RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 KRT39Q6A163 491 aa15.88■□□□□ 0.13
USP4-203ENST00000415188 ARHGEF19Q8IW93 802 aa15.88■□□□□ 0.13
USP4-203ENST00000415188 FAM71AQ8IYT1 594 aa15.88■□□□□ 0.13
USP4-203ENST00000415188 MAFAQ8NHW3 353 aaPredicted RBP15.88■□□□□ 0.13
USP4-203ENST00000415188 KAT2BQ92831 832 aa15.88■□□□□ 0.13
USP4-203ENST00000415188 LRRC45Q96CN5 670 aa15.88■□□□□ 0.13
USP4-203ENST00000415188 MFSD14AQ96MC6 490 aa15.88■□□□□ 0.13
USP4-203ENST00000415188 TMEM117Q9H0C3 514 aa15.88■□□□□ 0.13
USP4-203ENST00000415188 NFU1Q9UMS0 254 aa15.88■□□□□ 0.13
USP4-203ENST00000415188 UNC80Q8N2C7 3258 aa15.88■□□□□ 0.13
USP4-203ENST00000415188 GOLGA6L10A0A0M3HER8 536 aa15.87■□□□□ 0.13
USP4-203ENST00000415188 DDX3YO15523 660 aaKnown RBP15.87■□□□□ 0.13
USP4-203ENST00000415188 ZC3H11AO75152 810 aaKnown RBP eCLIP15.87■□□□□ 0.13
USP4-203ENST00000415188 ADRB2P07550 413 aa15.87■□□□□ 0.13
USP4-203ENST00000415188 FOSL2P15408 326 aa15.87■□□□□ 0.13
USP4-203ENST00000415188 HNRNPH2P55795 449 aaKnown RBP15.87■□□□□ 0.13
USP4-203ENST00000415188 GPC5P78333 572 aa15.87■□□□□ 0.13
USP4-203ENST00000415188 SNRNP35Q16560 246 aaKnown RBP15.87■□□□□ 0.13
USP4-203ENST00000415188 GNPTABQ3T906 1256 aa15.87■□□□□ 0.13
USP4-203ENST00000415188 LRIG3Q6UXM1 1119 aa15.87■□□□□ 0.13
USP4-203ENST00000415188 ANO5Q75V66 913 aa15.87■□□□□ 0.13
USP4-203ENST00000415188 ENOSF1Q7L5Y1 443 aa15.87■□□□□ 0.13
USP4-203ENST00000415188 KLHL7Q8IXQ5 586 aa15.87■□□□□ 0.13
USP4-203ENST00000415188 IQCKQ8N0W5 287 aa15.87■□□□□ 0.13
USP4-203ENST00000415188 TSEN2Q8NCE0 465 aaKnown RBP15.87■□□□□ 0.13
USP4-203ENST00000415188 IFT81Q8WYA0 676 aa15.87■□□□□ 0.13
USP4-203ENST00000415188 SEC14L1Q92503 715 aa15.87■□□□□ 0.13
USP4-203ENST00000415188 SHC3Q92529 594 aa15.87■□□□□ 0.13
USP4-203ENST00000415188 RPS6KC1Q96S38 1066 aa15.87■□□□□ 0.13
USP4-203ENST00000415188 ZNF576Q9H609 170 aa15.87■□□□□ 0.13
USP4-203ENST00000415188 KIAA1586Q9HCI6 787 aa15.87■□□□□ 0.13
USP4-203ENST00000415188 IGSF9BQ9UPX0 1349 aa15.87■□□□□ 0.13
USP4-203ENST00000415188 MYH9P35579 1960 aaKnown RBP15.86■□□□□ 0.13
USP4-203ENST00000415188 SIP14410 1827 aa15.86■□□□□ 0.13
USP4-203ENST00000415188 DENND3A2RUS2 1198 aa15.86■□□□□ 0.13
USP4-203ENST00000415188 CCDC169A6NNP5 214 aa15.86■□□□□ 0.13
USP4-203ENST00000415188 TULP1O00294 542 aaPredicted RBP15.86■□□□□ 0.13
USP4-203ENST00000415188 SART1O43290 800 aaKnown RBP15.86■□□□□ 0.13
USP4-203ENST00000415188 LRRN2O75325 713 aa15.86■□□□□ 0.13
USP4-203ENST00000415188 STBD1O95210 358 aa15.86■□□□□ 0.13
USP4-203ENST00000415188 GGPS1O95749 300 aa15.86■□□□□ 0.13
USP4-203ENST00000415188 MTMR3Q13615 1198 aa15.86■□□□□ 0.13
USP4-203ENST00000415188 PLA2G4FQ68DD2 849 aa15.86■□□□□ 0.13
USP4-203ENST00000415188 DEFB128Q7Z7B8 93 aa15.86■□□□□ 0.13
USP4-203ENST00000415188 RPUSD2Q8IZ73 545 aaKnown RBP15.86■□□□□ 0.13
USP4-203ENST00000415188 UBL4BQ8N7F7 174 aa15.86■□□□□ 0.13
USP4-203ENST00000415188 PLEKHO2Q8TD55 490 aa15.86■□□□□ 0.13
USP4-203ENST00000415188 PARD3BQ8TEW8 1205 aa15.86■□□□□ 0.13
USP4-203ENST00000415188 CEP170P1Q96L14 293 aa15.86■□□□□ 0.13
USP4-203ENST00000415188 IFT74Q96LB3 600 aa15.86■□□□□ 0.13
USP4-203ENST00000415188 NT5C1BQ96P26 610 aa15.86■□□□□ 0.13
USP4-203ENST00000415188 THAP2Q9H0W7 228 aa15.86■□□□□ 0.13
USP4-203ENST00000415188 ATP6V0A4Q9HBG4 840 aa15.86■□□□□ 0.13
USP4-203ENST00000415188 JPH1Q9HDC5 661 aaPredicted RBP15.86■□□□□ 0.13
USP4-203ENST00000415188 GPRC5CQ9NQ84 441 aa15.86■□□□□ 0.13
USP4-203ENST00000415188 FAM114A2Q9NRY5 505 aa15.86■□□□□ 0.13
USP4-203ENST00000415188 SEPT11Q9NVA2 429 aaKnown RBP15.86■□□□□ 0.13
USP4-203ENST00000415188 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.86■□□□□ 0.134e-6■■■■□ 20.5
USP4-203ENST00000415188 GABBR1Q9UBS5 961 aa15.86■□□□□ 0.13
USP4-203ENST00000415188 TISP43B9A030 160 aa15.85■□□□□ 0.13
USP4-203ENST00000415188 ZNF286BP0CG31 522 aa15.85■□□□□ 0.13
USP4-203ENST00000415188 ABCB4P21439 1286 aa15.85■□□□□ 0.13
USP4-203ENST00000415188 MRPS25P82663 173 aaKnown RBP15.85■□□□□ 0.13
USP4-203ENST00000415188 SKOR1P84550 965 aa15.85■□□□□ 0.13
USP4-203ENST00000415188 PTPN11Q06124 597 aaPredicted RBP15.85■□□□□ 0.13
USP4-203ENST00000415188 CYP24A1Q07973 514 aa15.85■□□□□ 0.13
USP4-203ENST00000415188 DGKDQ16760 1214 aa15.85■□□□□ 0.13
USP4-203ENST00000415188 GDF6Q6KF10 455 aaPredicted RBP15.85■□□□□ 0.13
USP4-203ENST00000415188 MIS18BP1Q6P0N0 1132 aa15.85■□□□□ 0.13
USP4-203ENST00000415188 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.85■□□□□ 0.13
USP4-203ENST00000415188 ARHGEF26Q96DR7 871 aa15.85■□□□□ 0.13
USP4-203ENST00000415188 ZIM3Q96PE6 472 aa15.85■□□□□ 0.13
USP4-203ENST00000415188 MTIF3Q9H2K0 278 aaKnown RBP15.85■□□□□ 0.13
USP4-203ENST00000415188 GOLPH3Q9H4A6 298 aa15.85■□□□□ 0.13
USP4-203ENST00000415188 OSGEPQ9NPF4 335 aa15.85■□□□□ 0.13
USP4-203ENST00000415188 SLC9A2Q9UBY0 812 aa15.85■□□□□ 0.13
USP4-203ENST00000415188 NOCTQ9UK39 431 aaKnown RBP15.85■□□□□ 0.13
USP4-203ENST00000415188 NOD1Q9Y239 953 aa15.85■□□□□ 0.13
USP4-203ENST00000415188 YBX2Q9Y2T7 364 aaKnown RBP15.85■□□□□ 0.13
USP4-203ENST00000415188 FAM187AA6NFU0 413 aa15.84■□□□□ 0.13
USP4-203ENST00000415188 ZBBXA8MT70 800 aa15.84■□□□□ 0.13
USP4-203ENST00000415188 SPATA31C2B4DYI2 1134 aa15.84■□□□□ 0.13
USP4-203ENST00000415188 ANKRD63C9JTQ0 380 aa15.84■□□□□ 0.13
USP4-203ENST00000415188 FTLP02792 175 aaPredicted RBP15.84■□□□□ 0.13
USP4-203ENST00000415188 ADSSP30520 456 aa15.84■□□□□ 0.13
USP4-203ENST00000415188 ICAM3P32942 547 aa15.84■□□□□ 0.13
USP4-203ENST00000415188 RABGGTBP53611 331 aa15.84■□□□□ 0.13
USP4-203ENST00000415188 RNASE9P60153 205 aaKnown RBP15.84■□□□□ 0.13
USP4-203ENST00000415188 SP2Q02086 613 aa15.84■□□□□ 0.13
USP4-203ENST00000415188 LAMC2Q13753 1193 aa15.84■□□□□ 0.13
USP4-203ENST00000415188 PTGISQ16647 500 aa15.84■□□□□ 0.13
USP4-203ENST00000415188 SPDYCQ5MJ68 293 aa15.84■□□□□ 0.13
USP4-203ENST00000415188 CBWD2Q8IUF1 395 aa15.84■□□□□ 0.13
USP4-203ENST00000415188 DHX37Q8IY37 1157 aaKnown RBP15.84■□□□□ 0.13
USP4-203ENST00000415188 EFCAB13Q8IY85 973 aa15.84■□□□□ 0.13
USP4-203ENST00000415188 GPD1LQ8N335 351 aa15.84■□□□□ 0.13
USP4-203ENST00000415188 FBXL13Q8NEE6 735 aa15.84■□□□□ 0.13
USP4-203ENST00000415188 PPTC7Q8NI37 304 aa15.84■□□□□ 0.13
USP4-203ENST00000415188 EPS8L1Q8TE68 723 aa15.84■□□□□ 0.13
USP4-203ENST00000415188 SLC20A1Q8WUM9 679 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms