RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 SPOPLQ6IQ16 392 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 ALKAL1Q6UXT8 129 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 VPS36Q86VN1 386 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 GPIHBP1Q8IV16 184 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 TMEM139Q8IV31 216 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 DBF4BQ8NFT6 615 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 HELQQ8TDG4 1101 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 TATDN2Q93075 761 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 CCDC42Q96M95 316 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 GAD1Q99259 594 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 TSPYL2Q9H2G4 693 aaPredicted RBP18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 AIPL1Q9NZN9 384 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 TUBGCP4Q9UGJ1 667 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 LRFN2Q9ULH4 789 aa18.4■□□□□ 0.54
CCDC28B-202ENST00000421922 TDRD15B5MCY1 1934 aaKnown RBP18.39■□□□□ 0.54
CCDC28B-202ENST00000421922 SOWAHDA6NJG2 315 aa18.39■□□□□ 0.53
CCDC28B-202ENST00000421922 CCP110O43303 1012 aa18.39■□□□□ 0.53
CCDC28B-202ENST00000421922 EOMESO95936 686 aa18.39■□□□□ 0.53
CCDC28B-202ENST00000421922 CST3P01034 146 aaPredicted RBP18.39■□□□□ 0.53
CCDC28B-202ENST00000421922 THP07101 528 aa18.39■□□□□ 0.53
CCDC28B-202ENST00000421922 KRT5P13647 590 aa18.39■□□□□ 0.53
CCDC28B-202ENST00000421922 CYP3A5P20815 502 aa18.39■□□□□ 0.53
CCDC28B-202ENST00000421922 GUCY2FP51841 1108 aa18.39■□□□□ 0.53
CCDC28B-202ENST00000421922 TNNC1P63316 161 aa18.39■□□□□ 0.53
CCDC28B-202ENST00000421922 CDK17Q00537 523 aa18.39■□□□□ 0.53
CCDC28B-202ENST00000421922 XKR4Q5GH76 650 aa18.39■□□□□ 0.53
CCDC28B-202ENST00000421922 AGMOQ6ZNB7 445 aa18.39■□□□□ 0.53
CCDC28B-202ENST00000421922 DEFB128Q7Z7B8 93 aa18.39■□□□□ 0.53
CCDC28B-202ENST00000421922 C18orf25Q96B23 403 aaPredicted RBP18.39■□□□□ 0.53
CCDC28B-202ENST00000421922 HPDLQ96IR7 371 aa18.39■□□□□ 0.53
CCDC28B-202ENST00000421922 ZMAT2Q96NC0 199 aaKnown RBP18.39■□□□□ 0.53
CCDC28B-202ENST00000421922 WNT8AQ9H1J5 351 aa18.39■□□□□ 0.53
CCDC28B-202ENST00000421922 NXF1Q9UBU9 619 aaKnown RBP18.39■□□□□ 0.53
CCDC28B-202ENST00000421922 PRKAG2Q9UGJ0 569 aa18.39■□□□□ 0.53
CCDC28B-202ENST00000421922 SIX4Q9UIU6 781 aa18.39■□□□□ 0.53
CCDC28B-202ENST00000421922 PYCARDQ9ULZ3 195 aa18.39■□□□□ 0.53
CCDC28B-202ENST00000421922 INPP5FQ9Y2H2 1132 aa18.39■□□□□ 0.53
CCDC28B-202ENST00000421922 DNAH12Q6ZR08 3092 aa18.38■□□□□ 0.53
CCDC28B-202ENST00000421922 ARL5CA6NH57 179 aa18.38■□□□□ 0.53
CCDC28B-202ENST00000421922 AKR1B10O60218 316 aa18.38■□□□□ 0.53
CCDC28B-202ENST00000421922 RAG1P15918 1043 aa18.38■□□□□ 0.53
CCDC28B-202ENST00000421922 EN2P19622 333 aaPredicted RBP18.38■□□□□ 0.53
CCDC28B-202ENST00000421922 WDR59Q6PJI9 974 aa18.38■□□□□ 0.53
CCDC28B-202ENST00000421922 GLB1LQ6UWU2 654 aa18.38■□□□□ 0.53
CCDC28B-202ENST00000421922 SCARA5Q6ZMJ2 495 aa18.38■□□□□ 0.53
CCDC28B-202ENST00000421922 CCDC170Q8IYT3 715 aa18.38■□□□□ 0.53
CCDC28B-202ENST00000421922 URGCPQ8TCY9 931 aa18.38■□□□□ 0.53
CCDC28B-202ENST00000421922 KAT5Q92993 513 aa18.38■□□□□ 0.53
CCDC28B-202ENST00000421922 JAKMIP2Q96AA8 810 aa18.38■□□□□ 0.53
CCDC28B-202ENST00000421922 ELMO3Q96BJ8 720 aa18.38■□□□□ 0.53
CCDC28B-202ENST00000421922 ZFP42Q96MM3 310 aa18.38■□□□□ 0.53
CCDC28B-202ENST00000421922 KREMEN1Q96MU8 473 aa18.38■□□□□ 0.53
CCDC28B-202ENST00000421922 NHEJ1Q9H9Q4 299 aaPredicted RBP18.38■□□□□ 0.53
CCDC28B-202ENST00000421922 APOBEC3GQ9HC16 384 aaKnown RBP18.38■□□□□ 0.53
CCDC28B-202ENST00000421922 NUB1Q9Y5A7 615 aa18.38■□□□□ 0.53
CCDC28B-202ENST00000421922 C9IYK1 514 aa18.37■□□□□ 0.53
CCDC28B-202ENST00000421922 EVI5O60447 810 aa18.37■□□□□ 0.53
CCDC28B-202ENST00000421922 CXCL10P02778 98 aa18.37■□□□□ 0.53
CCDC28B-202ENST00000421922 PNPLA4P41247 253 aa18.37■□□□□ 0.53
CCDC28B-202ENST00000421922 KCNJ6P48051 423 aa18.37■□□□□ 0.53
CCDC28B-202ENST00000421922 SCNN1GP51170 649 aa18.37■□□□□ 0.53
CCDC28B-202ENST00000421922 WDR72Q3MJ13 1102 aa18.37■□□□□ 0.53
CCDC28B-202ENST00000421922 ABI1Q8IZP0 508 aa18.37■□□□□ 0.53
CCDC28B-202ENST00000421922 LRRC52Q8N7C0 313 aa18.37■□□□□ 0.53
CCDC28B-202ENST00000421922 SHC3Q92529 594 aa18.37■□□□□ 0.53
CCDC28B-202ENST00000421922 CHP1Q99653 195 aa18.37■□□□□ 0.53
CCDC28B-202ENST00000421922 PCDHB7Q9Y5E2 793 aa18.37■□□□□ 0.53
CCDC28B-202ENST00000421922 PCDHB4Q9Y5E5 795 aa18.37■□□□□ 0.53
CCDC28B-202ENST00000421922 SSU72P8A0A1W2PR75 194 aa18.36■□□□□ 0.53
CCDC28B-202ENST00000421922 MEIS3P2A8K0S8 358 aa18.36■□□□□ 0.53
CCDC28B-202ENST00000421922 ESPNB1AK53 854 aa18.36■□□□□ 0.53
CCDC28B-202ENST00000421922 FOXN3O00409 490 aaPredicted RBP18.36■□□□□ 0.53
CCDC28B-202ENST00000421922 ZSCAN12O43309 604 aa18.36■□□□□ 0.53
CCDC28B-202ENST00000421922 TIMP1P01033 207 aa18.36■□□□□ 0.53
CCDC28B-202ENST00000421922 PNMA6AP0CW24 399 aaPredicted RBP18.36■□□□□ 0.53
CCDC28B-202ENST00000421922 EIF4A3P38919 411 aaKnown RBP18.36■□□□□ 0.53
CCDC28B-202ENST00000421922 PDE6CP51160 858 aa18.36■□□□□ 0.53
CCDC28B-202ENST00000421922 GRIK3Q13003 919 aa18.36■□□□□ 0.53
CCDC28B-202ENST00000421922 SPA17Q15506 151 aa18.36■□□□□ 0.53
CCDC28B-202ENST00000421922 ZBTB6Q15916 424 aa18.36■□□□□ 0.53
CCDC28B-202ENST00000421922 E4F1Q66K89 784 aaPredicted RBP18.36■□□□□ 0.53
CCDC28B-202ENST00000421922 CNKSR3Q6P9H4 555 aa18.36■□□□□ 0.53
CCDC28B-202ENST00000421922 TMEM199Q8N511 208 aa18.36■□□□□ 0.53
CCDC28B-202ENST00000421922 LINC01599Q8WXQ3 324 aa18.36■□□□□ 0.53
CCDC28B-202ENST00000421922 FAXDC2Q96IV6 333 aa18.36■□□□□ 0.53
CCDC28B-202ENST00000421922 PPP1R10Q96QC0 940 aaKnown RBP18.36■□□□□ 0.53
CCDC28B-202ENST00000421922 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.36■□□□□ 0.53
CCDC28B-202ENST00000421922 XYLT2Q9H1B5 865 aa18.36■□□□□ 0.53
CCDC28B-202ENST00000421922 CXCL16Q9H2A7 254 aa18.36■□□□□ 0.53
CCDC28B-202ENST00000421922 LUC7LQ9NQ29 371 aaKnown RBP18.36■□□□□ 0.53
CCDC28B-202ENST00000421922 RNF19AQ9NV58 838 aa18.36■□□□□ 0.53
CCDC28B-202ENST00000421922 TMEM161AQ9NX61 479 aa18.36■□□□□ 0.53
CCDC28B-202ENST00000421922 MICAL3Q7RTP6 2002 aa18.35■□□□□ 0.53
CCDC28B-202ENST00000421922 PTGESO14684 152 aa18.35■□□□□ 0.53
CCDC28B-202ENST00000421922 HOXA2O43364 376 aa18.35■□□□□ 0.53
CCDC28B-202ENST00000421922 STAU1O95793 577 aaKnown RBP18.35■□□□□ 0.53
CCDC28B-202ENST00000421922 PRKCIP41743 596 aa18.35■□□□□ 0.53
CCDC28B-202ENST00000421922 BPIFB4P59827 614 aa18.35■□□□□ 0.53
CCDC28B-202ENST00000421922 SV2CQ496J9 727 aa18.35■□□□□ 0.53
CCDC28B-202ENST00000421922 C9orf57Q5W0N0 161 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms