RNA–Protein interactions for RNA: ENST00000409604.1

SNX13-202, Transcript of sorting nexin 13, humanhuman

TSL 1 (best) BASIC

Gene SNX13, Length 4,146 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-202ENST00000409604 LDLRAD1Q5T700 205 aa12.12□□□□□ -0.47
SNX13-202ENST00000409604 B4GALNT4Q76KP1 1039 aa12.12□□□□□ -0.47
SNX13-202ENST00000409604 PDCD6IPQ8WUM4 868 aaKnown RBP12.12□□□□□ -0.47
SNX13-202ENST00000409604 CYFIP2Q96F07 1278 aa12.12□□□□□ -0.47
SNX13-202ENST00000409604 NT5C1AQ9BXI3 368 aa12.12□□□□□ -0.47
SNX13-202ENST00000409604 NIF3L1Q9GZT8 377 aa12.12□□□□□ -0.47
SNX13-202ENST00000409604 VPS37BQ9H9H4 285 aa12.12□□□□□ -0.47
SNX13-202ENST00000409604 C17orf75Q9HAS0 396 aa12.12□□□□□ -0.47
SNX13-202ENST00000409604 MTRF1LQ9UGC7 380 aaKnown RBP12.12□□□□□ -0.47
SNX13-202ENST00000409604 A0A0U1RQJ8 604 aa12.12□□□□□ -0.47
SNX13-202ENST00000409604 ACRP10323 421 aa12.12□□□□□ -0.47
SNX13-202ENST00000409604 C10orf76Q5T2E6 689 aa12.12□□□□□ -0.47
SNX13-202ENST00000409604 ZNF507Q8TCN5 953 aa12.12□□□□□ -0.47
SNX13-202ENST00000409604 ATRIPQ8WXE1 791 aa12.12□□□□□ -0.47
SNX13-202ENST00000409604 IQCDQ96DY2 449 aa12.12□□□□□ -0.47
SNX13-202ENST00000409604 DDX47Q9H0S4 455 aaKnown RBP12.12□□□□□ -0.47
SNX13-202ENST00000409604 LAMB4A4D0S4 1761 aa12.12□□□□□ -0.47
SNX13-202ENST00000409604 NRCAMQ92823 1304 aa12.12□□□□□ -0.47
SNX13-202ENST00000409604 PASKQ96RG2 1323 aa12.12□□□□□ -0.47
SNX13-202ENST00000409604 NKRFO15226 690 aaKnown RBP eCLIP12.12□□□□□ -0.47
SNX13-202ENST00000409604 ATP1A1P05023 1023 aaKnown RBP12.12□□□□□ -0.47
SNX13-202ENST00000409604 PDGFRAP16234 1089 aa12.12□□□□□ -0.47
SNX13-202ENST00000409604 SDC4P31431 198 aa12.12□□□□□ -0.47
SNX13-202ENST00000409604 SH3D19Q5HYK7 790 aa12.12□□□□□ -0.47
SNX13-202ENST00000409604 PARD3BQ8TEW8 1205 aa12.12□□□□□ -0.47
SNX13-202ENST00000409604 NAP1L3Q99457 506 aaPredicted RBP12.12□□□□□ -0.47
SNX13-202ENST00000409604 COL22A1Q8NFW1 1626 aaPredicted RBP12.11□□□□□ -0.47
SNX13-202ENST00000409604 SEC31AO94979 1220 aaKnown RBP12.11□□□□□ -0.47
SNX13-202ENST00000409604 KRT3P12035 628 aa12.11□□□□□ -0.47
SNX13-202ENST00000409604 TAF6P49848 677 aa12.11□□□□□ -0.47
SNX13-202ENST00000409604 CCZ1BP86790 482 aa12.11□□□□□ -0.47
SNX13-202ENST00000409604 CCZ1P86791 482 aaPredicted RBP12.11□□□□□ -0.47
SNX13-202ENST00000409604 BTG3Q14201 252 aaPredicted RBP12.11□□□□□ -0.47
SNX13-202ENST00000409604 DCAF6Q58WW2 860 aa12.11□□□□□ -0.47
SNX13-202ENST00000409604 TRIM59Q8IWR1 403 aa12.11□□□□□ -0.47
SNX13-202ENST00000409604 C1orf54Q8WWF1 131 aa12.11□□□□□ -0.47
SNX13-202ENST00000409604 C18orf8Q96DM3 657 aa12.11□□□□□ -0.47
SNX13-202ENST00000409604 LACRTQ9GZZ8 138 aa12.11□□□□□ -0.47
SNX13-202ENST00000409604 EPB41L5Q9HCM4 733 aa12.11□□□□□ -0.47
SNX13-202ENST00000409604 CISHQ9NSE2 258 aa12.11□□□□□ -0.47
SNX13-202ENST00000409604 SLC16A3O15427 465 aaKnown RBP12.11□□□□□ -0.47
SNX13-202ENST00000409604 TGFB1I1O43294 461 aa12.11□□□□□ -0.47
SNX13-202ENST00000409604 GAS8O95995 478 aa12.11□□□□□ -0.47
SNX13-202ENST00000409604 BFSP2Q13515 415 aa12.11□□□□□ -0.47
SNX13-202ENST00000409604 C1orf228Q6PIY5 440 aa12.11□□□□□ -0.47
SNX13-202ENST00000409604 PPP1R14CQ8TAE6 165 aa12.11□□□□□ -0.47
SNX13-202ENST00000409604 ADAM32Q8TC27 787 aa12.11□□□□□ -0.47
SNX13-202ENST00000409604 C18orf25Q96B23 403 aaPredicted RBP12.11□□□□□ -0.47
SNX13-202ENST00000409604 ZBED3Q96IU2 234 aaPredicted RBP12.11□□□□□ -0.47
SNX13-202ENST00000409604 CDT1Q9H211 546 aa12.11□□□□□ -0.47
SNX13-202ENST00000409604 XPNPEP1Q9NQW7 623 aa12.11□□□□□ -0.47
SNX13-202ENST00000409604 A0A1W2PQC6 194 aa12.11□□□□□ -0.47
SNX13-202ENST00000409604 LRRIQ3A6PVS8 624 aaPredicted RBP12.11□□□□□ -0.47
SNX13-202ENST00000409604 TCP1P17987 556 aaKnown RBP12.11□□□□□ -0.47
SNX13-202ENST00000409604 CUL2Q13617 745 aa12.11□□□□□ -0.47
SNX13-202ENST00000409604 GOLGA7BQ2TAP0 167 aa12.11□□□□□ -0.47
SNX13-202ENST00000409604 TAF2Q6P1X5 1199 aa12.11□□□□□ -0.47
SNX13-202ENST00000409604 SAMD3Q8N6K7 520 aa12.11□□□□□ -0.47
SNX13-202ENST00000409604 HELQQ8TDG4 1101 aa12.11□□□□□ -0.47
SNX13-202ENST00000409604 THAP2Q9H0W7 228 aa12.11□□□□□ -0.47
SNX13-202ENST00000409604 MAFO75444 373 aaPredicted RBP12.1□□□□□ -0.47
SNX13-202ENST00000409604 ZRANB2O95218 330 aaKnown RBP eCLIP12.1□□□□□ -0.47
SNX13-202ENST00000409604 ARL4AP40617 200 aa12.1□□□□□ -0.47
SNX13-202ENST00000409604 FAM171A1Q5VUB5 890 aa12.1□□□□□ -0.47
SNX13-202ENST00000409604 SLC27A1Q6PCB7 646 aa12.1□□□□□ -0.47
SNX13-202ENST00000409604 DARS2Q6PI48 645 aaKnown RBP12.1□□□□□ -0.47
SNX13-202ENST00000409604 SLC35G2Q8TBE7 412 aa12.1□□□□□ -0.47
SNX13-202ENST00000409604 GPR152Q8TDT2 470 aa12.1□□□□□ -0.47
SNX13-202ENST00000409604 LRRC15Q8TF66 581 aa12.1□□□□□ -0.47
SNX13-202ENST00000409604 SEPT8Q92599 483 aa12.1□□□□□ -0.47
SNX13-202ENST00000409604 PDLIM2Q96JY6 352 aa12.1□□□□□ -0.47
SNX13-202ENST00000409604 CDC23Q9UJX2 597 aa12.1□□□□□ -0.47
SNX13-202ENST00000409604 TJP1Q07157 1748 aa12.1□□□□□ -0.47
SNX13-202ENST00000409604 ASTN1O14525 1302 aa12.1□□□□□ -0.47
SNX13-202ENST00000409604 SNAI1O95863 264 aaPredicted RBP12.1□□□□□ -0.47
SNX13-202ENST00000409604 SPATA31D3P0C874 917 aa12.1□□□□□ -0.47
SNX13-202ENST00000409604 LBX1P52954 281 aa12.1□□□□□ -0.47
SNX13-202ENST00000409604 SDHAF4Q5VUM1 108 aa12.1□□□□□ -0.47
SNX13-202ENST00000409604 SPATA31D4Q6ZUB0 917 aa12.1□□□□□ -0.47
SNX13-202ENST00000409604 NSMCE1Q8WV22 266 aa12.1□□□□□ -0.47
SNX13-202ENST00000409604 TNIP3Q96KP6 325 aa12.1□□□□□ -0.47
SNX13-202ENST00000409604 OSGEPQ9NPF4 335 aa12.1□□□□□ -0.47
SNX13-202ENST00000409604 NAGPAQ9UK23 515 aa12.1□□□□□ -0.47
SNX13-202ENST00000409604 GTF3C4Q9UKN8 822 aa12.1□□□□□ -0.47
SNX13-202ENST00000409604 UBQLN1Q9UMX0 589 aaKnown RBP12.1□□□□□ -0.47
SNX13-202ENST00000409604 RGS20O76081 388 aa12.1□□□□□ -0.47
SNX13-202ENST00000409604 MCM3P25205 808 aa12.1□□□□□ -0.47
SNX13-202ENST00000409604 CDKAL1Q5VV42 579 aa12.1□□□□□ -0.47
SNX13-202ENST00000409604 BTBD8Q5XKL5 378 aa12.1□□□□□ -0.47
SNX13-202ENST00000409604 RBM43Q6ZSC3 357 aaKnown RBP12.1□□□□□ -0.47
SNX13-202ENST00000409604 PALB2Q86YC2 1186 aa12.1□□□□□ -0.47
SNX13-202ENST00000409604 PPTC7Q8NI37 304 aa12.1□□□□□ -0.47
SNX13-202ENST00000409604 CELF4Q9BZC1 486 aaKnown RBP12.1□□□□□ -0.47
SNX13-202ENST00000409604 MYH3P11055 1940 aa12.1□□□□□ -0.47
SNX13-202ENST00000409604 GOLGA6CA6NDK9 693 aa12.09□□□□□ -0.47
SNX13-202ENST00000409604 GOLGA6BA6NDN3 693 aa12.09□□□□□ -0.47
SNX13-202ENST00000409604 EFCAB8A8MWE9 144 aa12.09□□□□□ -0.47
SNX13-202ENST00000409604 TRAPPC3O43617 180 aa12.09□□□□□ -0.47
SNX13-202ENST00000409604 GOLGA6DP0CG33 693 aa12.09□□□□□ -0.47
SNX13-202ENST00000409604 CYP2C18P33260 490 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms