71Q8N4P6 559 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 SEC14L1Q92503 715 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 CFAP36Q96G28 342 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 ZNF570Q96NI8 536 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 NAP1L4Q99733 375 aaKnown RBP9.16□□□□□ -0.94
USP40-203ENST00000427112 GEMIN8Q9NWZ8 242 aaKnown RBP9.16□□□□□ -0.94
USP40-203ENST00000427112 NCANO14594 1321 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 PODXLO00592 558 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 FGFR1P11362 822 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 LACTBP83111 547 aaPredicted RBP9.16□□□□□ -0.94
USP40-203ENST00000427112 CDR2Q01850 454 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 VPS72Q15906 364 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 SWT1Q5T5J6 900 aaKnown RBP9.16□□□□□ -0.94
USP40-203ENST00000427112 ANKRD22Q5VYY1 191 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 IL31Q6EBC2 164 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 SLC39A4Q6P5W5 647 aa9.16□□□□□ -0.94
USP40-203ENST00000427112 PPP1R21Q6ZMI0 780 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms