RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 DDX27Q96GQ7 796 aaKnown RBP19.44■□□□□ 0.7
SDC1-203ENST00000403076 HPDLQ96IR7 371 aa19.44■□□□□ 0.7
SDC1-203ENST00000403076 ZNF560Q96MR9 790 aa19.44■□□□□ 0.7
SDC1-203ENST00000403076 UROC1Q96N76 676 aa19.44■□□□□ 0.7
SDC1-203ENST00000403076 YME1L1Q96TA2 773 aa19.44■□□□□ 0.7
SDC1-203ENST00000403076 NUP58Q9BVL2 599 aa19.44■□□□□ 0.7
SDC1-203ENST00000403076 PLCB1Q9NQ66 1216 aa19.44■□□□□ 0.7
SDC1-203ENST00000403076 ITIH6Q6UXX5 1313 aa19.44■□□□□ 0.7
SDC1-203ENST00000403076 MKI67P46013 3256 aaKnown RBP19.43■□□□□ 0.7
SDC1-203ENST00000403076 ANO9A1A5B4 782 aa19.43■□□□□ 0.7
SDC1-203ENST00000403076 GOLGA6L6A8MZA4 724 aa19.43■□□□□ 0.7
SDC1-203ENST00000403076 PODXLO00592 558 aa19.43■□□□□ 0.7
SDC1-203ENST00000403076 PPEF2O14830 753 aa19.43■□□□□ 0.7
SDC1-203ENST00000403076 ZC3H11AO75152 810 aaKnown RBP eCLIP19.43■□□□□ 0.7
SDC1-203ENST00000403076 TPM1P09493 284 aa19.43■□□□□ 0.7
SDC1-203ENST00000403076 NOP14P78316 857 aaKnown RBP19.43■□□□□ 0.7
SDC1-203ENST00000403076 ZNF667Q5HYK9 610 aa19.43■□□□□ 0.7
SDC1-203ENST00000403076 KLHDC7AQ5VTJ3 777 aa19.43■□□□□ 0.7
SDC1-203ENST00000403076 SPOPLQ6IQ16 392 aa19.43■□□□□ 0.7
SDC1-203ENST00000403076 LRRC43Q8N309 656 aa19.43■□□□□ 0.7
SDC1-203ENST00000403076 PPM1KQ8N3J5 372 aa19.43■□□□□ 0.7
SDC1-203ENST00000403076 CPLX3Q8WVH0 158 aa19.43■□□□□ 0.7
SDC1-203ENST00000403076 RABGGTAQ92696 567 aa19.43■□□□□ 0.7
SDC1-203ENST00000403076 TATDN2Q93075 761 aa19.43■□□□□ 0.7
SDC1-203ENST00000403076 SLC9A7Q96T83 725 aa19.43■□□□□ 0.7
SDC1-203ENST00000403076 CACNG4Q9UBN1 327 aa19.43■□□□□ 0.7
SDC1-203ENST00000403076 PDCD11Q14690 1871 aaKnown RBP19.43■□□□□ 0.7
SDC1-203ENST00000403076 PIRO00625 290 aa19.42■□□□□ 0.7
SDC1-203ENST00000403076 DDHD2O94830 711 aa19.42■□□□□ 0.7
SDC1-203ENST00000403076 ASS1P00966 412 aaKnown RBP19.42■□□□□ 0.7
SDC1-203ENST00000403076 ATP2A2P16615 1042 aaKnown RBP19.42■□□□□ 0.7
SDC1-203ENST00000403076 PNPLA4P41247 253 aa19.42■□□□□ 0.7
SDC1-203ENST00000403076 OR1G1P47890 313 aa19.42■□□□□ 0.7
SDC1-203ENST00000403076 CLCNKBP51801 687 aa19.42■□□□□ 0.7
SDC1-203ENST00000403076 BTG3Q14201 252 aaPredicted RBP19.42■□□□□ 0.7
SDC1-203ENST00000403076 WDR72Q3MJ13 1102 aa19.42■□□□□ 0.7
SDC1-203ENST00000403076 SPOUT1Q5T280 376 aaKnown RBP19.42■□□□□ 0.7
SDC1-203ENST00000403076 CACNA2D4Q7Z3S7 1137 aa19.42■□□□□ 0.7
SDC1-203ENST00000403076 LRRC52Q8N7C0 313 aa19.42■□□□□ 0.7
SDC1-203ENST00000403076 CXorf38Q8TB03 319 aa19.42■□□□□ 0.7
SDC1-203ENST00000403076 SIX2Q9NPC8 291 aa19.42■□□□□ 0.7
SDC1-203ENST00000403076 UBE2TQ9NPD8 197 aaPredicted RBP19.42■□□□□ 0.7
SDC1-203ENST00000403076 NXF1Q9UBU9 619 aaKnown RBP19.42■□□□□ 0.7
SDC1-203ENST00000403076 APEX2Q9UBZ4 518 aa19.42■□□□□ 0.7
SDC1-203ENST00000403076 TDRD15B5MCY1 1934 aaKnown RBP19.42■□□□□ 0.7
SDC1-203ENST00000403076 H0YGN5 161 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 TAF6P49848 677 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 POLR2FP61218 127 aaKnown RBP19.41■□□□□ 0.7
SDC1-203ENST00000403076 DSC1Q08554 894 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 TRIM14Q14142 442 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 PHLDB3Q6NSJ2 640 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 GJB7Q6PEY0 223 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 RRAGAQ7L523 313 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 COLGALT2Q8IYK4 626 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 PHOSPHO2Q8TCD6 241 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 IQCDQ96DY2 449 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 RNPC3Q96LT9 517 aaKnown RBP19.41■□□□□ 0.7
SDC1-203ENST00000403076 UBE2OQ9C0C9 1292 aaKnown RBP19.41■□□□□ 0.7
SDC1-203ENST00000403076 XYLT2Q9H1B5 865 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 NRDE2Q9H7Z3 1164 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 NLRC4Q9NPP4 1024 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 DNAJC12Q9UKB3 198 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 NUB1Q9Y5A7 615 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 NOL4O94818 638 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 GJB5O95377 273 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 ALDH2P05091 517 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 P4HA1P13674 534 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 UCHL3P15374 230 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 RAPGEF1Q13905 1077 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 UPP1Q16831 310 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 SV2CQ496J9 727 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 C9orf50Q5SZB4 431 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 DCLRE1AQ6PJP8 1040 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 HERC6Q8IVU3 1022 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 ARHGEF19Q8IW93 802 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 CMTR2Q8IYT2 770 aaKnown RBP19.41■□□□□ 0.7
SDC1-203ENST00000403076 ZNF689Q96CS4 500 aaPredicted RBP19.41■□□□□ 0.7
SDC1-203ENST00000403076 PAAF1Q9BRP4 392 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 GANQ9H2C0 597 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 APOBEC3GQ9HC16 384 aaKnown RBP19.41■□□□□ 0.7
SDC1-203ENST00000403076 CEP72Q9P209 647 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 DNAJB4Q9UDY4 337 aa19.41■□□□□ 0.7
SDC1-203ENST00000403076 PRG3Q9Y2Y8 225 aaPredicted RBP19.41■□□□□ 0.7
SDC1-203ENST00000403076 EPHB6O15197 1021 aa19.4■□□□□ 0.7
SDC1-203ENST00000403076 B4GALT3O60512 393 aa19.4■□□□□ 0.7
SDC1-203ENST00000403076 B3GAT3O94766 335 aa19.4■□□□□ 0.7
SDC1-203ENST00000403076 MFAP3P55082 362 aa19.4■□□□□ 0.7
SDC1-203ENST00000403076 TNNC1P63316 161 aa19.4■□□□□ 0.7
SDC1-203ENST00000403076 SHHQ15465 462 aa19.4■□□□□ 0.7
SDC1-203ENST00000403076 ARHGAP44Q17R89 818 aa19.4■□□□□ 0.7
SDC1-203ENST00000403076 FIGNQ5HY92 759 aa19.4■□□□□ 0.7
SDC1-203ENST00000403076 DPY19L2P1Q6NXN4 242 aa19.4■□□□□ 0.7
SDC1-203ENST00000403076 ZNF397Q8NF99 534 aaPredicted RBP19.4■□□□□ 0.7
SDC1-203ENST00000403076 FAM81BQ96LP2 452 aa19.4■□□□□ 0.7
SDC1-203ENST00000403076 SPAG5Q96R06 1193 aa19.4■□□□□ 0.7
SDC1-203ENST00000403076 MMS19Q96T76 1030 aa19.4■□□□□ 0.7
SDC1-203ENST00000403076 NIF3L1Q9GZT8 377 aa19.4■□□□□ 0.7
SDC1-203ENST00000403076 HCSTQ9UBK5 93 aa19.4■□□□□ 0.7
SDC1-203ENST00000403076 FAN1Q9Y2M0 1017 aa19.4■□□□□ 0.7
SDC1-203ENST00000403076 INSL6Q9Y581 213 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms