RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 CNTN3Q9P232 1028 aa31.13■■■□□ 2.57
HMGB1-205ENST00000399494 SYN3O14994 580 aa31.12■■■□□ 2.57
HMGB1-205ENST00000399494 LRG1P02750 347 aa31.12■■■□□ 2.57
HMGB1-205ENST00000399494 RPL9P32969 192 aaKnown RBP31.12■■■□□ 2.57
HMGB1-205ENST00000399494 ZNF528Q3MIS6 628 aa31.12■■■□□ 2.57
HMGB1-205ENST00000399494 TANGO2Q6ICL3 276 aa31.12■■■□□ 2.57
HMGB1-205ENST00000399494 KIAA2013Q8IYS2 634 aa31.12■■■□□ 2.57
HMGB1-205ENST00000399494 SUMF1Q8NBK3 374 aa31.12■■■□□ 2.57
HMGB1-205ENST00000399494 RASSF8Q8NHQ8 419 aa31.12■■■□□ 2.57
HMGB1-205ENST00000399494 C18orf25Q96B23 403 aaPredicted RBP31.12■■■□□ 2.57
HMGB1-205ENST00000399494 CALML4Q96GE6 196 aa31.12■■■□□ 2.57
HMGB1-205ENST00000399494 ZBTB45Q96K62 511 aaPredicted RBP31.12■■■□□ 2.57
HMGB1-205ENST00000399494 DRC1Q96MC2 740 aa31.12■■■□□ 2.57
HMGB1-205ENST00000399494 C17orf75Q9HAS0 396 aa31.12■■■□□ 2.57
HMGB1-205ENST00000399494 SPATA6Q9NWH7 488 aaPredicted RBP31.12■■■□□ 2.57
HMGB1-205ENST00000399494 FBXO4Q9UKT5 387 aa31.12■■■□□ 2.57
HMGB1-205ENST00000399494 SFI1A8K8P3 1242 aa31.11■■■□□ 2.57
HMGB1-205ENST00000399494 SEC24AO95486 1093 aa31.11■■■□□ 2.57
HMGB1-205ENST00000399494 CEBPBP17676 345 aa31.11■■■□□ 2.57
HMGB1-205ENST00000399494 MYH11P35749 1972 aa31.11■■■□□ 2.57
HMGB1-205ENST00000399494 ARPP19P56211 112 aa31.11■■■□□ 2.57
HMGB1-205ENST00000399494 PKP1Q13835 747 aa31.11■■■□□ 2.57
HMGB1-205ENST00000399494 MIA3Q5JRA6 1907 aa31.11■■■□□ 2.57
HMGB1-205ENST00000399494 PRSS36Q5K4E3 855 aa31.11■■■□□ 2.57
HMGB1-205ENST00000399494 MPZL3Q6UWV2 235 aa31.11■■■□□ 2.57
HMGB1-205ENST00000399494 KCNK18Q7Z418 384 aa31.11■■■□□ 2.57
HMGB1-205ENST00000399494 NELL2Q99435 816 aa31.11■■■□□ 2.57
HMGB1-205ENST00000399494 PLIN2Q99541 437 aa31.11■■■□□ 2.57
HMGB1-205ENST00000399494 H7C4K7 107 aa31.1■■■□□ 2.57
HMGB1-205ENST00000399494 PRRG1O14668 218 aa31.1■■■□□ 2.57
HMGB1-205ENST00000399494 SLC16A4O15374 487 aa31.1■■■□□ 2.57
HMGB1-205ENST00000399494 LAMTOR5O43504 91 aa31.1■■■□□ 2.57
HMGB1-205ENST00000399494 GRIN1Q05586 938 aa31.1■■■□□ 2.57
HMGB1-205ENST00000399494 STK38Q15208 465 aa31.1■■■□□ 2.57
HMGB1-205ENST00000399494 FOXD4L6Q3SYB3 417 aaPredicted RBP31.1■■■□□ 2.57
HMGB1-205ENST00000399494 ZBTB41Q5SVQ8 909 aa31.1■■■□□ 2.57
HMGB1-205ENST00000399494 FOXD4L3Q6VB84 417 aaPredicted RBP31.1■■■□□ 2.57
HMGB1-205ENST00000399494 RUBCNQ92622 972 aa31.1■■■□□ 2.57
HMGB1-205ENST00000399494 CLDN23Q96B33 292 aa31.1■■■□□ 2.57
HMGB1-205ENST00000399494 ELSPBP1Q96BH3 223 aa31.1■■■□□ 2.57
HMGB1-205ENST00000399494 RMDN1Q96DB5 314 aa31.1■■■□□ 2.57
HMGB1-205ENST00000399494 CORO1BQ9BR76 489 aa31.1■■■□□ 2.57
HMGB1-205ENST00000399494 CYP4F11Q9HBI6 524 aa31.1■■■□□ 2.57
HMGB1-205ENST00000399494 FBXL5Q9UKA1 691 aa31.1■■■□□ 2.57
HMGB1-205ENST00000399494 DMXL1Q9Y485 3027 aa31.1■■■□□ 2.57
HMGB1-205ENST00000399494 SLC26A4O43511 780 aa31.09■■■□□ 2.57
HMGB1-205ENST00000399494 MAGEA9P43362 315 aa31.09■■■□□ 2.57
HMGB1-205ENST00000399494 SLC39A14Q15043 492 aa31.09■■■□□ 2.57
HMGB1-205ENST00000399494 HYIQ5T013 277 aa31.09■■■□□ 2.57
HMGB1-205ENST00000399494 DCLK2Q8N568 766 aa31.09■■■□□ 2.57
HMGB1-205ENST00000399494 TCEAL4Q96EI5 215 aa31.09■■■□□ 2.57
HMGB1-205ENST00000399494 BORCS6Q96GS4 357 aa31.09■■■□□ 2.57
HMGB1-205ENST00000399494 SUSD3Q96L08 255 aa31.09■■■□□ 2.57
HMGB1-205ENST00000399494 FBXO2Q9UK22 296 aaPredicted RBP31.09■■■□□ 2.57
HMGB1-205ENST00000399494 NUB1Q9Y5A7 615 aa31.09■■■□□ 2.57
HMGB1-205ENST00000399494 SHISA7A6NL88 538 aa31.08■■■□□ 2.57
HMGB1-205ENST00000399494 MICAL2O94851 1124 aa31.08■■■□□ 2.57
HMGB1-205ENST00000399494 SLC10A6Q3KNW5 377 aa31.08■■■□□ 2.57
HMGB1-205ENST00000399494 TPGS2Q68CL5 300 aa31.08■■■□□ 2.57
HMGB1-205ENST00000399494 TPRG1Q6ZUI0 275 aa31.08■■■□□ 2.57
HMGB1-205ENST00000399494 KCTD17Q8N5Z5 321 aa31.08■■■□□ 2.57
HMGB1-205ENST00000399494 PNMA5Q96PV4 448 aa31.08■■■□□ 2.57
HMGB1-205ENST00000399494 HEBP1Q9NRV9 189 aa31.08■■■□□ 2.57
HMGB1-205ENST00000399494 TFIP11Q9UBB9 837 aaKnown RBP31.08■■■□□ 2.57
HMGB1-205ENST00000399494 SRPRBQ9Y5M8 271 aaKnown RBP31.08■■■□□ 2.57
HMGB1-205ENST00000399494 FCARP24071 287 aa31.07■■■□□ 2.56
HMGB1-205ENST00000399494 TARSP26639 723 aaKnown RBP31.07■■■□□ 2.56
HMGB1-205ENST00000399494 NASPP49321 788 aaPredicted RBP31.07■■■□□ 2.56
HMGB1-205ENST00000399494 CSTF1Q05048 431 aaKnown RBP31.07■■■□□ 2.56
HMGB1-205ENST00000399494 FZD5Q13467 585 aa31.07■■■□□ 2.56
HMGB1-205ENST00000399494 CTXN3Q4LDR2 81 aa31.07■■■□□ 2.56
HMGB1-205ENST00000399494 TIPINQ9BVW5 301 aa31.07■■■□□ 2.56
HMGB1-205ENST00000399494 INSL5Q9Y5Q6 135 aa31.07■■■□□ 2.56
HMGB1-205ENST00000399494 ZNF197O14709 1029 aa31.06■■■□□ 2.56
HMGB1-205ENST00000399494 KINO60870 393 aaKnown RBP31.06■■■□□ 2.56
HMGB1-205ENST00000399494 GUCY2CP25092 1073 aa31.06■■■□□ 2.56
HMGB1-205ENST00000399494 CCR2P41597 374 aa31.06■■■□□ 2.56
HMGB1-205ENST00000399494 SEZ6Q53EL9 994 aa31.06■■■□□ 2.56
HMGB1-205ENST00000399494 FAM78AQ5JUQ0 283 aa31.06■■■□□ 2.56
HMGB1-205ENST00000399494 KRI1Q8N9T8 703 aaKnown RBP31.06■■■□□ 2.56
HMGB1-205ENST00000399494 SPIRE2Q8WWL2 714 aa31.06■■■□□ 2.56
HMGB1-205ENST00000399494 HINFPQ9BQA5 517 aa31.06■■■□□ 2.56
HMGB1-205ENST00000399494 NRG2O14511 850 aaPredicted RBP31.05■■■□□ 2.56
HMGB1-205ENST00000399494 TOM1L1O75674 476 aa31.05■■■□□ 2.56
HMGB1-205ENST00000399494 HARSP12081 509 aaKnown RBP31.05■■■□□ 2.56
HMGB1-205ENST00000399494 TXLNAP40222 546 aa31.05■■■□□ 2.56
HMGB1-205ENST00000399494 RPS9P46781 194 aaKnown RBP31.05■■■□□ 2.56
HMGB1-205ENST00000399494 TMEM119Q4V9L6 283 aa31.05■■■□□ 2.56
HMGB1-205ENST00000399494 ZNF852Q6ZMS4 543 aa31.05■■■□□ 2.56
HMGB1-205ENST00000399494 TMEM161BQ8NDZ6 487 aa31.05■■■□□ 2.56
HMGB1-205ENST00000399494 MORC2Q9Y6X9 1032 aaPredicted RBP31.05■■■□□ 2.56
HMGB1-205ENST00000399494 OTOGLQ3ZCN5 2332 aa31.05■■■□□ 2.56
HMGB1-205ENST00000399494 PATJQ8NI35 1801 aa31.05■■■□□ 2.56
HMGB1-205ENST00000399494 NCAM2O15394 837 aa31.04■■■□□ 2.56
HMGB1-205ENST00000399494 RAD51AP2Q09MP3 1159 aa31.04■■■□□ 2.56
HMGB1-205ENST00000399494 STRN3Q13033 797 aa31.04■■■□□ 2.56
HMGB1-205ENST00000399494 KARSQ15046 597 aaKnown RBP31.04■■■□□ 2.56
HMGB1-205ENST00000399494 LINC00301Q8NCQ3 95 aa31.04■■■□□ 2.56
HMGB1-205ENST00000399494 DDX12PQ92771 950 aa31.04■■■□□ 2.56
HMGB1-205ENST00000399494 DNASE1L2Q92874 299 aa31.04■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms