RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 NBPF7P0C2Y1 421 aaPredicted RBP3.05□□□□□ -1.92
VPS13A-208ENST00000423463 LSP1P33241 339 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 IGHMBP2P38935 993 aaKnown RBP3.05□□□□□ -1.92
VPS13A-208ENST00000423463 IARSP41252 1262 aaKnown RBP3.05□□□□□ -1.92
VPS13A-208ENST00000423463 MANFP55145 182 aaKnown RBP3.05□□□□□ -1.92
VPS13A-208ENST00000423463 ANAPC15P60006 121 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 ATP2C1P98194 919 aaPredicted RBP3.05□□□□□ -1.92
VPS13A-208ENST00000423463 IFIT5Q13325 482 aaKnown RBP3.05□□□□□ -1.92
VPS13A-208ENST00000423463 TRIM25Q14258 630 aaKnown RBP3.05□□□□□ -1.92
VPS13A-208ENST00000423463 CCDC57Q2TAC2 916 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 CT83Q5H943 113 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 SLFN13Q68D06 897 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 IQSEC1Q6DN90 963 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 TCTN3Q6NUS6 607 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 ZNF585AQ6P3V2 769 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 LMBR1LQ6UX01 489 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 OLFM4Q6UX06 510 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 ESPNLQ6ZVH7 1005 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 ANKRD53Q8N9V6 530 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 GIMAP8Q8ND71 665 aaPredicted RBP3.05□□□□□ -1.92
VPS13A-208ENST00000423463 JDP2Q8WYK2 163 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 FRAT1Q92837 279 aaPredicted RBP3.05□□□□□ -1.92
VPS13A-208ENST00000423463 TMEM176AQ96HP8 235 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 WDR92Q96MX6 357 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 EYA3Q99504 573 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 SOX7Q9BT81 388 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 ANKRD2Q9GZV1 360 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 GREM2Q9H772 168 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 SAE1Q9UBE0 346 aaPredicted RBP3.05□□□□□ -1.92
VPS13A-208ENST00000423463 APOBEC2Q9Y235 224 aaKnown RBP3.05□□□□□ -1.92
VPS13A-208ENST00000423463 NOC2LQ9Y3T9 749 aaKnown RBP3.05□□□□□ -1.92
VPS13A-208ENST00000423463 GLTPD2A6NH11 291 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 ITGB3P05106 788 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 UBTFL1P0CB47 393 aaPredicted RBP3.05□□□□□ -1.92
VPS13A-208ENST00000423463 TRIM27P14373 513 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 CR2P20023 1033 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 PRELPP51888 382 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 SCAND1P57086 179 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 GPSM2P81274 684 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 ADCY1Q08828 1119 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 RABL6Q3YEC7 729 aaPredicted RBP3.05□□□□□ -1.92
VPS13A-208ENST00000423463 PITRM1Q5JRX3 1037 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 EPHA10Q5JZY3 1008 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 CIR1Q86X95 450 aaPredicted RBP3.05□□□□□ -1.92
VPS13A-208ENST00000423463 PALM2Q8IXS6 379 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 RPUSD2Q8IZ73 545 aaKnown RBP3.05□□□□□ -1.92
VPS13A-208ENST00000423463 ATL2Q8NHH9 583 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 WDR66Q8TBY9 1149 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 NKD2Q969F2 451 aaPredicted RBP3.05□□□□□ -1.92
VPS13A-208ENST00000423463 KAZALD1Q96I82 304 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 SUCLG2Q96I99 432 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 RPL10LQ96L21 214 aaKnown RBP3.05□□□□□ -1.92
VPS13A-208ENST00000423463 MPHOSPH8Q99549 860 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 FDXACB1Q9BRP7 624 aaPredicted RBP3.05□□□□□ -1.92
VPS13A-208ENST00000423463 PITHD1Q9GZP4 211 aaPredicted RBP3.05□□□□□ -1.92
VPS13A-208ENST00000423463 ZNF277Q9NRM2 450 aaPredicted RBP3.05□□□□□ -1.92
VPS13A-208ENST00000423463 SMPD4Q9NXE4 827 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 USP36Q9P275 1121 aaKnown RBP3.05□□□□□ -1.92
VPS13A-208ENST00000423463 PUF60Q9UHX1 559 aaKnown RBP3.05□□□□□ -1.92
VPS13A-208ENST00000423463 EVLQ9UI08 416 aaPredicted RBP3.05□□□□□ -1.92
VPS13A-208ENST00000423463 RCAN3Q9UKA8 241 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 PCDHB6Q9Y5E3 794 aa3.05□□□□□ -1.92
VPS13A-208ENST00000423463 MYPNQ86TC9 1320 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 SLX4Q8IY92 1834 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 ANKRD36CQ5JPF3 1778 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 ARFGEF2Q9Y6D5 1785 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 C2orf78A6NCI8 922 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 FZD9O00144 591 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 PPIP5K2O43314 1243 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 TOX4O94842 621 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 PFKMP08237 780 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 BCAR1P56945 870 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 CCT2P78371 535 aaKnown RBP3.04□□□□□ -1.92
VPS13A-208ENST00000423463 HGFACQ04756 655 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 PPARAQ07869 468 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 SURF1Q15526 300 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 KLHDC10Q6PID8 442 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 BMP8AQ7Z5Y6 402 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 LYSMD2Q8IV50 215 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 ANKRD44Q8N8A2 993 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.04□□□□□ -1.92
VPS13A-208ENST00000423463 TBC1D16Q8TBP0 767 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 GAB3Q8WWW8 586 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 GCDHQ92947 438 aaPredicted RBP3.04□□□□□ -1.92
VPS13A-208ENST00000423463 SCYL1Q96KG9 808 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 WWC2-AS2Q96NR7 200 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 HAPLN2Q9GZV7 340 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 C14orf119Q9NWQ9 140 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 POLLQ9UGP5 575 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 CTDP1Q9Y5B0 961 aaPredicted RBP3.04□□□□□ -1.92
VPS13A-208ENST00000423463 ARFGEF1Q9Y6D6 1849 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 SNED1Q8TER0 1413 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 NCANO14594 1321 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 XDHP47989 1333 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 BRCA1P38398 1863 aaKnown RBP3.04□□□□□ -1.92
VPS13A-208ENST00000423463 DLEC1Q9Y238 1755 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP3.04□□□□□ -1.92
VPS13A-208ENST00000423463 ZEB2O60315 1214 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 PRKD3O94806 890 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 VEGFAP15692 232 aaPredicted RBP3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms