RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 HVCN1Q96D96 273 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 ZSCAN31Q96LW9 406 aaPredicted RBP2.95□□□□□ -1.94
MCF2-204ENST00000414978 UHRF1Q96T88 793 aaPredicted RBP2.95□□□□□ -1.94
MCF2-204ENST00000414978 P2RX7Q99572 595 aaKnown RBP2.95□□□□□ -1.94
MCF2-204ENST00000414978 PIM2Q9P1W9 311 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 POGKQ9P215 609 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 CDC42EP3Q9UKI2 254 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 CRYL1Q9Y2S2 319 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 TMEM98Q9Y2Y6 226 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP2.95□□□□□ -1.94
MCF2-204ENST00000414978 A0A1W2PPC1 479 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 APOL1O14791 398 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 ADCY6O43306 1168 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 PARP1P09874 1014 aaKnown RBP2.94□□□□□ -1.94
MCF2-204ENST00000414978 TSHRP16473 764 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 NAT1P18440 290 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 RXRAP19793 462 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 KRT20P35900 424 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 CACNB3P54284 484 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 MANFP55145 182 aaKnown RBP2.94□□□□□ -1.94
MCF2-204ENST00000414978 KRT76Q01546 638 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 NRG1Q02297 640 aaPredicted RBP2.94□□□□□ -1.94
MCF2-204ENST00000414978 TAF11Q15544 211 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 MEA1Q16626 185 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 TMEM132EQ6IEE7 984 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 TATDN1Q6P1N9 297 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 FBXO38Q6PIJ6 1188 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 RRAGAQ7L523 313 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 TMC6Q7Z403 805 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 LYSMD2Q8IV50 215 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 ARRDC4Q8NCT1 418 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 RAPGEF4Q8WZA2 1011 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 CENPIQ92674 756 aaPredicted RBP2.94□□□□□ -1.94
MCF2-204ENST00000414978 RRP36Q96EU6 259 aaKnown RBP2.94□□□□□ -1.94
MCF2-204ENST00000414978 FAM193BQ96PV7 902 aaPredicted RBP2.94□□□□□ -1.94
MCF2-204ENST00000414978 ZCCHC17Q9NP64 241 aaKnown RBP2.94□□□□□ -1.94
MCF2-204ENST00000414978 PNPLA8Q9NP80 782 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 TMEM160Q9NX00 188 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 RNF181Q9P0P0 153 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 STK26Q9P289 416 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 ARHGAP28Q9P2N2 729 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 IMPACTQ9P2X3 320 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 DBR1Q9UK59 544 aaKnown RBP2.94□□□□□ -1.94
MCF2-204ENST00000414978 NOL7Q9UMY1 257 aaKnown RBP2.94□□□□□ -1.94
MCF2-204ENST00000414978 LAMB2P55268 1798 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 A0A1W2PP64 1363 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 RAB3GAP2Q9H2M9 1393 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 TTC21BQ7Z4L5 1316 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 SYNGAP1Q96PV0 1343 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 ACKR2O00590 384 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 PIP5K1BO14986 540 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 HTRA2O43464 458 aaPredicted RBP2.94□□□□□ -1.94
MCF2-204ENST00000414978 TIAF1O95411 115 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 MLYCDO95822 493 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 MYL4P12829 197 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 PEPDP12955 493 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 XPAP23025 273 aaPredicted RBP2.94□□□□□ -1.94
MCF2-204ENST00000414978 HOXD12P35452 270 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 KCNJ5P48544 419 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 SEC24CP53992 1094 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 PER3P56645 1201 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 PHC1P78364 1004 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 ICA1Q05084 483 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 MGAT5Q09328 741 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 BICRALQ6AI39 1079 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 JMJD6Q6NYC1 403 aaPredicted RBP2.94□□□□□ -1.94
MCF2-204ENST00000414978 SHQ1Q6PI26 577 aaKnown RBP2.94□□□□□ -1.94
MCF2-204ENST00000414978 ZC3HAV1Q7Z2W4 902 aaKnown RBP2.94□□□□□ -1.94
MCF2-204ENST00000414978 ZNF655Q8N720 491 aaPredicted RBP2.94□□□□□ -1.94
MCF2-204ENST00000414978 SPATA5Q8NB90 893 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 NAXEQ8NCW5 288 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 TSPEARQ8WU66 669 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 GAB3Q8WWW8 586 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 ZNF566Q969W8 418 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 RGMAQ96B86 450 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 CDK5RAP3Q96JB5 506 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 UBXN10Q96LJ8 280 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 FBXL18Q96ME1 805 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 AKTIPQ9H8T0 292 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 SENP2Q9HC62 589 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 OBP2BQ9NPH6 170 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 PCDHB1Q9Y5F3 818 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 MAGED1Q9Y5V3 778 aaPredicted RBP2.94□□□□□ -1.94
MCF2-204ENST00000414978 TONSLQ96HA7 1378 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 COL2A1P02458 1487 aaPredicted RBP2.94□□□□□ -1.94
MCF2-204ENST00000414978 CLSPNQ9HAW4 1339 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 LGALS16A8MUM7 142 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 GOLIM4O00461 696 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 AKR1B10O60218 316 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 LMNAP02545 664 aaKnown RBP2.94□□□□□ -1.94
MCF2-204ENST00000414978 DPEP1P16444 411 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 STAT5AP42229 794 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 AFMP43652 599 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 GLRBP48167 497 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 HK2P52789 917 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 SLC16A1P53985 500 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 SUMO3P55854 103 aaPredicted RBP2.94□□□□□ -1.94
MCF2-204ENST00000414978 FAM193AP78312 1265 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 CREMQ03060 361 aa2.94□□□□□ -1.94
MCF2-204ENST00000414978 EXOSC9Q06265 439 aaKnown RBP2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms