RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 C3orf58Q8NDZ4 430 aa18.35■□□□□ 0.53
COL7A1-202ENST00000422991 FAM200AQ8TCP9 573 aa18.35■□□□□ 0.53
COL7A1-202ENST00000422991 PLVAPQ9BX97 442 aa18.35■□□□□ 0.53
COL7A1-202ENST00000422991 ZNF576Q9H609 170 aa18.35■□□□□ 0.53
COL7A1-202ENST00000422991 MAGEC2Q9UBF1 373 aaPredicted RBP18.35■□□□□ 0.53
COL7A1-202ENST00000422991 MTUS1Q9ULD2 1270 aa18.35■□□□□ 0.53
COL7A1-202ENST00000422991 FAN1Q9Y2M0 1017 aa18.35■□□□□ 0.53
COL7A1-202ENST00000422991 SMTNL1A8MU46 457 aa18.34■□□□□ 0.53
COL7A1-202ENST00000422991 KCNJ18B7U540 433 aa18.34■□□□□ 0.53
COL7A1-202ENST00000422991 NT5C1B-RDH14C9J2C7 533 aa18.34■□□□□ 0.53
COL7A1-202ENST00000422991 PIRO00625 290 aa18.34■□□□□ 0.53
COL7A1-202ENST00000422991 C4BPAP04003 597 aaKnown RBP18.34■□□□□ 0.53
COL7A1-202ENST00000422991 ITGB3P05106 788 aa18.34■□□□□ 0.53
COL7A1-202ENST00000422991 EEF1GP26641 437 aaKnown RBP18.34■□□□□ 0.53
COL7A1-202ENST00000422991 POLR2BP30876 1174 aaKnown RBP18.34■□□□□ 0.53
COL7A1-202ENST00000422991 GCLMP48507 274 aa18.34■□□□□ 0.53
COL7A1-202ENST00000422991 KCNJ12Q14500 433 aa18.34■□□□□ 0.53
COL7A1-202ENST00000422991 ZACNQ401N2 412 aa18.34■□□□□ 0.53
COL7A1-202ENST00000422991 TCP11X2Q5H9J9 407 aa18.34■□□□□ 0.53
COL7A1-202ENST00000422991 DCLRE1AQ6PJP8 1040 aa18.34■□□□□ 0.53
COL7A1-202ENST00000422991 SV2AQ7L0J3 742 aa18.34■□□□□ 0.53
COL7A1-202ENST00000422991 IGSF21Q96ID5 467 aa18.34■□□□□ 0.53
COL7A1-202ENST00000422991 CDX2Q99626 313 aaPredicted RBP18.34■□□□□ 0.53
COL7A1-202ENST00000422991 COLEC11Q9BWP8 271 aa18.34■□□□□ 0.53
COL7A1-202ENST00000422991 TMEM8AQ9HCN3 771 aa18.34■□□□□ 0.53
COL7A1-202ENST00000422991 SPG21Q9NZD8 308 aa18.34■□□□□ 0.53
COL7A1-202ENST00000422991 TSC2P49815 1807 aa18.34■□□□□ 0.53
COL7A1-202ENST00000422991 BECN2A8MW95 431 aa18.33■□□□□ 0.52
COL7A1-202ENST00000422991 ITGB1P05556 798 aa18.33■□□□□ 0.52
COL7A1-202ENST00000422991 RB1P06400 928 aa18.33■□□□□ 0.52
COL7A1-202ENST00000422991 IGFBP6P24592 240 aaPredicted RBP18.33■□□□□ 0.52
COL7A1-202ENST00000422991 MTIF2P46199 727 aaKnown RBP18.33■□□□□ 0.52
COL7A1-202ENST00000422991 MXI1P50539 228 aa18.33■□□□□ 0.52
COL7A1-202ENST00000422991 BIRC3Q13489 604 aa18.33■□□□□ 0.52
COL7A1-202ENST00000422991 SCARA3Q6AZY7 606 aa18.33■□□□□ 0.52
COL7A1-202ENST00000422991 CD300LGQ6UXG3 332 aa18.33■□□□□ 0.52
COL7A1-202ENST00000422991 LUZP1Q86V48 1076 aa18.33■□□□□ 0.52
COL7A1-202ENST00000422991 KLHL23Q8NBE8 558 aa18.33■□□□□ 0.52
COL7A1-202ENST00000422991 FBXO22Q8NEZ5 403 aa18.33■□□□□ 0.52
COL7A1-202ENST00000422991 MMRN2Q9H8L6 949 aa18.33■□□□□ 0.52
COL7A1-202ENST00000422991 ADAM28Q9UKQ2 775 aa18.33■□□□□ 0.52
COL7A1-202ENST00000422991 AGAP1Q9UPQ3 857 aa18.33■□□□□ 0.52
COL7A1-202ENST00000422991 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.33■□□□□ 0.52
COL7A1-202ENST00000422991 ATG2AQ2TAZ0 1938 aa18.32■□□□□ 0.52
COL7A1-202ENST00000422991 FGF18O76093 207 aa18.32■□□□□ 0.52
COL7A1-202ENST00000422991 B3GAT3O94766 335 aa18.32■□□□□ 0.52
COL7A1-202ENST00000422991 VNN1O95497 513 aa18.32■□□□□ 0.52
COL7A1-202ENST00000422991 EFEMP2O95967 443 aa18.32■□□□□ 0.52
COL7A1-202ENST00000422991 RBP5P82980 135 aa18.32■□□□□ 0.52
COL7A1-202ENST00000422991 CBWD6Q4V339 395 aa18.32■□□□□ 0.52
COL7A1-202ENST00000422991 CBWD3Q5JTY5 395 aa18.32■□□□□ 0.52
COL7A1-202ENST00000422991 CBWD5Q5RIA9 395 aa18.32■□□□□ 0.52
COL7A1-202ENST00000422991 CREBRFQ8IUR6 639 aa18.32■□□□□ 0.52
COL7A1-202ENST00000422991 LRRC52Q8N7C0 313 aa18.32■□□□□ 0.52
COL7A1-202ENST00000422991 HASPINQ8TF76 798 aa18.32■□□□□ 0.52
COL7A1-202ENST00000422991 TMEM169Q96HH4 297 aa18.32■□□□□ 0.52
COL7A1-202ENST00000422991 ZNF560Q96MR9 790 aa18.32■□□□□ 0.52
COL7A1-202ENST00000422991 C11orf84Q9BUA3 381 aaPredicted RBP18.32■□□□□ 0.52
COL7A1-202ENST00000422991 CERS4Q9HA82 394 aa18.32■□□□□ 0.52
COL7A1-202ENST00000422991 VWA8A3KMH1 1905 aa18.31■□□□□ 0.52
COL7A1-202ENST00000422991 PHACTR2O75167 634 aa18.31■□□□□ 0.52
COL7A1-202ENST00000422991 AFPP02771 609 aaKnown RBP18.31■□□□□ 0.52
COL7A1-202ENST00000422991 KRT19P08727 400 aa18.31■□□□□ 0.52
COL7A1-202ENST00000422991 PNPLA4P41247 253 aa18.31■□□□□ 0.52
COL7A1-202ENST00000422991 FMO5P49326 533 aa18.31■□□□□ 0.52
COL7A1-202ENST00000422991 AARSP49588 968 aaKnown RBP eCLIP18.31■□□□□ 0.52
COL7A1-202ENST00000422991 MYL7Q01449 175 aa18.31■□□□□ 0.52
COL7A1-202ENST00000422991 PLCB3Q01970 1234 aa18.31■□□□□ 0.52
COL7A1-202ENST00000422991 KCNH2Q12809 1159 aa18.31■□□□□ 0.52
COL7A1-202ENST00000422991 KRT31Q15323 416 aa18.31■□□□□ 0.52
COL7A1-202ENST00000422991 MAN2A1Q16706 1144 aa18.31■□□□□ 0.52
COL7A1-202ENST00000422991 KRT39Q6A163 491 aa18.31■□□□□ 0.52
COL7A1-202ENST00000422991 ARNTL2Q8WYA1 636 aa18.31■□□□□ 0.52
COL7A1-202ENST00000422991 TUBGCP2Q9BSJ2 902 aa18.31■□□□□ 0.52
COL7A1-202ENST00000422991 ANP32EQ9BTT0 268 aa18.31■□□□□ 0.52
COL7A1-202ENST00000422991 VN1R3Q9BXE9 311 aa18.31■□□□□ 0.52
COL7A1-202ENST00000422991 SF3B1O75533 1304 aaKnown RBP eCLIP18.3■□□□□ 0.52
COL7A1-202ENST00000422991 EPOPA6NHQ4 379 aa18.3■□□□□ 0.52
COL7A1-202ENST00000422991 H3BNC9 293 aa18.3■□□□□ 0.52
COL7A1-202ENST00000422991 SPTLC1O15269 473 aa18.3■□□□□ 0.52
COL7A1-202ENST00000422991 PMM2O15305 246 aa18.3■□□□□ 0.52
COL7A1-202ENST00000422991 N4BP1O75113 896 aaKnown RBP18.3■□□□□ 0.52
COL7A1-202ENST00000422991 TADA2AO75478 443 aa18.3■□□□□ 0.52
COL7A1-202ENST00000422991 HLA-DRAP01903 254 aa18.3■□□□□ 0.52
COL7A1-202ENST00000422991 ATP1A3P13637 1013 aa18.3■□□□□ 0.52
COL7A1-202ENST00000422991 PIK3CAP42336 1068 aa18.3■□□□□ 0.52
COL7A1-202ENST00000422991 TAF6P49848 677 aa18.3■□□□□ 0.52
COL7A1-202ENST00000422991 LILRA4P59901 499 aa18.3■□□□□ 0.52
COL7A1-202ENST00000422991 TRPC3Q13507 836 aa18.3■□□□□ 0.52
COL7A1-202ENST00000422991 NCOA4Q13772 614 aa18.3■□□□□ 0.52
COL7A1-202ENST00000422991 GRIN2CQ14957 1233 aa18.3■□□□□ 0.52
COL7A1-202ENST00000422991 MIIPQ5JXC2 388 aa18.3■□□□□ 0.52
COL7A1-202ENST00000422991 FUT10Q6P4F1 479 aa18.3■□□□□ 0.52
COL7A1-202ENST00000422991 DDX53Q86TM3 631 aaKnown RBP18.3■□□□□ 0.52
COL7A1-202ENST00000422991 RNF168Q8IYW5 571 aaPredicted RBP18.3■□□□□ 0.52
COL7A1-202ENST00000422991 TAS1R2Q8TE23 839 aa18.3■□□□□ 0.52
COL7A1-202ENST00000422991 MYLIPQ8WY64 445 aa18.3■□□□□ 0.52
COL7A1-202ENST00000422991 XYLT2Q9H1B5 865 aa18.3■□□□□ 0.52
COL7A1-202ENST00000422991 TAB2Q9NYJ8 693 aa18.3■□□□□ 0.52
COL7A1-202ENST00000422991 LIMA1Q9UHB6 759 aaKnown RBP18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms